Array 1 26396-25328 **** Predicted by CRISPRDetect 2.4 *** >NZ_BIEN01000064.1 Escherichia coli strain 83-G22-A entry64, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 26395 29 100.0 32 ............................. ATTAACGCGGCCCGCCTCTGCGTTGGCGTGAA 26334 29 100.0 32 ............................. CGCGTTTCTGGAACCGTAATTTGCTGCGGTAT 26273 29 100.0 32 ............................. CGCCGAGCGTGGCGCGGATATAAAAAAGCCCC 26212 29 100.0 32 ............................. GAATATCGGGTGCCAGCCTGGACGCTGGCCGA 26151 29 100.0 32 ............................. ACGCGAATCGGCGGTTTTGAGCGGGTAGCAAA 26090 29 100.0 32 ............................. ACGCGAATCGGCGGTTTTGAGCGGGTAGCAAA 26029 29 100.0 32 ............................. CTCCGCTCTGTGTTCGATAAACTCATCCAGCA 25968 29 100.0 32 ............................. AATTAAAATCCCCGTTTCTGTTACATGGGCGA 25907 29 100.0 33 ............................. AATTTTCTTCATTGCTCAAACAGGCTGCATAAC 25845 29 100.0 32 ............................. TATGCCTCTTTTAAACGCGCCGCCTTTTTGCC 25784 29 100.0 32 ............................. ACGAAAATCGCCGCCGGTGTCCTCGCTGATCA 25723 29 100.0 32 ............................. GACTCAACCGCGCTTCCCGGCCTCACCACTGC 25662 29 100.0 32 ............................. GCGAAAAAATACGGCTGGATGCGACAAAAAAA 25601 29 100.0 33 ............................. GAGAAGAAGCTCCTGAGCTAACCGTTGAAGAGC 25539 29 100.0 32 ............................. CCAAAGAAGAACAACGAGCCAACTGGTTTCAG 25478 29 100.0 32 ............................. GCAATTTGTTGTCCGCGATCCGGTACGCGCGT 25417 29 100.0 32 ............................. CGGCTATGGAATTTATGGAGAAGTTTGGTTTT 25356 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 18 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTCCTTGCCGCAGGTGAAATTGAACCGCCACAACCTGCGCCGGATATGTTACCGCCAGCCATCCCCGAACCTGAAACGTTGGGCGATAGCGGTCATCGAGGACGCGGCTGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCGCCGCGCTTACGTGGACGGCTCGCAATCTGACTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAGCAAATTACCCAACTGGCAGGTTGTGGAAATGTGGTCATGGCCTGGGCGACAAATACTGAGTCTGGTTTTGAGTTTCAGACCTGGGGCAAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTAGACGTTCTTTAAAAATAAGGAAATGTTTGAATTTAGTTGGTAGATTGTTGATGTGGAATAAATTTGTTTAAAAACAGATATGTATGCTTAGT # Right flank : GGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAACGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [43.3-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 17085-19165 **** Predicted by CRISPRDetect 2.4 *** >NZ_BIEN01000036.1 Escherichia coli strain 83-G22-A entry36, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 17085 29 100.0 32 ............................. TTGCCCGGCGCACAGGTGCACATCCCGGAAAA 17146 29 100.0 32 ............................. CCTCAACTGGCGTTTGAGTTGTAGATGTCTGA 17207 29 100.0 32 ............................. CTGCCGACAAATCCCTGCTCGTTGGCTACTCG 17268 29 100.0 32 ............................. AATAGTGCCTAGGTTGTACCATTTTTGATGTT 17329 29 100.0 32 ............................. ATTCAGAAAATTTAAAAATGTGGGCGCGTGGC 17390 29 100.0 32 ............................. GAATACCGATTCATAACGGCGGAAATGTGGAT 17451 29 100.0 32 ............................. GTGTATGCGGGTGTGTGTGGCTGCCAGTGCCG 17512 29 100.0 32 ............................. GCTCATTTTCCGGTGAAGTGAAAGCGTCTACC 17573 29 100.0 32 ............................. GGGGCGAGGTGATCTTTCAATAACAATACAGC 17634 29 100.0 32 ............................. AGGTTCAGGAGAGTGCAATGCGTATCACAACT 17695 29 100.0 32 ............................. CCGATTCCGCTGGTCTTGCGAACTCCCCTGAA 17756 29 100.0 32 ............................. AAATCATGGATTGATGAAGATGGTTATGAAAT 17817 29 100.0 32 ............................. GCGTCATTTTTATATTCGTTATCTCCGGAGCA 17878 29 100.0 32 ............................. TGAGCAGATGCATATAGCGCCCGGGGTGTATG 17939 29 100.0 32 ............................. CTTTCGCGCATATGCTCGATCACATAACCGAA 18000 29 100.0 32 ............................. TGAGAAAGAATTATTCTCTGACATGGGGCCGC 18061 29 100.0 32 ............................. GCCAATGATCCCTACTCGTACCCCCAAACGGG 18122 29 100.0 32 ............................. GAGACGGAAATCGCGGTTGATAACGCTGATAT 18183 29 96.6 32 ............................T GGATCTGTGGGATTATCAACGAGGTCAAATAA 18244 29 100.0 32 ............................. TCTTCACCGGTTTTGATTTCAAGTTTTTTGAG 18305 29 100.0 32 ............................. CGTGCCGCTCTTGAGATCGGCGGAAAGTTTAT 18366 29 100.0 32 ............................. CGATCTTCAATTCTGCAAACGTCCAGGTAATA 18427 29 100.0 32 ............................. GCGCGGCCTGTCTTATTCCGTCTAATACCCCT 18488 29 100.0 32 ............................. CGTACGCGATGTGGATCAGTGCCGCGTTCTCT 18549 29 100.0 32 ............................. GCGAACTCGTAATTTATCAGGCTCGAATTCAG 18610 29 100.0 10 ............................. GCGCTCACGT Deletion [18649] 18649 29 79.3 32 T.AG.G..A.A.................. TCGCTGGCTACCCTGGGGGTATTCAGTGACTA 18710 29 96.6 32 ............................T TGAGATGCCGTTTGCCGTTTTTCTGTTTTTTC 18771 29 100.0 32 ............................. TTCTCAGGCTTTACCCACTCTTTTACAGTGTC 18832 29 96.6 32 ............................A GAAGTTCGGCATTGCCCGCAAAGATTTGTCAC 18893 29 100.0 32 ............................. GCGATCTCGCGGAATACACCGACGAGGCGGGC 18954 29 100.0 32 ............................. TAAGGCCGTCGCCGGATCAGCCTGGCTATGCC 19015 29 93.1 32 .A.C......................... TTCTTGCGGGTGTTGCAAATATTCTTCACGTA 19076 29 93.1 32 .A.C......................... GACGCCGCCGCCGCGAAGCCGTTTCCGATGTT 19137 29 93.1 0 .A..........................A | ========== ====== ====== ====== ============================= ================================ ================== 35 29 98.5 31 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGAATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTGTAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : CCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAGAG # Questionable array : NO Score: 6.14 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:-0.04, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 137886-137738 **** Predicted by CRISPRDetect 2.4 *** >NZ_BIEN01000073.1 Escherichia coli strain 83-G22-A entry73, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 137885 28 100.0 32 ............................ TCGACGGGGTGCGGTAAAACCTTTGCGAACGC 137825 28 100.0 32 ............................ TTCACAGGTAACATACTCCACCCGCCCACCAT 137765 28 78.6 0 ................A...A.A.A.TG | ========== ====== ====== ====== ============================ ================================ ================== 3 28 92.9 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : TAAATTCATCGTCGAGTTGCAGGTTCAGCTGGATCAGAAAGGTGTTTCTCTGGAAGTGAGCCAGGAAGCGCGTAACTGGCTGGCCGAGAAAGGTTACGACCGGGCAATGGGCGCACGTCCGATGGCGCGTGTCATCCAGGACAACCTGAAAAAACCGCTCGCCAACGAACTGCTGTTTGGTTCGCTGGTGGACGGCGGTCAGGTCACCGTCGCGCTGGATAAAGAGAAAAATGAGCTGACTTACGGATTCCAGAGTGCACAAAAGCACAAGGCGGAAGCAGCGCATTAATCTGATTGTCAGGTAGGTTGGTGAAGTCCGTAATCTCGTCAGGGGTTACGGACTTTTTATTTATGGGGTGGAACGGTGAAAACCCTATTTTTGGAGGTGAAGGTAAGTTGTTGATAATTAGTGCTGCTGGAAGGTAAGAATAAAAAAGGGTGCTGCAGGAGAATGGGATGGTTTTGCTTTATTAACAACGGGCTAAACGTGTAGTATTTGA # Right flank : CGAAAAAAAAGCTCGCACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAACCCCCGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCCTTCAGCCACTCGGACACCTCACCAAATTGTTTTGCTACCAAACCTCATGGGTGGCAACGGGGCGCTACTATAGGGAGTTGGAGTAAAACGGTCAAGAAGAATTTTAATGATAATTATTGTTTGCTCATACTGTAAACAAGTTGTGCAGTATATCTACATCGAGACAAGTTACGGACTTATACTTCCAAAGTACTTCATACATATCACAAAATAAAAAGGCCGGTTAAACCGACCTTTTACTCGTTCTTTCTCTTCGCCCATCAGGCGGTAAAACAATCAGCGACTACGGAAGACAATGCGGCCTTTGCTCAGGTCGTACGGGGTCAGTTCAACAGTCACTTTGTCGCCCGTCAGGATGCGGATGTAGTTTTTGCGCATTTTACCGGAGATGT # Questionable array : NO Score: 5.01 # Score Detail : 1:0, 2:3, 3:0, 4:0.65, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [4,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.91 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //