Array 1 55592-58267 **** Predicted by CRISPRDetect 2.4 *** >NZ_LGZA01000004.1 Neisseria sp. 74A18 contig_4, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 55592 36 97.2 30 .............................C...... GAATTGGCTGAAGTAATAGCTTTGATTCGT 55658 36 97.2 30 .............................C...... CTAGAGCATGAGGTGGTGTCGCACTATCAG 55724 36 97.2 30 .............................C...... GTGTCAAGAGGGCGAGTTTATCCGCGTCGG 55790 36 97.2 30 .............................C...... TACTTTCTTTATCGCCAAGCTGTTTACCTT 55856 36 97.2 30 .............................C...... AAAAGCCATAATTAATCCTTTCGACCAAAC 55922 36 97.2 30 .............................C...... TGTGGAGCAGTAGCAAAATATAATCCTCTA 55988 36 97.2 30 .............................C...... CTGGCGCGCTTATGCCGACCAGTTTTTAAA 56054 36 97.2 30 .............................C...... ATGTGTAGCCATTATAACTACACCTTTTCC 56120 36 97.2 30 .............................C...... TATCGACTGTTCCTGATGCGCCCTGAATTT 56186 36 97.2 30 .............................C...... GGCTTTCAGAATCGCCCAACTGCTTGCCTT 56252 36 97.2 30 .............................C...... ACAATCTAGACGTTATAGGTATCGTCTCCA 56318 36 97.2 30 .............................C...... TTTCCTTCTTTTTCAAGTAGTTGCGAACTA 56384 36 97.2 30 .............................C...... AATGTCAGTTATTCAATAGTGGGTGAAGAG 56450 36 100.0 30 .................................... CATACTATTAAAGCTGAGACTATTAACGGT 56516 36 100.0 30 .................................... TCGCATCCAGCTGCCCGCCCAAGGTGTCGG 56582 36 100.0 30 .................................... AAAGAGCTATTAGAAGAATACCGTAACCTG 56648 36 100.0 30 .................................... GATGGAGATATGATTGCGAGCGGTGTGATA 56714 36 100.0 30 .................................... CCGGCAAACCATGAGCAGAAGTGCAATAGC 56780 36 100.0 30 .................................... GTAATCCCCAAAGCCCATACTAGATTGTAA 56846 36 100.0 30 .................................... CACAACGTACATCCTGAGCTAACCGCCGCA 56912 36 100.0 30 .................................... TGCCGACAATGTAAATGATGACGAAGACAT 56978 36 100.0 30 .................................... GGAAATGGGGGCGGTTCGGGGTCAACAGGC 57044 36 100.0 30 .................................... AAGCTGTACATGCTATACAGACCAAGCAAC 57110 36 100.0 30 .................................... ACTGAAACTGTGCACCAGCTTCGACATAGC 57176 36 100.0 30 .................................... TATTGCCGCGCTCCTGTTTTTCCGCCCACT 57242 36 100.0 30 .................................... TGGGAACTCGTCCTTTAATCACCGTTAGTT 57308 36 100.0 30 .................................... AGAGATTATTATGTCTATTAAATACATCAA 57374 36 100.0 30 .................................... CAAACAGACGCATTAGATACAAAATAACAA 57440 36 100.0 30 .................................... GGCGCAAGCAGTTTTTTGAGCAAAACGGGA 57506 36 100.0 30 .................................... CATCGAAGCAAAACACAGACACCGACGACC 57572 36 100.0 30 .................................... AGTTCAGGCCAAATATCAAACCAGTCGTCA 57638 36 100.0 30 .................................... GAATTCATCTATCTGCCAATCATCATTCAA 57704 36 100.0 30 .................................... CAAACAGACGCATTAGATACAAAATAACAA 57770 36 100.0 30 .................................... CTTGTTCTTTTGCAGTATTTATCTGCTTTT 57836 36 100.0 30 .................................... CGTCGCAAATATCCAGCCACGTTACCAAGC 57902 36 100.0 30 .................................... CGAACACCGCCCCTTGCCAACCTTGTTGAA 57968 36 100.0 30 .................................... AAAGCCGCCGGTGCAGCCGCACAAGCCGCT 58034 36 100.0 30 .................................... CCGACGTTTTCGCGGATCAGTTTCCAAAGC 58100 36 100.0 30 .................................... AACCAGTGACTAAATAAATCATTCATTACC 58166 36 100.0 30 .................................... GGCAGAAGTAACGGTAAATATCGAGAACAA 58232 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 41 36 99.1 30 GTTGTAGCTTCCTCTCTCATCTCGTAGTGTTACAAT # Left flank : GGGTCTGAAAAGAGGCTGCGCAATTCTTTCCAAGCCAGATAAAAAATGTTTTTCAGAATCCTCATCGGTTTTGCCTTTGGGTATTCAGACGGCCTGATACTTTCGCGAACATCGGTCAAGGGGTCAAAATATGGCTAACCAGTTAATAATCATACGGTTTATATAATCAGGTCAAGCCTAAAGTTGATTCACGATATACAGTCAATCAACTTAAGTTTAGTAACAAAATCGTAGATACTGTCCTTCCCGTCAAACCGTTGCCGGCGGACATGTACTCTGCCACTACGATTGTGTTATTAAAATTGAGTGGATTGATAATAGAACCCTTGCAAAACTTGGGTCTGCAAGCGTCTCAGATTTTTTCTTGAGATTGTACAAAGGTTTCAGGCCGTCTGAAAAATCAGTTACCTGCTTTTTCAGACGGCCTTTAGCATCAAATGTTCGTGCCTTTGCTGCGAACGCTGCGTTTTTTTATGGGGCTGAAGCAGGTGCAGCAGGGG # Right flank : TACTTAAACAGGTAAGCCTTATAAAATAAGGCTTACCTGTTTTATTTTGATTAAAAAAACGGCTTCAAAAAAGCAAAAGTTGATCAGCATTGACCTTTTTTTCGCGGGGTTTGGGTTCGCCAATAAGCATGACCATACTTGCGTATTGCTTTTCTGTTACCTCCAAATAGCGTACTTGGCCTTCTTCCGGTAAATGCAGCATCAACCTTTTGTGGTGTTTCTGCAACGCGTCCCTTCCTTTTACAATGCGTGAATAAACTGATAATTGCAGCATGTGATAGCCGTCTTTCTGCAAAAATTTACGAAATTGGTTAGCTGCTTTTCTTTTGGCGGCAGTGGTTACAGGCAAATCAAAGAAAACAATTAAGCGCATAAATTTGGCCTCACTCATAATCATGTACCTTTAAGCGCAGCATTTGCGGTAGCTTTAACAGTTTGGGCTTGTTTTGGCTGACGGCCGTCTGAAAAGATTGGATGGTGCGGTCTATGGCAGCCAATAC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTAGCTTCCTCTCTCATCTCGTAGTGTTACAAT # Alternate repeat : GTTGTAGCTTCCTCTCTCATCTCGTAGTGCTACAAT # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: F [matched GTTGTAGCTTCCTCTCTTATCTCGTAGTGTTACAAT with 98% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [43.3-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.27 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], // Array 1 45147-48513 **** Predicted by CRISPRDetect 2.4 *** >NZ_LGZA01000018.1 Neisseria sp. 74A18 contig_18, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ===================================== ================== 45147 33 97.0 34 T................................ TAGTTGCTATTATCACGGCAGCATTTTTATACAG 45214 33 97.0 32 C................................ AGCGGTTGGCATTTTGGAAGCTTTTTGATGCA 45279 33 97.0 33 A................................ AGCTAAAAGTTGCAAGCGTAAATTGCATTTAAT 45345 33 97.0 35 T................................ AGGCAGTTCAGACGGTGGTAAAGGCAGCGGTTCGG 45413 33 100.0 34 ................................. ATGAATTTTTAAGCCAAGCCTATCGCGCAAAAAT 45480 33 97.0 34 C................................ TCGTATTCCTGCCTGCATATCTTGCATTTGCGGA 45547 33 97.0 33 T................................ TCTTTAAGACATGCGCCCTCATTACATTGCAAG 45613 33 97.0 34 C................................ CCACCAACGACAACACGAACGGGTCAATCATGCG 45680 33 100.0 33 ................................. TTCAATATCGATTACCCCCGAACTTAAAGCATA 45746 33 97.0 33 C................................ ACGAAAATGCCTTGAACAACTACGGAAGATTGT 45812 33 97.0 34 T................................ GGTAATATCTGCAAATACAGACGGCATTATTTCA 45879 33 97.0 32 A................................ GGCAATCTTAACAAAAATGGCAAATTGATTTA 45944 33 97.0 34 A................................ TCGAATCTTCAACAGCTTTTTGCTTATCAATTGT 46011 33 97.0 34 T................................ AAACAAGCATCCGGCCATTCTAAAACTTCAACTT 46078 33 100.0 34 ................................. CCGCGAAATCGTGGCGATGCACGGTTGCCGACAA 46145 33 100.0 34 ................................. ACGCGCCGCGACGGAGCAGATATATATAGTGCCG 46212 33 97.0 34 C................................ TACAGTTATTGACACAAGTCCAAGATGCGGCTTT 46279 33 100.0 33 ................................. ATATGTATGTGATAGTGAGCGCCGACAAGATCG 46345 33 97.0 34 C................................ TTCGGTCAATAGCGAGACCCGCCAAATAAAGGCC 46412 33 100.0 33 ................................. TCTTCCTCAGCCTTTTTTACCTGTATTTCACGG 46478 33 97.0 34 A................................ AACGAGCATAGTGTTATTTTGGCCGCCGAAATGG 46545 33 97.0 34 A................................ ATTTTAAAAAGGCCGTCCTCATTTTTAAGCATCA 46612 33 97.0 34 T................................ GTATTGGCCGGCGGCTTTGAGGTTCGGTGTAAAA 46679 33 97.0 34 C................................ ATGCGATACGATTAATGCTTATGCCGCAGATTGT 46746 33 100.0 34 ................................. TTCATTAATGTTTTATCCCCTGTCCTGCCCGCCT 46813 33 100.0 34 ................................. ATGATTATTTCCTTTATAAAAAGTGTTTAAGACG 46880 33 97.0 32 C................................ AATGAGTGGGCGCCGCTCCCTGAGAATCAGGG 46945 33 100.0 32 ................................. AGCCAAAATCCCTGTATCTATTTATCAAGCGA 47010 33 97.0 33 T................................ AGACGGCCTATGTGGCGGGTTATTGACTAAACA 47076 33 100.0 33 ................................. AATCATGCGGTAAAGCGGCCAAAGATGCGGAAA 47142 33 97.0 33 C................................ TTGAAAAATATTGCTGCCATCGCCGCTAATCTG 47208 33 97.0 35 C................................ AGTTTACAGCGAGGCGATGAAGGCCAAAGGCGGGA 47276 33 97.0 34 A................................ TGATGCACATGGCCGATTTGAATATATTTATCCA 47343 33 100.0 33 ................................. ATAAAAGAAATTACAGAGATGCAGGCACAACTA 47409 33 97.0 33 A................................ GGCAGACAGACAACAGCCCAGCCGCTGGGTGGG 47475 33 100.0 33 ................................. TTTCCAAGCGAAGCGAGCGGCAGCCGCGTATTG 47541 33 97.0 34 A................................ AGGGGCAAACGGTCAGCCCTTAAAATCATGCGGA 47608 33 100.0 34 ................................. AAAACAAATACGGCATTACCTTGCCCGCGTCTTT 47675 33 93.9 37 CC............................... CATGTGTGCCACTGCGACGGTGGCTCATCCAGCGTGA 47745 33 97.0 33 .C............................... AGGTGGATAAGGAAGGCAATATCAGCACCGCCC 47811 33 97.0 34 .C............................... CCCAGGTGCGCGGATACATCTGCCATCAATTCCG 47878 33 93.9 34 CC............................... CTCATGCGTTAATGGCACACCGCTGAATAACGGC 47945 33 93.9 33 TC............................... AGGTACATTACCTGCCACACAATCGCAAAGTTC 48011 33 93.9 32 AC............................... AACAAATAGCCAATAAAAGAACAACTCTCGCA 48076 33 97.0 35 .C............................... AGGAAATTGGAATAAAGGAACTATCATGGCTAGGC 48144 33 93.9 34 CC............................... AGCAATGTGAAACTAAAATGCGTATAGCTGAAAC 48211 33 93.9 36 TC............................... CACTAATTGTCCTTTCAATTACAGGTAAATTATAAG 48280 33 93.9 35 CC............................... GGGGATAGGCGGCACGGCCTCGCTGTTGCCCTGCT 48348 33 97.0 34 .C............................... TAGCGTCTGTTGTAAACAACGTGCAGGCCGCCTA 48415 33 93.9 33 CC............................... AAAAGTTGTACTCAAAAGATGGCGAAAATTACA 48481 33 93.9 0 AC............................... | ========== ====== ====== ====== ================================= ===================================== ================== 51 33 97.2 34 GTCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC # Left flank : AAATAAGGGAAAATGGCGTGTTGATGTTGATTACTTATGATATTTCGCTGGAAGACGCAGATGGGCAGGCGAGGTTGCGGCGCATAGCCAAACATTGCTTGGATTACGGCGTGCGCGTGCAATATTCGGTATTCGAGTGCGACGTAACGCCTGATCAGTGGGTAAAACTGAAGGCCAAATTGCTCGACACTTACCAGCCTGAAACCGACAGCCTGCGCTTTTACCATCTGGGTAGCAAATGGCGGCGCAAGGTGGAACATCACGGCGCAAAGGCGGCGGTGGATGTTTTTCAGGATACGCTGATCGTGTGAATCGCTAACCCGTGGTTCTCATGAAAATGCGGGGTGGTTAGCGATGTAGGATTGTTCTTTAACAATCAGGAAATTAGCAAAGCGGGTGTGGCGGAATAAGGCTGTGTTATACTCGCTTTTCGCGTTTTCAGGGGGCTTTAGCGAATCAGGGCCGTGCAAGCCTTGATGGATAAAGGTTTCCGAGAAGGC # Right flank : CGATATCGAAGGTTTGGTTTTGAATACCGTATATGCCAGCCGCCTTCGGGCGGCTACATATTTATGCTTCTTTGTTAATTTCTTTCAGACGGCCTTGATGTTTTCTGTTTATGTTGGAAATGTTATATCTTTTTGAAACCAAATGATTTTGCGTGCATCCACCCATAGCGGCCATTCGCTGCCGGGTTGTAGGTTGAGATTATGGGTTTCCGAGGGATCGAGGTGCAGCTGTATTTCGCCGTGTTGCGGGTGGATGAGTGTGAGTAGGCTGCGGTCGGGCAGGCGGGTGTGGGCGGTGATTTTGGCGTTTTGTCCTTGAGGGTGGTTGAAGTGTATGGCTTGTCGGGGAATGTAGCGGGTGTCGTTGACGTTGTCGGCGCCGATCAAACGGGCGGCGCGGGCGTCGGAGGGGGCGGCGATGAGTGCGCCGGGGGCGGCGAGTTGGATGATTCGGCCGTTGTGCATGAGGGCGATTTGGTCGGCAAGGGCGAAGGCTTCTT # Questionable array : NO Score: 5.44 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.32, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched TCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.40,-4.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [46.7-51.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 2635-2936 **** Predicted by CRISPRDetect 2.4 *** >NZ_LGZA01000017.1 Neisseria sp. 74A18 contig_17, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ==================================== ================== 2635 33 100.0 33 ................................. ACCATAACTGATTAAAAAAAAATAGTTGACAAG 2701 33 97.0 36 ................................T GGCACAAAGTCTTGAACAAGGTGCGTTGTCTTCGGC 2770 33 97.0 35 ................................T AATTTTCGCGGGCGCCGTTTGATTAGGGTTGATAG 2838 33 97.0 33 ................................G CCCGCCGTGTGAATCCGACGATTTGCGATGTGC 2904 33 100.0 0 ................................. | ========== ====== ====== ====== ================================= ==================================== ================== 5 33 98.2 34 TCAGCCACCTTCGCGTGGCTGTGTGTTGAAACA # Left flank : TGCTTATCAGAATGCACCCGCATCGGCTTTATCCGATGAAACCGCCACCCCGTTAATCTAACCTTATCTCTGCTTAGCTTGGATAGAGGCCGTCTGAAACCCGCTTTTCAGACGGCCTTCACTCTAAAAGCCGCAGACGCAGGTTTTGCAAAGGTTTCGATTCGTTTGGCAACTATAAGTTAATCCACTTAAGTTTAATAACAAAACCGTCATACTCGGGCTTGCCCCGAGTATCTCGAGTTTCAGCAAATTTAGGGGATATTCGGGTCAAGCCCGAGTATGACCGATGTACTATAGAGTGATGCCGTCTGAAAACGGCTATATCGCGCCAACCTGCGGTTCACATCAAAACACACCGAGATTAGCGAAGTATTTTTGTTTGGCGATTCAAACCGTTGCCAGTGCATAAGCCGTGATATAGTTCGGCATGGCCTTTTTACAACCTGTTTAGCGCAAATGATGACTTGAAGCCGCGTGACACAAGGGATGGGGAAAGGGCT # Right flank : AGGCTTTAATGCTTCACGGCCTTTTTGAGTTGTTGTAAGGCGGCGCGCGTTTTGTCACTACTTTGCATTTTTTTTGTCATCCAGTAGCATTTAGGGGCATGACAAAAAAACCGCCAAAGGAAGTTTTAAACCCCGATTAAAGTCGGGGTTTTTGGTATTTAAAACTTGTACACCAAGTTGTCCTCATACGAGGCATCCTTGCTTAACTTTGCCTGCACGGTTAGGCGTGTGGCTTGGTCGAATGCCTGCCAATTATCCAGCTGCATTGATACGATCGTATTGATGTAGTCGATAAACTCGGAGCGGGTGGAACTGAAAAACAGGTACGGCGGGCGGGTTAGGCTTACCAGCTTTAGATAGTCCACCAAGCCGAAGCGATTGGCTTGTGCGTAGGCGGCCTGCGTGGTGGATAAATACGGCGGGTCGAGCACAAGTAACGCCTGCGGGTTGTCTGAAAATTGTGGGATTAGGTCTATATAAGACTGCCGCGTTATCTCCAA # Questionable array : NO Score: 5.89 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TCAGCCACCTTCGCGTGGCTGTGTGTTGAAACA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,9] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GCAGCCACCTTCGGGTGGCTGTGTGTTGAAACA with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-1.40,-2.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [48.3-51.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.74 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 42030-43266 **** Predicted by CRISPRDetect 2.4 *** >NZ_LGZA01000017.1 Neisseria sp. 74A18 contig_17, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ===================================== ================== 42030 33 97.0 34 ................................T TTATCGGACGGGGGGGAACATGTTTGGTTACAGC 42097 33 97.0 34 ................................A AGGTATGCGACGGCGTATTGGGGTACGCCGTTTT 42164 33 100.0 34 ................................. GCACCAGCGCCAATTGGAATAACGAAACCCTCCT 42231 33 100.0 32 ................................. CGCCCCTTTTGAGTTGTTGAGATAGCATCCGC 42296 33 97.0 34 ................................G ATATATCCGTCATACATTAGATTTTGCTGCGATT 42363 33 100.0 34 ................................. GTCAAAAGACATCGGAACCGCGCCGCCGCCCTGC 42430 33 100.0 35 ................................. AAACTGTTGAGAATATGAGCTAACACCATCAACAG 42498 33 97.0 34 ................................G ATGTGGTCGACGACACTTTGCGCGGCTCGCACGC 42565 33 100.0 34 ................................. GACTGGTACGGTATGAAGCGTTATACCGTCGAAA 42632 33 97.0 34 ................................G CTTTGGGTGGCGTTGCGCATCAAATTTGCCGTTA 42699 33 97.0 37 ................................T CGTAGTAATGATAATTGGCTAGCCGACTATAAATCAG 42769 33 97.0 33 ................................G TTTAAACCGCCGCCAATACAAACGACGCCATAA 42835 33 97.0 33 ................................T CTTGGCTCAAACCGTTTTTGTTGGGGCATGTTT 42901 33 97.0 33 ................................G GTTTTGGCGCGGTAGCCGTCGTACTTGTCGAGA 42967 33 93.9 35 ...........T....................G GAAAATGCACTCACGAATATGCAGGAATGGCAGAA 43035 33 97.0 34 ................................A ATTAGCTTTTCAATCAAACCATCAAACATGCGGG 43102 33 81.8 33 C.....G.....AG.C................A TTCATTGTTTTATTACGGTTATGCGGATTCTGA 43168 33 84.8 34 C.....G.....AG.C................. GCATCAACAAAAACAGCGGTGTATTGGTGCTTTG 43235 32 87.9 0 .............A.....C....A..-..... | ========== ====== ====== ====== ================================= ===================================== ================== 19 33 95.7 34 TCAGCCACCTTCGCGTGGCTGTGTGTTGAAACC # Left flank : ACCCAAACCGCTGCTTCTGCACGCGCGTCAAAGGCGACAGCATGTTCCCCACTTTAATCGACCTTGGCACGGTTTTATGGTGTGCAACTGCCAAATACACAGAGGAAGGTATCTATCTCTTCCGACAATACGACGAGATCAGAATCAAACGCCTACAACGCCTGAATGCCCACACCTTTAACATTATTAGTGATAACCCGAACAAAGGGATATATCCAACAACAGAGTTGGATTTATCCCAAACCGAGCCGCATGATTTCGAGATACTTGGACGCTACCTGTGGAGCTGTGGCATAGCCAAATAATCGAATCTGATAATTCCCCGATTATTCCATGACAAAAAAAGCGCAAAAATGATTGAAATATGCTCATTTTTGCGCTTTTTTTTGCGTTTTAAATTTTCACCTGATTTTTTCGTTATTTTTTGATTTCCTTAAATTTTTCGCGTTTTATGCTGTTGTATACCACATGACAAAACTAACACCACCCCACAGTTGTCG # Right flank : CTTCTCAAAACACAACAGGCCGTCTGAAATGTTCAGACGGCCTGTTGTTATTTCAAACGCCTTAATCAAATACGTTTCGCCAACGCTTCGGCTTTGCCCACATACAGCGCGGGTGTTAAAGCCAGCAGCTGCTGTTTGGCATCGGTGGGGATGTCCAGCGATTCGACAAACACTTTCAGCACTTCGGGCGTGATGCCGTCTTTGCCGCGGGTGAGGTCTTTCAGTTTTTCATACGGATTGGCCACGCCGTAGCGACGCATCACGGTTTGAATCGGTTCGGCCAAGAGTTCCCAAGTGGCATCCAAGTCGGCGGCTAAGGCGGCGGGATTGGCTTCGAGTTTGTTCAGGCCGCGCAGGTGGGCGGTCAAGCCCAGCACGGTGTAGCCTGCGCCCACGCCCATGTTGCGCAGCACGGTGCTGTCGGTGAGGTCGCGCTGCCAGCGGGACACGGGCAGTTTTTCCGAAAGGAAGCCCAACACGGCGTTGGCCATGCCCAAGTT # Questionable array : NO Score: 5.43 # Score Detail : 1:0, 2:3, 3:0, 4:0.79, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.38, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TCAGCCACCTTCGCGTGGCTGTGTGTTGAAACC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,9] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GCAGCCACCTTCGGGTGGCTGTGTGTTGAAACA with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-1.40,-2.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.74 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //