Array 1 99-1103 **** Predicted by CRISPRDetect 2.4 *** >NZ_PTOI01000216.1 Escherichia coli strain LN_F1_1 NODE_216_length_1220_cov_11.5828, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 99 29 100.0 32 ............................. TTACCGCTCTACGCCGCCCCGCCAGCGCTGGT 160 29 100.0 32 ............................. AGCAGCCAGTGCCGGTAGTGCCTGGTGATGGT 221 29 100.0 32 ............................. GCCGGGTTAAGAAGGTGTATGGATGGCCCGGA 282 29 100.0 32 ............................. GGCACGGAATTGTTATGCTGTTCCCCTGACCG 343 29 100.0 32 ............................. ATCCGCCGCCGGTTAACGCTGGACCAGTTCCG 404 29 100.0 32 ............................. GGCGAGTCCGTCAGCGGTGCGCCGCTGCAACA 465 29 100.0 32 ............................. CGACGTTTTCTAATATCACCCAGCAATCAATT 526 29 100.0 32 ............................. ATTTCATCAAAGCATTAAGGGATGGAATAAAG 587 29 100.0 32 ............................. TCATGAATATGGGGAAAACGAACAATCTGTTT 648 29 100.0 32 ............................. ATGACCATTGGTGAACGCATCCGCTTTCGCCG 709 29 100.0 32 ............................. CGTCCGCGGCTGCAACTGATGCCGGGGCTTAT 770 29 100.0 32 ............................. AACCTTGTCGGGTCGCCCGTGCGTCATGATGA 831 29 100.0 32 ............................. ACTGCAAAGTTCTTCACGCTGGTTTTTATGCA 892 29 100.0 32 ............................. CCAGCCGAAACAACGCCAGCAAAATCGACCGC 953 29 100.0 32 ............................. GGATATAGAGCGGGTACTCGAGCGAAGCGGGG 1014 29 100.0 32 ............................. TTTTTGTTCTCTTCAAAACGCCGAACAACCAA 1075 29 93.1 0 ............T.....A.......... | ========== ====== ====== ====== ============================= ================================ ================== 17 29 99.6 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAATTAGCTGATCTTTAATAATAAGGAAATGTTACATTAAGGTTGGTGGGTTGTTTTTATGGGAAAAAATGCTTTAAGAACAAATGTATACTTTTAGAG # Right flank : GACGCACTGGATGCGATGATGGATATCACTTGGAGTTCCCCGCCCCTGCGGTAGAACTCCCAACTCCCATTTTCATACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAGCGGTAG # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 83281-84511 **** Predicted by CRISPRDetect 2.4 *** >NZ_PTOI01000004.1 Escherichia coli strain LN_F1_1 NODE_4_length_203586_cov_56.2197, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 83281 29 100.0 32 ............................. GAATCATGATTCCGGACGACGTGCTGGCGCGA 83342 29 100.0 32 ............................. CCGCTGCGCTGGCGTCAGGCGTACCGGTGGTG 83403 29 100.0 32 ............................. CTATTTTTACAGCGAGTTTTGCAACAAATTTT 83464 29 100.0 32 ............................. AAATTAATTTTGAAACGGGTGTTGATGGTGAG 83525 29 100.0 32 ............................. CCTCGCTGTAAATTCCAAAAACGATCTCTATA 83586 29 100.0 32 ............................. ACAGTACCGGAGTTTGACGGTGCCAACGGCGG 83647 29 100.0 32 ............................. ACAATCAGGGAACGATTGTTGACACTGTAAAA 83708 29 100.0 32 ............................. ACCTGAACGAAACGCAAAATAGTTTCTTTATG 83769 29 100.0 32 ............................. TTCGTTTTTCGCAGCATTAACTTTTTGCCGCG 83830 29 96.6 32 ............................T TGATCCGCGACCGCCAGATGGCGCAGCCTGTC 83891 29 100.0 32 ............................. GTGCGCCAGCTATAAAAAACTCACCATCAACA 83952 29 86.2 12 ...............C.A.C.....G... CAAACAGAGCCG G [83976] Deletion [83993] 83994 29 100.0 32 ............................. ATCCCCTGCGTCCTCTTTTGAATAATCGCGGC 84055 29 100.0 32 ............................. CGAGCGCCGTTGGCTACTGGCGTAGCCGTGGA 84116 29 100.0 32 ............................. CAAAAAAATAATATCCGGCAGTCTGTACGGTA 84177 29 100.0 32 ............................. TCGGTTTGCGCGTATTGTTGTTCGGGGTCTAT 84238 29 100.0 33 ............................. TAGGTAAATCACAGCTATTTGATAAGGGCGTGT 84300 29 96.6 32 ............................T GTGTTTGCGGCATTAACGCTCACCAGCATTTC 84361 29 100.0 32 ............................. AATAGCAATAGTCCATAGATTTGCGAAAACAG 84422 29 100.0 32 ............................. GAGCCTGACGAGACTACTGAGGCCGTTCTGTC 84483 29 93.1 0 .A..........................A | ========== ====== ====== ====== ============================= ================================= ================== 21 29 98.7 31 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : ACCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATATTGAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTATATTTTTTAAGCTTGTTATTCATTGGTTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTT # Questionable array : NO Score: 6.12 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:-0.07, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 110058-110452 **** Predicted by CRISPRDetect 2.4 *** >NZ_PTOI01000004.1 Escherichia coli strain LN_F1_1 NODE_4_length_203586_cov_56.2197, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 110058 29 100.0 32 ............................. GCCGGGTTAAGAAGGTGTATGGATGGCCCGGA 110119 29 100.0 32 ............................. GGTTACGCCTGCACAGAGTACAATGCGTGGGG 110180 29 100.0 32 ............................. CGGTGATGCGCGGTATCGATCAGCATCCGGCT 110241 29 100.0 32 ............................. GCTCATTTCAAATGGTCAGGTCCGGTGGTTTT 110302 29 96.6 32 ............................C TGATCACATCATGTTTATTCGCGGTCGTATTG 110363 29 100.0 32 ............................. CCAGGACAGGCCGTGACGGTTGCCATTGAGTC 110424 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 7 29 99.5 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CGTGCTTGCTGCTGGAGAAATACAACCGCCGGCCCCACCTGAAGATGCACAGCCTGTTGCCATTCCGCTTCCCGTTTCTCTGGGAGATGCCGGACATCGGAGTAGCTGAGATGAGTATGTTGGTCGTGGTCACTGAAAATGTACCTCCGCGCTTACGAGGCAGATTAGCCATCTGGTTGTTGGAGGTACGTGCAGGGGTATATGTAGGTGATGTATCCGCAAAAATTCGTGAAATGATCTGGGAACAAATAGCTGGACTGGCGGAAGAAGGCAATGTAGTGATGGCATGGGCAACGAATACGGAATCGGGATTTGAGTTCCAGACATTTGGGGTAAACAGGCGTACCCCGGTAGATTTGGATGGTTTAAGGTTGGTATCTTTTTTACCTGTTTGAAAACAAAGAATTAGCTGATCTTTAATAATAAGGAAATGTTACATTAAGGTTGGTGGGTTGTTTTTATGGGAAAAAATGCTTTAAGAACAAATGTATACTTTTAGA # Right flank : GGACGCACTGGATGCGATGATGGATATCACTTGGAGTTCCCCGCCCCTGCGGTAGAACTCCCAACTCCCATTTTCATACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAGCGGTAGCATTATCCGCATAACATCACGGCAGCGACGTTCTATTCTTCCTGGAAGTGCCTTATCAATATGTTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCAGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAATTTGTTGCTTCTACCGAAAGTACGGCAATACCGGCTTTGTCGAAAACTTCGGCGTCATTACAACAGCTAGTACCCTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCAATTCCATGACTACGCGCAATTGCCAGTGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCACTGTTGAAATACAATTTATCGCCAACA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //