Array 1 707-130 **** Predicted by CRISPRDetect 2.4 *** >NZ_LT700225.1 Actinomyces provencensis strain SN12, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 706 28 100.0 33 ............................ GGGTGACCTTAGTCGCACGGGGGCAGAGGTTCA 645 28 100.0 33 ............................ CTCAGGGGCGGGCACAACTCACTCGCGCACTCC 584 28 100.0 33 ............................ CTGTGAACACATACAGTTCTAACTAATCATTAG 523 28 100.0 33 ............................ CTTGACCGGTCGGCCGAATATGACCTAGGTTTG 462 28 100.0 33 ............................ CTATTGATTAGTTAGAACGTTAGAACGTTAGAA 401 28 100.0 33 ............................ CTGTACCGGGTAGAGCGGTATAGTTAGAAGTAA 340 28 100.0 33 ............................ TAGCCGAAACACCCCCGCTCGGGGGTGTCGTGC 279 28 100.0 33 ............................ TGGCCCTGACGGCCGAACAACCCAGGGAACCCT 218 28 100.0 33 ............................ CGTCGTGCAGCGACTGGCGTACATCACGCTCAC 157 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 10 28 100.0 33 GTGCTCCCCGCGAATGCGGGGATGATCC # Left flank : GTGCCTACCGCAACCCCGACCGGGCCGCCGGTCGAGACCAGCTGGCCCACCTCATTGATGCCATCAGCCGCGAAGTCCCCTCCGTCCTCGCGGAGATCACCACGCTGGGACGCACCCTCAAGCGGCGCGCCACAGACGTCCTGGCCTACTTCGAGCGCCCCCACACCTCCAACGGCCCGACAGAAGCCCTCAATGGTCGACTGGAACACCTGCGCGGCTCAGCCTTGGGATTCCGCAACCTCACAAACTACATCGCCCGCAGTCTGCTCGAGGCCGGAGGATTCAGACCCCAACTACACCCTCAATCGTGAAGAGCCACTAATCATTA # Right flank : CCAGTATAGCGGGAACAGAACGAGTTCTGATGGTTCAGAATTGCCTGTCGATATTTCGCGATCGTAATCCGGACACGCTTTGGTGATAACGCCAAAATGTGTGAGCGGGCCCGTAGAATTACGCTATGGG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGAATGCGGGGATGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCGAATGCGGGGATGATCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [53.3-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.87 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 3038733-3043886 **** Predicted by CRISPRDetect 2.4 *** >NZ_LT700212.1 Actinomyces provencensis strain SN12, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 3038733 28 100.0 33 ............................ CATGTTCCTCAACGCGCTCCGGATCGAGAGTGG 3038794 28 100.0 33 ............................ CTGATGAATAGTTATAACTAATGATTAGTTAGA 3038855 28 100.0 33 ............................ CCCGTGGCGGTGATAGTACTATTAGAGGTAAAG 3038916 28 100.0 33 ............................ CGAGGTCGGCCTAAATGCCGTCCTGTGCAAGTC 3038977 28 100.0 33 ............................ CCCTGGCGTGGCTGGGGCGATGAAGATAACGTG 3039038 28 100.0 33 ............................ CCGTGCGCCACTCCTCCAGAGCCGTCACCACTG 3039099 28 100.0 33 ............................ CCGCTGGGTGCGTCTCATCGTGACCGCAGAGCC 3039160 28 100.0 33 ............................ CTGTCAAGGATGGCACCGGCGCGTCGAGGTTGA 3039221 28 100.0 33 ............................ CGAGAAGGAATACGTGGAGCAGACGGGAGCCGC 3039282 28 100.0 33 ............................ CCAGTGTTCACGACACGCGAGGTCGCGGACATG 3039343 28 100.0 33 ............................ CACGTCCGCGTCGCCCGACTCGTAGATGAGCTG 3039404 28 100.0 34 ............................ CCTGCGATGCCATAGTCCCGTGAACTGGGCGCTG 3039466 28 100.0 33 ............................ GCCGGGCACCATCATCGGCTTGACCGTGTACGA 3039527 28 100.0 33 ............................ CAATAGCGTACCGGGTAGGGCGGTATAGTTACA 3039588 28 100.0 33 ............................ GGCAGGACATGCCGATGGTGTTGACCGTCAAGG 3039649 28 100.0 33 ............................ GCATAAGGGCTCCCTTCCTAACCAACAGGTTAG 3039710 28 100.0 33 ............................ CACGTCCGTGAACACCGGCGCTTCCTGCAAGTA 3039771 28 100.0 33 ............................ CTCGGCGCGGCTGTTCGTGTCGAAGTCCGACCA 3039832 28 100.0 33 ............................ CAGGAGGACGCTCACGTCGGTCTCCGGGTCGAT 3039893 28 100.0 33 ............................ CTCGGCTGCCTTCCCGAGGCCGTTGAAGGCGCC 3039954 28 100.0 33 ............................ CACTCGGCTCCCGGGCACGCTGACGCGGGCGAG 3040015 28 100.0 33 ............................ CCGCCGTCTCCCACCCGACCATCGGGCAGAACA 3040076 28 100.0 33 ............................ CTGGGACCGTGGGGAGGTCCGGATCACCTCAAC 3040137 28 100.0 33 ............................ TAAGCCGAAACACCTTGCCTAGGCAAGGTGTCG 3040198 28 100.0 33 ............................ GCGGAGGCCGTCGCCATCCCCACCCGGATCGAC 3040259 28 100.0 33 ............................ CCCCGCCGGGGGCGGCGGCACCCTCTCCTACGT 3040320 28 100.0 33 ............................ CGCCGAGGTGCAGAACGCCCTCGCCCAGGCCCT 3040381 28 100.0 33 ............................ CTAGGTCTTTAGTCCTTACTACGTCTGACGTAG 3040442 28 100.0 33 ............................ CTGAATAGCCGGGCGTGAGAGGTCCGGCCAGTC 3040503 28 100.0 33 ............................ TGGTTAGGGTATTGTTTACACGGGCAATAGGGG 3040564 28 100.0 33 ............................ CGCTTGCATGTCGCGGCGCCAGACATAGAGGCC 3040625 28 100.0 33 ............................ TACCGACCGTCTCGCCGTTCATCGCAGCGTGGG 3040686 28 100.0 33 ............................ CGGATGGGACGCTTACATTCCCTCCAAACTCGA 3040747 28 100.0 33 ............................ CGCGATCACCTACCCGGTGTTCGGTGCGCTGGA 3040808 28 100.0 33 ............................ TCGGGATCGTCCATGCGGTGTCCGAACAAGATC 3040869 28 100.0 33 ............................ CTGGGACAGGGAGGAAGTCCGGATCACTTCAAC 3040930 28 100.0 33 ............................ CGCGCGGCATGTCGGGTAGCCTACAGGTGGGAC 3040991 28 100.0 33 ............................ CAATAGCGTACCGGGTAGGCCGGTATAGTTAGA 3041052 28 100.0 33 ............................ CAGTTAGAACTATTGATTAGTTATAACTAATGA 3041113 28 100.0 33 ............................ CGCGACGGGAGAGCGTGAGGGTGGGGGCGTAGC 3041174 28 100.0 33 ............................ TAGTTAGAACTGATGAATAGTTATAACTAATGA 3041235 28 100.0 33 ............................ CTGAATAGCCGAGAGTGAGAGTCTCGGCCAGTC 3041296 28 100.0 33 ............................ CGCTTCAGGGGAGGCTCCTTTCTCAATGAATTT 3041357 28 100.0 33 ............................ CAGGTCGGGCAGCGTGCCCAGAACGTCTGTGAT 3041418 28 100.0 33 ............................ GTACTCAGCGGCCATCACCTACGTGCGTGTCCT 3041479 28 100.0 33 ............................ CTACTCGCGGGGGAGACCCGCCGGTCCGCCGAC 3041540 28 100.0 33 ............................ CTGCCAGGCTCAAGCTCTACCACCGCAGAGATC 3041601 28 100.0 33 ............................ CTGCGCATCCTGCAGTTCCTGCAGGGCGTCCAC 3041662 28 100.0 33 ............................ CTGCTTTCGCACGTCGCCATAGGTGTCGCTGAA 3041723 28 100.0 33 ............................ CACTCGCGGCGCGGGGCCAGCAGCGCCTCTCAC 3041784 28 100.0 33 ............................ GTTATGGAAGATATAGTTAGAACTATAGCTATA 3041845 28 100.0 33 ............................ GCCGGGCGCTGCTACTGGAGGTGCGATCACGGG 3041906 28 100.0 34 ............................ CTGATGAATAGTTATAACTAATGATTAGTTAGAA 3041968 28 100.0 33 ............................ CACATACCCACGAGGGTACCTGTGGATACTGTG 3042029 28 100.0 33 ............................ GCATAAGGGCTCCCCCACTTAGGCAAGCCTTAC 3042090 28 100.0 33 ............................ TCTGACTTAGGTTTAGGTCATCGGCAAGGAAGC 3042151 28 100.0 33 ............................ CTAATGATTAGTTAGAAGTTATGGAAGATATAG 3042212 28 100.0 33 ............................ TGATTAGTTGTAATGGGGAGGGGAATGTCTAAA 3042273 28 100.0 33 ............................ CAGCCATACAGGGATTCACTCACCCCCACGGCA 3042334 28 100.0 33 ............................ CACATGTTCGATGATGGACCATGCCGTGGGCAT 3042395 28 100.0 33 ............................ GCGCGAGCGCCTCGTCGTCGCCGACCTGCTCGG 3042456 28 100.0 33 ............................ GGCGGCCACCCACGAGTCCGCCGCGAACATGGA 3042517 28 100.0 33 ............................ CGAAGTCCTCTTCCTTGAGCCCCGTACCCCAGC 3042578 28 100.0 33 ............................ CAGGACGACGGCGTGCGAGTGACTGCCGTGGAC 3042639 28 100.0 33 ............................ ACGGACGGTTCCATTGAGCCCTTTTGCTGAGAT 3042700 28 100.0 33 ............................ TGAGGAGTCCCTGCGGGTGTGGGCAGGCGACGT 3042761 28 100.0 33 ............................ CTGGGTCGGTGGCATCCCGGGACGCATCCTGGG 3042822 28 100.0 33 ............................ GGCCCTGGGGAAGGTGCAGACCGCGACCGGCTT 3042883 28 100.0 33 ............................ CTGGACGGCCTTCACAGCCGTCATCCGCTCCAC 3042944 28 100.0 33 ............................ TCACCAGGTCGCCGGACAGCCCTCGGCCACCAC 3043005 28 100.0 33 ............................ CATGCTCCGCAGGGAGTCAATCAAAGACATGAG 3043066 28 100.0 33 ............................ CGGCCGAGCCGAGAGGTTCGAGGGCAAGTTGAG 3043127 28 100.0 33 ............................ CGGCGCCGGCGCACCCTCCACTAGTGGGGCTGA 3043188 28 100.0 33 ............................ GCTCAGCGTGGAGGCTGACGGGCTGATCGGGCC 3043249 28 100.0 33 ............................ GTTCCTACTGTCCATTAGTTCCTACTGTCCGTG 3043310 28 100.0 33 ............................ CTGACCAGGAGGTAGCACGACATGAGCAACTTG 3043371 28 100.0 33 ............................ GCATGTGCTGACGTTCCCCACCTGGTTCACGGC 3043432 28 100.0 33 ............................ TACTAGGTCCATAGTCGTGTGCTGACAAGCGGA 3043493 28 100.0 33 ............................ CGAGCCCACGGACTTGGGGCCGCCCATGATGGA 3043554 28 100.0 33 ............................ CGAGATGCGCGAGAGCTTCGAGGCGTCTGGGAA 3043615 28 100.0 33 ............................ GAAGCGGAAGCCCTTGCCGACTCCTACGGACTG 3043676 28 100.0 33 ............................ CGACGCTGACCTCGACAGCCTGTTCAAGTTTGA 3043737 28 100.0 33 ............................ CGAGGACGTCGGTGAGGTCCGCGCGCCCCTGGA 3043798 28 100.0 33 ............................ CTTGCAGATGTCCTCGGGGTCGGGCCGGGGGAA 3043859 28 96.4 0 ...........................G | ========== ====== ====== ====== ============================ ================================== ================== 85 28 100.0 33 GTGCTCCCCGCGAATGCGGGGATGATCC # Left flank : CCTGGTCCTGAACTCCTGTCCGGCAGGGTTGAGGGGAGACGTGTCGCGCTGGTTCATGGAACTCGCGCCGGGTGTCTACGTGGGTCGGGTGTCGGCGCGGGTTCGCGACCAGCTGTGGGATCGCATCGTCGAAGCGGCCGGTCAGGGACGGGCTCTGCTGATCTATCCGGCCAGGAATGAGCAGGGTTACGTCGTCCGCGAGCACCAGTACGGGTGGGGGATGGAGGACTTCGACGGCATCGTGCTCATGCGTCGGCCGCCAGAAGGACGCGATCCGGTGGACGGAGTGCCGTCGGACAAGCCTCCGAGAGGATGGTCGACCGCGGCCCGGAGGCGCAGGTTCGGGAGGAAGTGACCAAGTTCGTGGGGGGCGTCTGTCCCGTGCGTGCGTAGCAGATACGGGTCGCGGACGCCCTCCCGTGAACCTGAGCGCAGAAGGCGCAAGGCTGCAATCCATGTAAATTGACCGGTGCCGTATCGGTTGGCGCAGGTCAGCCACT # Right flank : GGCTCTTCACGATTGAGGGTGTTGTTGGGGTCTGAATCCTCCGGCCTCGAGCAGACTGCGGGCGATGTAGTTTGTGAGGTTGCGGAATCCCAAGGCTGAGCCGCGCAGGTGTTCCAGTCGGCCATTGAGGGCCTCGGTCGGACCATTGGAGGTGTGGGGGCGCTCGAAGTAAGCCAGGACGTCTGCGGCACGCCGCTTGAGGGTGCGTCCCAGCGTGGTGATCTCCGCGAGGACGGAGGGGACTTCGCGGCTGATGGCATCAATGAGGTGGGCCAGCTGGTCTCGACCGGCGGCCCGGTCGGGGTTGCGGTAGGCACCCACGATCTTCTGGTACACGCTCCAACTGGCTTCCACCTGGGCGTGTCGGTCCTGGGCGAAGACGGCCTCCAGGCGGGTGCGCTGCTTGTCTGTGAGGAGATCCATCCCGGTGTGCAGCGTCCGACGCACCCCGTACAGAGGGTCCCCGGACCTGCCACGATGCCCGGTGGTCTCCTGCTGGA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGAATGCGGGGATGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCGAATGCGGGGATGATCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [43.3-40.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 3044901-3047553 **** Predicted by CRISPRDetect 2.4 *** >NZ_LT700212.1 Actinomyces provencensis strain SN12, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 3044901 28 100.0 33 ............................ GCAGGACCGAGGCGCGGGCACGGCATTCGACGT 3044962 28 100.0 33 ............................ CATCAAGCGGTCCACAGACAGGATGCAGGAGAC 3045023 28 100.0 33 ............................ CGCGAACTGGTACTTCGGGTCTCGCCTCTCTGC 3045084 28 100.0 33 ............................ CGCGCTCCAGTTGATGCGCATGGCGTTGCTGGG 3045145 28 100.0 33 ............................ CTGTGGCCGCCTCATGGCTGAGAGGCTACGCAG 3045206 28 100.0 33 ............................ GCCGGTGAGGGCGGCGAGGACCTGCAGGCTCGT 3045267 28 100.0 33 ............................ GAAGGGACCGCGGAGGGCGTAGTTGTCGATGGC 3045328 28 100.0 33 ............................ GTCGCCGGGGCTCATCTCGGGGCGGCACTCGAT 3045389 28 100.0 33 ............................ CATCACCCAGTGGATCGGACAGCGCCGCCGGGA 3045450 28 96.4 33 ..A......................... CCCCTCGGCCTGTCGCGAGTCCACACTGGCGAG 3045511 28 100.0 33 ............................ CTACCTGATCCGTGGAAATGGTCCGCTCAAAGG 3045572 28 100.0 33 ............................ CGTCAGCCACAACAGCCTGATCACGCAGTGCAA 3045633 28 100.0 33 ............................ CATCACCCGGTCCACAGTCGCAGCGGCCTTGAT 3045694 28 100.0 33 ............................ CGGGTCATGATCGAGCCATCGTCGGGCGGGAAG 3045755 28 100.0 33 ............................ GCGGCGAGCTCCACCCCCAGACGCTGCCCATCC 3045816 28 100.0 33 ............................ GCTGGCCGTCCTCACTGCCGACGCCTCCCCGTT 3045877 28 100.0 33 ............................ GCGCTCGCGGCCATCGTCGCCCGGACGGAGAAG 3045938 28 100.0 33 ............................ GGCCCGTGGAGGTGGATGCACCGGACCCGGTGC 3045999 28 100.0 33 ............................ CTCGTCAACTGTCATCGGCTTCAAGCCACGTAG 3046060 28 100.0 33 ............................ GCCCGCGGCGCTCAGGCCGAGGATGAGGCCGGA 3046121 28 100.0 33 ............................ TCGAGGTTCACCCACCACGAGCCCTCGTAGACG 3046182 28 100.0 33 ............................ GTTCGCGGACTTCGACGAGGCCATGAGCAGCGT 3046243 28 100.0 33 ............................ CTCGCCTACGACCAGTGGAAGCGCGACCAGAAG 3046304 28 100.0 33 ............................ CTACTCCCGCGTGAAGGAACTTGGCGAGAAGGC 3046365 28 100.0 33 ............................ CTCCGAGATCACCGGGAAGCGGGAGTGGACCTG 3046426 28 100.0 34 ............................ CGTGAAGGTCTACGGCGGCGGCGTCAGCGAGGCC 3046488 28 100.0 33 ............................ CCTTCTCCATGTACGGGACCGGATCGGTGGGGG 3046549 28 100.0 33 ............................ CCGTCGGCGGCCCGCACCCATCCGTGAGCGGGT 3046610 28 100.0 33 ............................ CACGAAGGCCAAAGCCTCCACCGTCCATGTCCT 3046671 28 100.0 33 ............................ GTGGCGACACCACTTCTCGTCCTCCTTGAGGCC 3046732 28 100.0 33 ............................ CTCGGCGCGACTCACTTCCTTGGCCGCCGACTC 3046793 28 100.0 33 ............................ AAGGGTGTCCGTGGATGCAGAAGTTTCGCGAAG 3046854 28 100.0 33 ............................ CCTGCGCACGAAAGCCGCACAGCAGGACGTGGC 3046915 28 100.0 33 ............................ GGGAGGGTAGTTGTTTGGTTAGTCAAGTGTGTC 3046976 28 100.0 33 ............................ TGGGGTCTAGTCCCGGAGCGCTACGAGCAGAAG 3047037 28 100.0 33 ............................ CGCCGTACGCGGCCACGTCGTAGGGCGGCTGGG 3047098 28 100.0 33 ............................ CTGTGAACACATACAGTTCTAACTAATCATTAG 3047159 28 100.0 33 ............................ CTTGACCGGTCGGCCGAATATGACCTAGGTTTG 3047220 28 100.0 33 ............................ CTATTGATTAGTTAGAACGTTAGAACGTTAGAA 3047281 28 100.0 33 ............................ CTGTACCGGGTAGAGCGGTATAGTTAGAAGTAA 3047342 28 100.0 33 ............................ TAGCCGAAACACCCCCGCTCGGGGGTGTCGTGC 3047403 28 100.0 33 ............................ TGGCCCTGACGGCCGAACAACCCAGGGAACCCT 3047464 28 100.0 33 ............................ CGTCGTGCAGCGACTGGCGTACATCACGCTCAC 3047525 28 100.0 0 ............................ | G [3047551] ========== ====== ====== ====== ============================ ================================== ================== 44 28 99.9 33 GTGCTCCCCGCGAATGCGGGGATGATCC # Left flank : GGTCCAGGGCATCACCGGCGAGCTGGACAACGTGGAAGGGATCCATGACCGCATGCGCGTCGGGGAGTTCTTCCTTGGCTGCGGTCTTGAACCCGGTGAACCCATCCATGGCGACCACCTCAATCNACGCGCTACCCGCAGTGTCACCGGTCTCCAGCCCGAGGGCTCGTGGGCGAGACGACGGACCACGGTGTCACGGGGAATCCCCTCACACCCACACTCGCGACACCACCGGTCATCCTCCACCACCCGGCAGGCCACCTCGCAGCGATCCGGGAGGATCCTCTGGCCTACCACCACGAGGCCGAGGTCATCCAAGCGGGCGAACGTGGTCAGATCAGGGCGCGTGAAGGTAGCGTGGGACACGTCGGGGTCTTTCAGATGGGCTGTGTAGGAACTCCCATCATCGGAAGACCCCGACCCTCACACCCACCCCGACACGCCAGCCAGACCCAAACCCCCGCTACACCCTTGATTACGAAGAGCCGCTATAGGCGTGT # Right flank : CGGTATAGCGGGAACAGAACGAGTTCTGATGGTTCAGAATTGCCTGTCGATATTTCGCGATCGTAATCCGGACACGCTTTGGTGATAACGCCAAAATGTGTGAGCGGGCCCGTAGAATTACGCTATGGGAAAGATTGAGGTGACGGTGGAAGAATGGGATATTCTTCTTGACCACAAGAGACACGGGCCGACGGTCTTGATGCGTGAGAAGGCTGAGGCAATGCTCATGCTCGCCGAAGGTGCAGGCATTGATTTCGTTGCTCGCATTGTCGGACGTCAGCCCTCCACGGTCAATCAGTGGAAGAGGGACTTTGGGGAGTGTCGGTTGGCGTCCATCCATGACTTCAAGTTGGGGAACCTGAATGCTTCCAAGCTGACTGTCTCCCAACGGGAGGAAGTCATGGAGGTCCTGTCCCAACCACCCTCCCCGGACTTGGTGCCGAGTGGGTTTTGGACGGTGCCTGCACTGAGCGCGTGGGTCAGTGACCGCTTCGAGGTGA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGAATGCGGGGATGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCGAATGCGGGGATGATCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [40.0-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.64 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 3048757-3051710 **** Predicted by CRISPRDetect 2.4 *** >NZ_LT700212.1 Actinomyces provencensis strain SN12, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 3048757 28 100.0 33 ............................ TACGTTACGCGTACGCGTACGCGAGACGCGGAT 3048818 28 100.0 33 ............................ CGATTCTCAATAGTACTGTCGATGTGTGTGTGT 3048879 28 100.0 33 ............................ CTCAAGGGCGGGCACAACTCACTCGCACACTCT 3048940 28 100.0 33 ............................ CTGTACCGGGTAGAGCGGTATAGTTATAGGTAT 3049001 28 100.0 33 ............................ TGCGCTCTAATGCAAAGGGGTGGGTAGGAATAG 3049062 28 100.0 33 ............................ CTTAGGTCAGGTTGGGCCGACCGGTCAAGTTGA 3049123 28 100.0 33 ............................ CCTCGCTTATGGCACGCGCGCAGAGAACATGGC 3049184 28 100.0 33 ............................ CCGCGTCCGCCCACCCGCCTCACTCGGGACGAC 3049245 28 100.0 33 ............................ GCGGGTCATTTCCGTGTCTCTCGGTAGTAGAAG 3049306 28 100.0 33 ............................ CGAGGACGGCCAGATCGTCGCCCAGTCCATCAC 3049367 28 100.0 33 ............................ GCTGGGGTACGGCGGGATCTCGGAGAGCGACGC 3049428 28 100.0 33 ............................ CAAGGGCCTGTCAAACGTGAACGGGGAGACCTT 3049489 28 100.0 33 ............................ CAACACCGGATGGTCCATCCGTGTGACCGAGAC 3049550 28 100.0 33 ............................ GGACGCTGACGGCTACGACGTCGAGGTGGAGAC 3049611 28 100.0 33 ............................ CTCGTCACGTCTGGAGCGTCAATGACGGACGGT 3049672 28 100.0 33 ............................ CCCGCGCGAGTGGGGCGGCCAGATCCCCCGGTA 3049733 28 100.0 33 ............................ CTTCCGGCTCTGTCCATGTGGGCCTACCTGCTT 3049794 28 100.0 33 ............................ CACCCAGACGCAGCGACGACCCCCGCCTACCAG 3049855 28 100.0 33 ............................ CCGGGGCGAAGCGTTCCCGGAACCTCACAGACG 3049916 28 100.0 33 ............................ GCGTCGAGCGGACTCTTCACGTTCTCTCTGACG 3049977 28 100.0 33 ............................ GCCTGACGGCCTCATGCAGTGGCTCCTCGGGAA 3050038 28 100.0 33 ............................ CATGTGACCCTCTACCACGGGGACTGCCTCGAA 3050099 28 100.0 33 ............................ CCCGCAAGCGCCGCGCCGCATGAAACAGCCCCC 3050160 28 100.0 33 ............................ GTACACGCGCGAGGAAATCGCGTGGGAGCAGGC 3050221 28 100.0 33 ............................ TCAAGTCACGAGCAGATTGGAGGCCCGACGTGG 3050282 28 96.4 33 ........T................... GCCCAGACCCGCAGCTTGTGCGCGGATCTCGGC 3050343 28 100.0 33 ............................ CCGATGACCCGCCGCCAGCGCACCGGAGCCGTC 3050404 28 100.0 33 ............................ CTTGTAGATGTCCTCGGGGTCGGGCCGGGGGAA 3050465 28 100.0 33 ............................ CCCCTGTCCCGTCTCGTTGTCAACACACAACAT 3050526 28 100.0 33 ............................ GTCACCGCCCTCGCCAAGCTCGTCCGCTGGGAG 3050587 28 100.0 33 ............................ TCCACTGACCACGGACCCTGCGGCGTCGGATTC 3050648 28 100.0 33 ............................ TGACCGGCTCGCAGTAGTGGAGGCAGAGGCGCA 3050709 28 100.0 33 ............................ GCTCAGGTCGAGTTCGTAGGAGACTCGCCAGAG 3050770 28 100.0 33 ............................ GGCCGCCGACCGCTCCGAGAAGTGGACCGCTGA 3050831 28 100.0 33 ............................ GTTCAGGGTCCGGTTCCGCACCGAGAAGGGGAC 3050892 28 100.0 33 ............................ CCTCGCGCGCGTTGATGCCCTGGAGCTGTCCGG 3050953 28 96.4 33 .......................A.... GGCCGCCCGCGACAAGGCGCGGAAGCTGCGGAA 3051014 28 100.0 33 ............................ CTTGGTGCGGAGCTGGTCGCCCTGGATGCTGGC 3051075 28 100.0 33 ............................ CCATCCCCAGTGAATGGGATTCCCGTATGGGAC 3051136 28 100.0 33 ............................ GCTCATGGACCAGTTGGGCATCAGTGCCTACGA 3051197 28 100.0 33 ............................ GTACACGCCAAGGGGCCATAACTCGTACTCGGA 3051258 28 100.0 33 ............................ CGCAACGGGCTGGCCGCCCTCCTTGGGAGCGGC 3051319 28 100.0 33 ............................ GTCCAGGGTGGTGCCGGGCTGGTGGCCGGGGAT 3051380 28 100.0 33 ............................ GTAGTCGGAGAGGCTGCGGAGCGTGTAGACGAT 3051441 28 100.0 33 ............................ GATGTGGACGGACTCGTCTCCATCGAAGGCGAT 3051502 28 100.0 33 ............................ CTGCGTGCCGGCCTCGGCACCCGTGTAGCCGTA 3051563 28 100.0 33 ............................ CGGCACGGTGACGGACCCGGAGTGCCTGTCCTA 3051624 28 92.9 32 ......................G..C.. CGGGTGGGAGAACGGAGCACCGTCTCCTCCGA 3051684 27 71.4 0 T....-...........TCA..C.G..G | ========== ====== ====== ====== ============================ ================================= ================== 49 28 99.1 33 GTGCTCCCCGCGAATGCGGGGATGATCC # Left flank : CGATCACGCGGCGGGCATGGTACAAGCGGGGTGAGAAGACGAAGCTGAAGGTCGACCGTCAGCGTCAGGCCCAGTCCTACATCGGGTTCCTCGACCAGAAGACGGGTAGCGTGCACCTGGAAGCAGTCGAGTGGCAAAACAGTGACACCATCATCACTGCGCTCACCAGTTTCGCACTCCACCACAAGGGCCACAAGATCACCATCGTGTGGGACAATGCAGGCTGGCACAAGTCGAAGAAACTCCGCCATGAACTCGCCACCAACCAGACGCTGGCCGGTATTCACTTGATCAACATGCCGCCCTACGCTCCCGACCACAATCCCATCGAACACGTCTGGGCAGAAGCCAAGGCCCAGATCTCCAACCTCCAACGCGACACGTTCGAACAGACCCGCCACGCGTTCGAAACATTCATCACCGGAAACACATTCCCCTACAAACTGTAAGAACTCGTTCTGTTCACGCTATAGGAACTAATGAATAGCTAGAGCAATACG # Right flank : GAGCTGCCATCACTGCCGCTCGATCCGACTCAGAAGGCTCCCCGCCGACGGAGAATGGAGACTCGGGCGTGACTGAGTCGGCTGCTCCAGCCCGTGGCGAACTTCCAGCTCCGTCCCTCGACTGCTGGACTCGTTCGGACTGCATCATGTGCTACACAGATTGGGCGAAGTGGGGCTCCTACCTTGCCGCGTCATTCGGACAGATGCAGGCATTGAAGGCCCGGTTCTGATCTCATTTGGCATGGATCCCTGTTCAGGGAGAAACAGTCCTCGGCAAGACCACAGAGCTTCTTGCGGATCGGGGGAAGCGAGCCCGACAACATGGAAGGCCACATCATGGGAGACGTCTCCGATCAGCAGCAACCGTCCCGGCTCGCAGGAACCGGCTGCTATGGACGCGCGATGTCCCTGCGCCCCACCGACGCCGACGACGTCGCCCACCTCTGGGAGTCGTGCGGGCTCACGCGCCCCTGGAACCCGCCCCAGGCCGACTTCCTGCG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGAATGCGGGGATGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCGAATGCGGGGATGATCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-11] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [61.7-36.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //