Array 1 12762-14805 **** Predicted by CRISPRDetect 2.4 *** >NZ_BCMK01000005.1 Streptomyces acidiscabies strain a10, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ================================================================== ================== 12762 37 100.0 36 ..................................... CGGTGATGTACGACGCCTCGCACTTGCCGTACGACG 12835 37 100.0 36 ..................................... GGCTGCACCTCGGTCGGCGTGAACGCGGGCCAGCTC 12908 37 100.0 36 ..................................... AGCCCGTACTTGCGGATGTACGGCTTGTGGATCTCG 12981 37 100.0 37 ..................................... CCGTTGCCGGCCCACTGGTACGGCAGGCCGTTCTGGG 13055 37 100.0 35 ..................................... CCCCTCGCTCAGCACGTTAGACCCTAGGGTCTATG 13127 37 100.0 35 ..................................... GCGCTTGGGGTCGGTCGCGTGCCGCTCGTACTCGG 13199 37 100.0 36 ..................................... CCCAACCCCCCCACGTACGACCTCTACCCGAAGGAC 13272 37 100.0 35 ..................................... GGCAGACAGGGTGGTCACCCCAACTACCGCGCTGA 13344 37 100.0 37 ..................................... CGTACCGGGCGGGTGGCGTGGGGACCGAGGCCCGGCA 13418 37 100.0 36 ..................................... TACAACCAGGTCGTGGTCGAGACGGTGTGCGCGCGT 13491 37 100.0 36 ..................................... CGGTCCAGGTCGGTGTGTGCCGCTGGGGTGCGGCGG 13564 37 100.0 38 ..................................... CACAGCGACCGCAGCCCGTACCTGGCGCACTCGCGCTC 13639 37 100.0 35 ..................................... ATCTGTCTGTGCCGGCGCTCCGCCAGTACGACGTG 13711 37 100.0 37 ..................................... CACCGTGCGCCGCAGCCAGGCGAACCACGCCTCGGCG 13785 37 100.0 38 ..................................... ATGTCGGTCGGGGCGGCAGCCGACTTCCGGACGCCGGT 13860 37 100.0 37 ..................................... CTGCGCTGACCTGCACCGGAGCCCCGGTGTCAGAGAC 13934 37 100.0 36 ..................................... GACGCCGCCAGCGAGCGCCGTCCGCTGGTCGTCTAC 14007 37 100.0 38 ..................................... ACGGCCATCGGTAGCCTCCGCGTCGAGTACGGACCCGA 14082 37 97.3 36 ........T............................ AAAGCGGCCTGCGCGCGGGCGGGGTTGACGCTGACG C [14105] 14156 37 97.3 36 ...............T..................... GTCGCCGGGCCGTACGGCAGTCAGCGCGGCCCGGCG 14229 37 100.0 35 ..................................... GGGATGAGCGTGCGCGGCCAGTCCCTCCTCACCGT 14301 37 91.9 37 ...T............A...C................ ACCGGCACGATCGCTCACACCTTCTTGCCCCAGGGGT 14375 37 94.6 35 ........T.....T...................... GAGATGACCTACGAGGAGTGGATCGCTACCCAGGT 14447 36 89.2 36 ........T....-....A.C................ ATCCCCAGGAAGTTGCTGACCGTCGTGTACCGGACC 14519 37 91.9 66 ......C......C......C................ AACCGGAGCGTTGAACGGTTCTTCGGCAACGCCGCGTGGGCGGACCACTTGGGAGCCGAACGCCTG CC [14535] 14624 37 86.5 35 .....A....T...T.....C.....G.......... GCCGTCAACCGGACCGTGGCGACGGTGACCGGGAT 14696 37 86.5 36 ........T.T.....A..AC................ AGCGCGGTCCAGGCTACCGAGGCACAGCACGACCTG 14769 37 86.5 0 ..C.......T.T.......C.C.............. | ========== ====== ====== ====== ===================================== ================================================================== ================== 28 37 97.2 37 GTGGCGGTCGCCCTCCGGGGTGACCGAGGATCGCAAC # Left flank : TCCTCCGCCACGGCGCTCCACCGCACGAAGCCCGTCCTGCCACGCACACGAGCCTTTTCCCACGTCATGGACCAAGGCCAGGTACTCGGCCAACTCCCCTACCCCGAACACCTCCCCGAACTTCCGAGCCAGAGCCGCTGAACCCCGCAGATGCGCTTCCAGCGAATGCTGCTGCCCCGACACGTCGCTACGGCTGTGCGCGATCAGCACACCCCCGGACCCACCCACAACAGTCCCTCCCGGAAGACGCAGGCCCTTTCGCCGAGCCTTGGTGGGCCGAAACGTACACACCCTCACTGACAACGCCCGCGAAGAAGCCCTCAGTTCCGGTTAGGCTCCTCACCTCGCCGTCGAATCACCGAACGCCATGCTTCGGAACCTCTAGTGCACACGCGACACGCGGAACGCACCTAAGGAAAATGTCCACTTTGTTGGTGTCTGCTTCGCCCTGGACTTGTTCCCACCTCCACTCGATACGATGAATGTGCTGGTCAGCCAGC # Right flank : CAATTTGGAACTGTGCGCCAACTTGTCCGGCGGTCACATGCCACAGTCGGCCTCTGAGCGATCGATCCACTGACGATGGGAAATAAGCGGCACCGGCGGCATATTCGTTGTCCGGAGGTGAGTGTCAGGCGGATTGTTTCTGCTCTTTTGAGGTTCTTGGTAGTGGCGATCGCCGCATATTTGCTGGTGATGTCGTGTTGCCCTGCGGGGTGGAGCGTTTGGCTAGATGCGTGCGCGGAGACGTGGTAGGTGCCGTGTTGGGGAACTGTCTCCCGTTGGGATGAGCGGAGCTGGCAGCAGGATTTCGAACCACGTCGTCTTTCCCGGCGGGTTCGTCTGAGTTCCCCAGATGTCGGCAAGTGCCTCTACGAGGAGGAGGCCACGGCCCCCTTCGTCGTCCGGCCCTGCTTCAGTGACGGTCGGCAACAAGGAGATCATGTCGGTGACTTCGACACGGAGACTCTTGCGAGTGCGTGTCACGGCGATGCCGCACGGGGCGC # Questionable array : NO Score: 6.05 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:-0.06, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGCGGTCGCCCTCCGGGGTGACCGAGGATCGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGGCGGTCGCCCTCCGGGGTGGCCGAGGATCGCAAC with 98% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-17.10,-11.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-43] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [41.7-41.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 32935-32662 **** Predicted by CRISPRDetect 2.4 *** >NZ_BCMK01000062.1 Streptomyces acidiscabies strain a10, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 32934 29 100.0 32 ............................. TGCGGTTCCAGAAGGTCTACTACCAGGCCCTC 32873 29 100.0 32 ............................. CGCTCCTTCTCGTCCGGGATCGACGCGAGGAT 32812 29 100.0 32 ............................. CGTCTTGGTCGGGGCCGTCTGCTGTCCGCGTC 32751 29 100.0 32 ............................. GTCCACCCCGATGAGCACTGCGGCCTCTACCA 32690 29 96.6 0 ...........A................. | ========== ====== ====== ====== ============================= ================================ ================== 5 29 99.3 32 GTGGTCCCCGCGCGTGCGGGGGTGGTCCC # Left flank : ACGCCTCTCGCGTCACGGGGTCCTGAGCCGTCGAGCGACCCGGCCCAGGACCCCGCCCCCGAGCAGGACCGCGCGGCGGACGCGGAACTCGCGCGCCGGCTTGGTGGTGCGGGGTGAACTCTGGTGTGTACGGGGCTGAGGTTCACGTGGGGGTGCAACCGTCCAACTGACGGCAGGGGATGGGCGGGGGCCGAGGGTCTGGGCCTCGTGCGGGGTTCGTCGCCGGTACGGGGATGGCATCCACGCGAAAGCGGCCACCGGGGGTTCGTGGGGCACGCGGGGTCAGGGGCCGGAGCACGAGTCTGGGAGCGTACGGTTCGGGACGCGTTGGGGGCGTCTCGGGGTAGGGGTTGTGCGGTATCGCGTCCGCGCGAGGTTCTGGCGGTGCACTATGAGGGGCGATGGCATCTTCAGGGAGGGACAGCGAGGGATAAATGTCCGCTTCTCTGGAAGTGACGGATTCCGGGCTGCCGGCGGAGTAAAGCATCAGGTCGGGGTCT # Right flank : GCTCACAGGGTGGCCTTGCTGACGGAAGGCGCGTGGTCCCGCACGGGCGGCGGCAGCCGCACATAGACACAGCCCCGCGCCCCTAGGTGGGTGGGGGTGATTGTGCTTCGTCGAGTGCGGGTGCCTTGTGGCTGGTCGCGCCCGCGCGGCGGCAGCCGCACATAGACACAGCCCCGCGCCCCTGGGTGAGTGGGGGGACTGTGCTTCGTCGAGTGCGGGTGGTGGGGCGGCGCGTGCCCTTGGGGTGGGTGTGCTTGAGACTGGTTCCGTGAAGAGTCAGAACACTCCCTTCGAAGGTGGGCCCATGGACGGGCGTTCCCTTCCCGTCCTTCTCGGGCCTACCGGACATCCGCCCAAGACCTACCGCATCCCCGTGCCCGACAGTGCGGGTGGGGCTCCCGTTGTGCTCGTCTATCGGCGGGTGCCCCGAGGGCACAGTAAGCGGCTCGGTGTGCCTACCGGGTGGAAGTACGAGTACGACCCCGACGGCAAGAGTGGGT # Questionable array : NO Score: 6.02 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGTCCCCGCGCGTGCGGGGGTGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,0] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGGTCCCCGCGCGTGCGGGGTTGGTCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.30,-13.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [23.3-38.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 35828-35571 **** Predicted by CRISPRDetect 2.4 *** >NZ_BCMK01000062.1 Streptomyces acidiscabies strain a10, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ============================================================================ ================== 35827 29 100.0 32 ............................. AGGTCCAGCTGCCACCCGCCGTTCATCCGGGC 35766 29 100.0 32 ............................. GAGCCGGCGACCTACACCCCGCCGCCGTTCCC 35705 29 93.1 76 ..........................AT. CGCCTCGCTTCCAGTTGTCCGAGGTCCGGTTGGCGGAGGAGTTCGGGGTGAACCGGGACACCGTGCGGAACGCGAC A [35681] 35599 29 62.1 0 .C....GTT...G.A.AA.......AT.A | ========== ====== ====== ====== ============================= ============================================================================ ================== 4 29 88.8 47 GTGGTCCCCGCGCGTGCGGGGGTGGTCCC # Left flank : GGTGTTGGCCAGTGGGGTAGATCGAGCCGTGCGCTGCTGTCTTCGTAAGCGACGGGCTGCGCCGCACCCCCGGCACCCCGCTTCCCGCCGTACGCGACTCACCCGCCATGCCGGTGCGGCGGGGCGAGCCCGCCGATTGCGGCTCTCCCGCCGTACAGGTCAGGCGGGGACGGGCTCTCCGTTCGCGACTCTCCCGCCGTGCGGGGGGGCGCCGATACGGGGATGGCATCCGCACGAAAGTGGCCACCGAGGGTCGTGCGGCACGCGGGGTCAGGGGGGCGGCACCGTGTCGGAACACGACTCTGGGGACGTACGGTTCGGTACGCGTTGGGGGCGTCTCGGGGTTGAGGTTGTTCGATATCGCGTCCGCGCGGGGTTCTGGCGATGCACTATGAGGGGCGATGGCATCTTCAGGGAGGGACAGCGAGGGAGAAATATCCGTTTCTCTGGAAGTAACGGATTCCGGGCTGACGGCGGAGTAAAGCACCAGGTCGGGGTCT # Right flank : CGACGACTCCGGCGTTGGGGTCGTTCGTGGCGGATGAGCGGCCGAGGGGCTGAGCTTGGGGTGGGTTGCCCCGTCCGTATGCCGTGGGGGCGGCGTACGGACGGGGCGGGGAGGGCACGGTGAGCTGCTGTCCGCCGTGCCGTGGATTCAGGGAGGCGGCGGGCCGTTCGAGGCGATCCCCCAGACCAGCGCCGACGCCATCGACAGCAGGACCGTGACGTAGGCGATCGTGCGCCAGCGGTCGTTCACGGGGTCGCCCTCGGGATCAGCTCCTCGTAGTGCTCGCACAGGGCGTTCAGGGAGTGGGCCAGGCGCAGGGCCCTGCGGTACTCGCCCTGCGGGTGCGGACCGGTGCCGAGCTTCTGGCGGGCCTCACCGATACAGGCCAGGCAGCAGTAACGCAGGACGCTGTCCTTGCCGAGCTTCAGGGCGGCTGCCTCGACCTCCGGGAGGAGGAGGTGGAGGTGGCCGCGGAGGGTTTCGATCAGGGTGGGGAGGTC # Questionable array : NO Score: 3.90 # Score Detail : 1:0, 2:3, 3:0, 4:0.44, 5:0, 6:0.25, 7:-1.39, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGTCCCCGCGCGTGCGGGGGTGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,0] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGGTCCCCGCGCGTGCGGGGGTGTTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.40,-5.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [30.0-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,5.18 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 59334-59061 **** Predicted by CRISPRDetect 2.4 *** >NZ_BCMK01000067.1 Streptomyces acidiscabies strain a10, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 59333 29 100.0 32 ............................. GAAAAAAGCCAGGTCGGAAACCATTCCGCCGT 59272 29 100.0 32 ............................. CCGGGCGTGTGCGTGACCTGGACCGTCCGCTC 59211 29 100.0 32 ............................. CCGGGCGTGTGCGTGACCTGGACCGTCCGCTC 59150 29 100.0 32 ............................. ATCCCCTCTCGGCCCGCGAGAGGGGTCACGCT 59089 29 79.3 0 ............T........G...GGAG | ========== ====== ====== ====== ============================= ================================ ================== 5 29 95.9 32 GTGGTCCCCGCGCACGCGGGGATGTTCCC # Left flank : GTCAAGCTTGCCGGGTACGTCAACACCGCCGCCGGCCGCCGAGCCCACACCGAACGCACCCTCGTCCTCAGCCTCTACGGCATCACATGATCAAACCGGACGACCCGGGCAAACGCCGGGGCCCTGGGGCTGGCGCGGGTTGTCGGGTTGAGGTGGGGGCTCGGCGTGGATGTGGGGTGGGGCGCTGAGGGGTTCGACGGAGGTGGGTGGGTAGGGATGGCGGGGATACGGTTTGGGCCGGGGGTTCGGGGAGGGGCGACGAAATGTCCGGTTCCCGGGAAGCGATGAGAAACGGTGGCTCGCCTGGGTAAAGGGCCAGGTCATGGAC # Right flank : AGATTTCCCTGTTGGCCTGGAGCGTCCAATGCGGTCAGCGAAATTGAGGGAGGCGGCTGTCACGGTGATCGTGATGCGGTCTGTGGACGGTTAGGGCGAGGTTCAGTGGGCGGCATGCGGAGTCTTTAGGGAGACCCGATAATCAGGCCGACGTCGAATTCGCGGAATTAGCCTGTTCTGACCTCAAAGGGGAGACGTGAATCGAGCCACCAGCACCTTGCTGTCCTTCTCTGCCGCGCTGATCAGTATCGGGGTGACCGTCGCTCCGGCCAGTGCAGCCGATTCCTCGCGTATCGGTCCCGTGCATGTGTCCAGGGGCAGCGGCGAGGAGATCATCCTGTTCGACAAAGGTTCTGAGTTCAGGTCGGAATCCGGATCAGCCAGCGGTGAAGTCGGCTTCCGCGGTGGATCGTTCACATGGGTCGCCGATTTTCAGATCGGGTTCGAGTCCCGCCACTACACCGCAGTCGACGCAGGCACCCACCGGATTCAGATCAACG # Questionable array : NO Score: 5.66 # Score Detail : 1:0, 2:3, 3:0, 4:0.80, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGTCCCCGCGCACGCGGGGATGTTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGGTCCCCGCGCACGCGGGGATGTTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-9.70,-9.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [40.0-38.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,4.91 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //