Array 1 4342649-4341945 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACHIW010000001.1 Saccharopolyspora phatthalungensis strain DSM 45584 Ga0436922_01, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 4342648 37 100.0 37 ..................................... GTGGACGCGTCCACGGTGGTGTCCACCGGCCTGTCCA 4342574 37 100.0 37 ..................................... CTGTCGTCCAGGCAGGCCGTGGCCGATGAGATGGCTA 4342500 37 100.0 37 ..................................... CTCTCGTTGATGGCTGGTCATGTCGTTGATGGCTGGT 4342426 37 100.0 38 ..................................... GACGTTGCTCATGCCTGGGCCCCCATCTGGTCTCGGGG 4342351 37 100.0 37 ..................................... CTCTCGTTGATGGCTGGTCATGCCACGCCCGTGATCA C [4342344] 4342276 37 100.0 38 ..................................... TGGTCGGGGGCGGCGACACCGGGCATGCTCACCCTCGA 4342201 37 100.0 36 ..................................... TGCTCGGTCGATCACATCCCGTGGCGGCGCACCGAA 4342128 37 100.0 38 ..................................... AAGGCCAAGCTCCGCCAGCTCAACCCGCACCAGCAGTG 4342053 37 100.0 35 ..................................... CTCGCCAAGGTCGACGCCGACAAGATTGCGAAGCG 4341981 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ====================================== ================== 10 37 100.0 37 GTGGCATCGGCCCTACGGGGCCGATGAGGATCGCAAC # Left flank : CCTTCCCCGCGTCATGAAAGAGCCCGAGGGCATGTCCCAACTCACCCGCGCCAAACGCAGACGCGAACCGCTCCGCCAGCAAAGCGGTAGCACGAGCATGATCCGACAACGCATGCCACTGCCCGTTCATGTTGGCACTATGCGCCCACATCGGGTTCTCCCCAGAATCGTCGAAGGCGGTTCCCTACTGACGTTGACCGCACAAACAGCCATCGCCATGTGACCGGAAACGTCTTAGCACCGACCCCCGACAAAAGAAGAACCATCCCGCGATCCCCACACGAAAAGACGCACCGCCCGGACACACGATGAGCCCAGAGGCCACATCACCGGTCACCAGCGCCAGCCCCAACAAACCCCCTACGCTGCGGAACGCAACCCGCTCAGGATGACCAAGCGTCGTGCGACACGCCTACACTCACCGAAGTGATCGCGGGCGTGTCGGTCTCAGTGCGGTCACATGAAAGGTTCCGAGATACAGTTCTCCCTGTTCGCACAGG # Right flank : AGTCCGCATGCGACGACTGTGACCGTCACGCCGCTGGGTGTAGCGCACCGCCCGGTATTGCACTGCACGGTCGCTGTGGTGGACGAGCCCGGCCAGGTCGGCGCCGGTGGCCTGGCGGCGCCAGATCGCCATCCGCAGCGCGTCCAGCGCCAGCTCCGACCTGCCAGCCGACGATCAAGCGGGAGAAGACGTCGAGCACGAACGCCGCGTAAACCCAGCCGGCAGCGGTGCGCACGTAGGTGATGTCCGCCACCCACAACTCGTTCACACGCGGTGCTCAGCAGCGGCCCGCAGCACCTCCGTCAACTGCTTACGATCGGAGTCCAGCGCGCGCCCGACGAAGGTCGCCTCCGCGGCGCGATGCCTGGACCCGAGGTGGCGGTCACGCCGAGCGCCCCCTGAAGGAGGCGCCCAGTGCGGCACCGATCCCGGCGATCTCGTCCTCGGCCTGGAAGGTGGTGACGTCGAAGTTCTTGTGCTTGGCCAACTCATGCAGCACG # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGCATCGGCCCTACGGGGCCGATGAGGATCGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-14.70,-16.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [33.3-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,1.01 Confidence: MEDIUM] # Array family : NA // Array 2 4356217-4353300 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACHIW010000001.1 Saccharopolyspora phatthalungensis strain DSM 45584 Ga0436922_01, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================= ================== 4356216 37 100.0 36 ..................................... ATGGACCAGGCGGTTCAGATGGGCCTGACCCGTGAG 4356143 37 100.0 36 ..................................... CCCAGGGGCCGCGGGGCGAGCGCGGCGCTCCGCCGG 4356070 37 100.0 35 ..................................... GCTGTGTTAAGTGCGACTGGCGCGGCGTGCGGACC 4355998 37 100.0 36 ..................................... TGGATTGGGACGACCGACTCAAGGTCGCGACGGTGT 4355925 37 100.0 37 ..................................... CGGATCATGGGGATCTCCTCGGTGTTCGTCCTGAGTG 4355851 37 100.0 35 ..................................... CTGATCGAGAAGTCCACGGGGACCGGCCCCCGTGA 4355779 37 100.0 37 ..................................... TGGCACGCCGCCCACCGCCGTGGTGTCGACATCAGTG 4355705 37 100.0 37 ..................................... TCCAGCGCGACCGCCGCGTCCTCCGGGGATGTGTCGA 4355631 37 100.0 39 ..................................... CTCTCTTGATTGGCGGGTTGAGGTCAGCGGAATGGTTAG 4355555 37 100.0 38 ..................................... CGGGACGGGAAGCCGAGCGAAGTCCGACGCGCGCAGTT 4355480 37 100.0 36 ..................................... CCTCGTACTGGGAGACGCGGACCGAGGTGCCGCATG 4355407 37 100.0 35 ..................................... CTGATCGAGAAGTCCACGGGGACCGGCCCCCGTGA 4355335 37 100.0 37 ..................................... TGGCACGCCGCCCACCGCCGTGGTGTCGACATCAGTG 4355261 37 100.0 37 ..................................... TCCAGCGCGACCGCCGCGTCCTCCGGGGATGTGTCGA 4355187 37 100.0 39 ..................................... CTCTCTTGATTGGCGGGTTGAGGTCAGCGGAATGGTTAG 4355111 37 100.0 38 ..................................... CGGGACGGGAAGCCGAGCGAAGTCCGACGCGCGCAGTT 4355036 37 100.0 36 ..................................... CCTCGTACTGGGAGACGCGGACCGAGGTGCCGCATG 4354963 37 100.0 34 ..................................... ACCTCAGGCGACGGGTGCTGTCGACGACCTGCTG 4354892 37 100.0 37 ..................................... CACAAGAAGGGCCGCAGCTACGACCTGTACGCGCCTG 4354818 37 100.0 36 ..................................... TGCACTGGACGCGGAAGGAATGCTGGCCGCACTGGG 4354745 37 100.0 35 ..................................... AAGCTGGGGGACTCCGCCACAGCACTGGACGCGGC 4354673 37 100.0 37 ..................................... CAGGTCGTAGAGTGCCGCGGTGAGGGTTCGGTCGGAG 4354599 37 100.0 37 ..................................... CACTCCCCGGCCTTGTACGGTCCGCTGGCGAACCAAT 4354525 37 100.0 34 ..................................... TCCTGGCTACCTGGTCAGGCGCACCAGCGCGGGA C [4354505] 4354453 37 100.0 38 ..................................... GGACACAAAGGGGAAGGGCACCCGCGGTATGCGGAGTG 4354378 37 100.0 41 ..................................... CGGATGATGCTGACCGAGGACGCCCAGTGGATCGACTGGAA 4354300 37 100.0 35 ..................................... ACGCTGTTGAACGAAACCCACCACTGGATCACCAG 4354228 37 100.0 39 ..................................... AGCTGCCACGAGACGTACACCCACTCCGGGTCATCTGGC 4354152 37 100.0 37 ..................................... GACATCAAGCGCTAGGTGCAGCTCGTCAATCTGTTTG 4354078 37 100.0 38 ..................................... CCAACCATCGTGACATCACCTCCCCTGTCTGCCTACTG 4354003 37 100.0 36 ..................................... AGCGCGGGCTATGTCGGCGTCAACCTGGACGTCGAT 4353930 37 100.0 38 ..................................... AACGTGCACCGCTTCTACAGCGTCCAGGACGCCGCAAA 4353855 37 97.3 37 ..............................G...... CTTGCCATCGCCGTCGTGATCGTCGTGCTGGCGATCT 4353781 37 97.3 36 ..............................G...... CACCCCGACGTCCCGGACGAGTACCTCGCCCGCGTT 4353708 37 100.0 38 ..................................... TGTTCCGACGGAGCCGGGTACGAGGGCAAGACCTGCAA 4353633 37 100.0 35 ..................................... CGAATTCCGACTACGGGACCAGTGTGTCCCGAGAG 4353561 37 100.0 38 ..................................... CGGGTAGAAGGCCATGTACATCGGATCGTTGAGCAGGC 4353486 37 97.3 38 .......................G............. CTGCCGGAATGCTTGCGCCTGAGCGTGTTCCTGCTCGC 4353411 37 97.3 38 .......................G............. CTGCCGGAATGCTTGCGCCTGAGCGTGTTCCTGCTCGC 4353336 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ========================================= ================== 40 37 99.7 37 GTGGCATCGGCCCTCCGGGGCCGATGAGGATCGCAAC # Left flank : TGGACGTTTCCGGACTGTGCCGTGCCTGAGTGTAGTTGATCGCGCTGAGCTGCAGCGACATCAGGCGCGGCATGTGGTCCATGGCGGTTCACAGTACCCCGCAACGGACCATAAAGCATGGATAAACGATGGTTGTGCCAGCCCGCGCTGGACTCCCCGACCCAAGTTAGACCCACCCGCCTCCCGTGCCGGCGCCTCAGTCGGTTCGCCCCCCAACAATGCCCCACGCGCCCAAAGGCAGCACGCGGATACAGCAGCATCCCCTAGCATTTACGGTTACGGTGCGCATCGAGCGAGCCGCAAGCTCACGGCTGAATACGACTAGATGGACCCGGGAGCTCGTGAGGCCGAACCAATCCCTGCGCCGGGGTACGCAGCCCGCTTAGGATGACCAAGCGTCGTGCGACACGCCTACACTCACCGAAGTGATCCCCGGGCGTGTCGGTCTCGGTACGGTCACATGATAAGTACCGAGATACAGTTCTCCCTGTTCGTGCAGG # Right flank : CGTAGCGCCGCCAGCAGCAGCGGCTGACTGCCCGATTGAAGCCCGGCTTCCCGTTTCTTGTCTTCGTGCCGGATGTGGTCCCAGCCGTCAATCATGGCGTTCCTCGCCGCTGTCGTCGGTTGATGTTCACGTGTGGTGCCGTGGTCGGCTACGCCGGACCTCGCCGTTTCTGTGCCTGACGCGCTCGGGGATCGCGGTTCGGTAGGACGTTTCGATTTTCCGAAGCGACCCGGTGGCTAGAAGACCAAGGGAGTGTGGTGTGGTGCTGGTGGGGAGTGGCCGAGATGCTCGGCTTTGGCGAGGGCGCCGTGGTGCAGTTTGTAGACGCGGATGCTGTCGTGCTCGGCGTCGATGACGTCGAGCAGGCGTTGCTGCATGAGTAGCCAGTCCACCTCGGTGCACACGACTTCGAAGACGGACTTTTGCACGCGCAGTCCGTATGCTTCGCAGACTTTGGCGACTCTGCGGAGTCTGCGTGCACCGGCTGGTGTGCTGGTGTC # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGCATCGGCCCTCCGGGGCCGATGAGGATCGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-14.70,-16.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [33.3-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.01 Confidence: HIGH] # Array family : NA // Array 3 5023147-5023331 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACHIW010000001.1 Saccharopolyspora phatthalungensis strain DSM 45584 Ga0436922_01, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================== ========================================== ================== 5023147 34 97.1 41 ...............................T.. GCGAATCATGCCAAGGCGGCCCCCAAACCATGCCAACACGG 5023222 34 100.0 42 .................................. CAATTCCCCCGAAAACGCGCCTCCCAACCATGCCAACACGAA 5023298 34 97.1 0 ..................T............... | ========== ====== ====== ====== ================================== ========================================== ================== 3 34 98.1 42 AACCTCCCACAGCCCCAACCCCCTCGAAAGGCGC # Left flank : CCGGGCGATGAGCTCGGCGTCCGAGCACGACACCACAGACGAGCGTGAAGAGGTCATCTCCACGTTCGCGTCCCGGGTGTCCGTCAACGGTGCCATGCCTCCATTCTCCCAGATTCGAACACCCATTCGCACGCTTTCCAGCATCGCTTGATCAGGTGAAAACCTCCACCAAAACCCCGAAAACCCCCACCCAGCAACAAAAACTCATCCACCACACGCCGAAGGCGCCCCCTCACCACGACCGATCAAAAATCCTTACGGAACAACCCCAAGCCGACCGGGCACCAGCCCCAGCCATGACCGAATCCGCCAACCCGGCAACGCAACCCGCCGGTTGCGCCAGCCCACTCCGGGGCCATCCCCGCGATACAAAGCCAAACCGGGGCTGTGGGCCGGATGTCAAGCCTGAAACCTCGAAGAGGCGGCCGCCAGGCCGGGCTTGACCTCCGGAACACAGCCCCCACACTCCACCGATCGCGGGGATGGCCCATCCAACACCG # Right flank : CTAGGACTGCCGCGATCGCCGGCCCAGCAACTCAAGCGCATCGGCCGCGGATGTGAGCGGGCTGCCTTCTGGGAGGTCTCGGTCGGCGTCGCCGCTTGCGAGCTCGGCCCGGCCCACGACGAACCAGAGCCCCTGCGCGATCGAGTCGGTGTGGTTCAGGTAGAGGTGCGGTCGCTGAGATTCGAAGCACAGCGAGTCGCCGGGCCGCAATACGTAGGTGTCGAAATCGAGCTTGAGCGTCAGCTCGCCCCGGATCAGATATCCATATTCGATACCCGAGTGGCGCATGAGCTTGCCGTTCGCGGAGCTGGATCCGCCTGGAGCGTAGGTGGTGAGCAGCGGATCGACGAAAGTGTATCCGGCGACCGCCAGTCGTTCCCAGGTGACACCGTTGGTCATCTCGATGCGGGGGCTGTCCTCGTGCCGCTGCACAGGTTGAGGCGAGCGCGTCGCTTCGACCGGGGCGCTCGACGGGTTCCGCAAGAGCCCGTCGAGCGAGA # Questionable array : NO Score: 2.57 # Score Detail : 1:0, 2:0, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AACCTCCCACAGCCCCAACCCCCTCGAAAGGCGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,2] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,-0.70] Score: 0/0.37 # Array degeneracy analysis prediction: NA [1-1] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [33.3-30.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0 Confidence: MEDIUM] # Array family : NA // Array 4 5272888-5272128 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACHIW010000001.1 Saccharopolyspora phatthalungensis strain DSM 45584 Ga0436922_01, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 5272887 29 96.6 32 ............................A GTGTGCTAGATTTAATTGACTAGCAGAATAGC 5272826 29 100.0 32 ............................. CATCGTGGGGCGTCCTCAAAGAGCTCGCGAAC 5272765 29 100.0 32 ............................. CTGTGGGACTCCAACGCCGCCAAGGGCATCCC 5272704 29 100.0 32 ............................. GTGTCCGACCCGAACTGCACCCGCGACGACTG 5272643 29 100.0 32 ............................. AGCCGAAGCCACTGGCGTGCCCGATCCGCCGA 5272582 29 96.6 32 ............................G GAGAAACGCATGACGAAGGATCTGGATACTGC 5272521 29 96.6 32 ............................G ACACCGGACACGGCCGTCGCGATCAAGACCGG 5272460 28 96.6 32 ......................-...... GCGTCAGGCCAGTCCGACAGGACCAGTTCGGC 5272400 29 93.1 32 .........C..................G ACGTAGGGGACGGCAACCCCGATGACCTCCGC 5272339 29 100.0 32 ............................. GACCTTGTTGAGGTCGCCCGCAGGCTCGTACT 5272278 29 96.6 32 .........................C... AGCGTGCAGCTCTCCGGACTGCTGGCATCGCT 5272217 29 93.1 32 ................T...........T GGGCACAGCAGCACGGCGACCCCGCTGCCGCC 5272156 29 93.1 0 .........................C..G | ========== ====== ====== ====== ============================= ================================ ================== 13 29 97.1 32 CGATTCCCCGCGCGAGCGGGGGTGGTCCC # Left flank : GCAACAGCTTCGCGGCATGGAAGGCGCCCAAGTCAAGGCGACCAACAAATACCTCGCCAAACAACACCGTGTCGGCCCGTTCAAACGCTCCTACGACCCGCACGACTTCGACGCCGGCGAACCGGTCAACAAAGCACTCACCGCAGGCAACGCCGCCCTCTACGGCATCACCACCGCCGTCCTGCTCAGCCTCGGTGCCTCGCCTGCCCTGGGACTCATCCACGAACACAACCAGCGTGCGTTCACCTACGACATCGCAGACCTCTACAAGACCCAGTACATCCTGCCGACCGCGTTCTCACTCGCCCGAAGCGACAACCCACACCGCGACATCCGCCGCCAACTGCGCGACGACCTTCGCCTCCTACGCCTCGTGCCCCGGATGATCCGCGACATCCACTACGTACTCGGCGACGACAGCACACCCGATCATGAACCCCGACCACACCACACCGGATCACAAAACAGCAACGCAATAGCATTTCACCAGGTCGCCAAGC # Right flank : TCGGTTGGGCCGAGCTCGCGTCAGCCACACCGGCAGTCACCACCTCGCGGCCATCCCCACCACCGCGCCACCGTGGTCCGCCCCCAGCCGAGAAGTCGCCCGACGGGCACTTGCCCGCACCCTGCCCGACACCGAACCGACCACGGCAGCCCAAGTCAGCAATGCAGCCCTCCACATCGCAGCAGAATGGGGCCGCTTCCTCCGACGCGACGACCTTCGCCAGGTCCTCGCGCACTGGCAACGCACAGCGTGGCTACGCACCAGCCCGCCAGCACCACGACGATGGGTCACCACCGAACTCGGTCACCGCACCTTCCGCGCCATCGCCCGCGCTACCGGAACGCGCCTACCCCGACGCCCCCGCATTCAAGACCACGACCACGACCGGCTGACCGCCCACCTCGTCGGACAACTCGCCGCGACCCACCCCACCGTCGTCGGCCCACTCCGCATCGCCCGCCGAACCAGCCTCGGAAAAGGCCAATCCTGGATCATCCCGG # Questionable array : NO Score: 5.73 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.62, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CGATTCCCCGCGCGAGCGGGGGTGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCTTCCCCGCGCGAGCGGGGGTGGTCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.20,-13.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [28.3-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //