Array 1 49191-47107 **** Predicted by CRISPRDetect 2.4 *** >NZ_CZVS01000033.1 Candidatus Kryptonium thompsoni strain JGI-5, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ========================================= ================== 49190 30 100.0 36 .............................. AATTAAGAGATAAGGAAATAGAGGGTGAATTAGTGC 49124 30 100.0 36 .............................. AGTGATAAATGTGAGTTTCTGCAGACTTTTTGGGAA 49058 30 100.0 38 .............................. GTATTTGTAATTTATTCCGATTGAATTTAGCGAGACAT 48990 30 100.0 36 .............................. AAATTTGCCCGAATGGATGATTTTGAAGGTTTTATT 48924 30 100.0 36 .............................. TTCGTTCAAACACAACTTCTTTTGGAGTTGGAACAA 48858 30 100.0 36 .............................. ACGAGTTCTCAAATAAACAAGATAGCGCAAGCACGG 48792 30 100.0 35 .............................. AGCGATTAACTAAAGTTAATCGGGAAAATTATTGA 48727 30 100.0 36 .............................. TTACAAAAGCATCAGCATAGTCAGGCGAACGCCCCA 48661 30 100.0 35 .............................. CGTTTTGAATTTCAGCGAGTTCGCTTGCACTTATA 48596 30 100.0 37 .............................. TGATTTGGCTCTATTTTCATCACCATTAAACTTTTCA 48529 30 100.0 37 .............................. GATGAATTGACTTGGGAACATGTAAAATATATTGCAG 48462 30 100.0 36 .............................. TTTCTTTGGGATTTCTTTATATATTGAAGCTTCATA 48396 30 100.0 36 .............................. AGTTAAATTTTTAAAGCCCTTGATTGGGTCAAAGAA 48330 30 100.0 36 .............................. CTTTATAAAAGCGAAAATATAAGTTATCAAATTGGC 48264 30 100.0 36 .............................. GACGATTATTATAAGTTGATTGATTTATTTGACAAT 48198 30 100.0 36 .............................. TTGCTACATCAAACATAATTTCAACGCAAGCGTCGT 48132 30 100.0 35 .............................. AGAAGGATTTCTGGTAGAAATTTTCTCGGTAAGAA 48067 30 100.0 36 .............................. ACTGAAAAATTATATTGTTTAAGAGAGTATTATGTG 48001 30 100.0 36 .............................. ACTGAAAAATTATATTGTTTAAGAGAGTATTATGTG 47935 30 100.0 36 .............................. ACTGAAAAATTATATTGTTTAAGAGAGTATTATGTG 47869 30 100.0 36 .............................. ACTGAAAAATTATATTGTTTAAGAGAGTATTATGTG 47803 30 100.0 35 .............................. ATATTTGTCTGAAAATTTTACGCTATGACAATAGA 47738 30 100.0 36 .............................. TCCTTTAACTCCAGTTGTGGAAATTGCAATTGAATA 47672 30 100.0 36 .............................. TCTTTTGTCATTATAAATGCCCCTGTAGAAACTCCA 47606 30 100.0 36 .............................. TTTTTGATTTTGCATTTTCATTCTCTTTTTTGATTT 47540 30 100.0 36 .............................. AAAATTTTGCTTGGCGAAACAGATGAGATTAACAGG 47474 30 100.0 41 .............................. ATTATCAGTTCAACACCTATTACCGAGGCTTATGAAGACAG 47403 30 100.0 37 .............................. AGCACGAAACTCAAATTGGTGCAACGGCTGAATTGGA 47336 30 100.0 38 .............................. GGTGCCTGTCCCTTTGCATAAGGGTTTGTCTTTAAAGT 47268 30 100.0 36 .............................. TCAGAACATATGTTTCATTATTTTCGGATTTCATTC 47202 30 100.0 36 .............................. AAATTTTCAGGATTGATAACTATAAAATTTGGAAGA 47136 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ========================================= ================== 32 30 100.0 36 GTGAGCATCGAACCAGTGTGGAATTTAAAC # Left flank : AAATTCCTTGATTTTAAATTTTTTCATAGTTTTTTGTGAAATTGTTTTAAATATTTTCGTTTCTAATATATAAATTTTTTAGTTTTTTCCAAAAGATAAAACTTAAAAATTTAAAAGTCAAGAGGGTAGGGTGGTAATTTGGGGTGGGGAGGATAGTGACTATGAGAGGGTGAAAGGGTTGAGGGCGGGAAGTTGTGGGCGCTTGATTTATTATATTTGTTTTGATAAATTTTTATGGTGAGTTGAAGATGTTAAGAAATGAGCACACGGTTTTGAGGAGTTTTAGTTGATGTGAGGATAGCAGTGAAGTAGAATAATTTAGTCGCGGACAGGATTTTGGGGGATTAAGTTTAGCGGTTAAATATTAATATTTGAAAGTTTGAAAAAAATTAATCAGTTTTCTCTTAGTCGCGGGCTGTATATTTTTGCATTTTGCTCCGCGACTTAATTTAGGTTGGAAAAATTTGATTTTCTGTGTAAAATTTTGTAGTTTTTGGAGA # Right flank : ATGGCAAAAATTACACTGTTTTTGCCGTGTTGGTCAGCCGTTTTGTGGGATAATGGAAATTTTTATCAATCAAAGAAATATACAATTCATGTTGTAGACAGAGTTGGGAGTGGTGATGCTTTTTGTGGCGGGTTAATTTATAGCTTTTTAAAAAATGCCAATGCCAAAGATGCCTTAGAGTTTGCAGTAGCAGCTTCATGTTTAGTTCACTCAATACCGGGAGATTTTGGTTTATTGTCAATTCAAGAAATAGAAGCATTAGCTACTGGTCCCGGAACAGGTCGAATTGTTAGATAATTCTCGGGCTAACAGCTACTTAAGGCTTATAAGTTTTGCGGTTCTGTCAAGTTCAGTGAGCTTCTCTTTGTCTCAGTTCTTTTTGGAGTGGTGGACAGGTTACTTGCTTTTCGTTTAAAAAATTTGTTATATTTAACTTAGCTATGAGTCTTCTCTCATGGCTTCCTCCTTTTAGTTTAACTATCGCCGGGGGAGCAAAACCC # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGAGCATCGAACCAGTGTGGAATTTAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.20,-0.60] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [60.0-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.27 Confidence: MEDIUM] # Array family : NA // Array 1 10383-8100 **** Predicted by CRISPRDetect 2.4 *** >NZ_CZVS01000050.1 Candidatus Kryptonium thompsoni strain JGI-5, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 10382 30 100.0 36 .............................. TAAATAATCAACTTCCCCACCAAAGACACAAAGAAC 10316 30 100.0 36 .............................. GCTCTCTCAAAATCTTGTTTAAATCTTCTCGTTCTT 10250 30 100.0 36 .............................. AATATGGTTATGTTACGGGTCCAACTTTATTTATTG 10184 30 100.0 37 .............................. ATATTCCCGGTTTGCCCACTTTAACCTCTCAAGGTCC 10117 30 100.0 37 .............................. TTCTTTTAAATAATGCCTCATTTCCCCCAAATTGCGA 10050 30 100.0 36 .............................. TATAATACCCCCACCACCACTCTCCATCAAACTTCC 9984 30 100.0 37 .............................. TCAAGTCCTTCAGATTCAAGATATAATGTGGAATTGT 9917 30 100.0 35 .............................. ATGTTTTTAAAAATCCTTCCGCTTTCGCTTTAAAT 9852 30 100.0 36 .............................. GTATGAATTTTTTCGGTAAGAATTTTCTCAGTAGAA 9786 30 100.0 36 .............................. CTTTTCATTTTGCATTTTCATTCTCCTTTTGATTTA 9720 30 100.0 36 .............................. AGTGGGGTCAATCAAAAGCCAAACATCTTCCTCATT 9654 30 100.0 36 .............................. CCATTTCAACCATCAGCATAATTCTTTCTGCAATCT 9588 30 100.0 36 .............................. TGGAAATAGGTTTTCTGAAACCCCTATTCCGAATAT 9522 30 100.0 36 .............................. TTTTTTTGATTTTTTTAAAAAATCGCAAAAACAACG 9456 30 100.0 36 .............................. ATGCTTTGGAATAAAAAATGCCCACTATCTTTACCG 9390 30 100.0 36 .............................. CAAATTTGGGTTTTAATCGCTCTTTCAAAAATTCTT 9324 30 100.0 36 .............................. AAGTTTTCAATTACAATTTTTCGGTTGCTCTCAAGT 9258 30 100.0 36 .............................. AAACAATTATCGCAAGTATAAGTTTTCTATATCCTT 9192 30 100.0 36 .............................. TTTTTGATTTTGCATTTTCATTCTCTTTTTTGATTT 9126 30 100.0 36 .............................. TCCTTATCACTTATGTAAGCAAGATAATCACATTTA 9060 30 100.0 36 .............................. ATATAGGCTTTGGGATAAGTTGTTTTTAAATAATTT 8994 30 100.0 37 .............................. CGTTTTTCTTTCCTTATCCAATCCGCTTCATTTTTGA 8927 30 100.0 36 .............................. ATTGTCCAATTTGCAGTAAGAGAGAAAAATTCCATA 8861 30 100.0 36 .............................. AAGTTTCAGCGTCGAAATACCCTGCAAGCGCGATTC 8795 30 100.0 36 .............................. ACCCTCTGGACAAGCGACATTCTGCAGGCATTTTGC 8729 30 100.0 36 .............................. ATTATTTTGTAGAGTATAGGTCTATTAGTTTTTCCT 8663 30 100.0 36 .............................. TTCTTCTTTTGTCTTAGTATAACTGGTTGGATCAGT 8597 30 100.0 36 .............................. AAGGTAGATATAAGCAAGATGTATTTTTTAGTTGCT 8531 30 100.0 37 .............................. ACTTATCAAATAAATAATAATTCTCACCATCAAAATA 8464 30 100.0 37 .............................. TTATAAAATAAAATTGAATTTTCCCCTGTTTGAATAA 8397 30 100.0 37 .............................. GAAATAAAAAAGATTCCCTTCGTATTCATACACTTTG 8330 30 100.0 37 .............................. TCTCATTTCGCAGGATCACATACAAAGGGTCAAAAAT 8263 30 100.0 36 .............................. GTTCATGAATATCGCGATCGTATCGATTGCGCTTTC 8197 30 100.0 36 .............................. TAGTTCAGAAACGCCATTTCCTCAACCAGCGTGTCA 8131 30 96.7 0 .............................T | TT [8103] ========== ====== ====== ====== ============================== ===================================== ================== 35 30 99.9 36 GTGAGCATCGAACCAGTGTGGAATTTAAAC # Left flank : CATATAATGGGAGAGGAAAAATATGAAGGATTTAAAATTTGGTGGTAGGGGGGCTAGAAATGTATTACATAGTTGTTTATGACATAGCGGAAAAGAGGGTGAACAAAGTTTTAAAATTTATGCGAAAGTATTTGAATTGGGTTGCAAAATTCGGTATTTGAAGGAGAATTAAGCGATGGACAATTTGAGGAAATGAAAGTAAAATTGAGAAAAATAATAAACTTGAATGAGGATTCGGTTTTAATTTATTCAATGGAGAAAAAATGGGTTGATAGGGAAGTTATAGGTGTGGAAAGAAGTGAGGTAAGTAGAATAATTTAGTCGCGGACAGAGTTTTGGGGCGTTAAATTTAGCGGTTAAATACTTAATATTTGAAAGTTTGAAAAAAATTAATCAGTTTTCTCTTAGTCGCGGACCGTATATTTTTGCATTTTGCTCCGCGACTTAATTTAGGTTGGAAAAATTTGATTTTCTGTGTAAAATTTTGTAGTTTTTGGAGA # Right flank : CACTTTATCAGAAGGGAAGTATTTTTATGATCAAGACCAAGCGTGTTTATGAGGCCCCTGAACCTGATGACGGTAAGCGTTTCCTGGTGGAGAGATTATGGCCCAGGGGTGTGAAGAAAGAAACTTTGCAAATTGACGCATGGTTGAAAGGAGTAGCTCCAAGCCACAGCTTGCGACTTTGGTATGGGCATGACCCAAAGAAATGGGAAGAATTTAAACGACGCTACTTTGCTGAGTTAGATGGCAAACCCGAGGCATGGCAACCCATCTTAACAGAGGCCCGCAAAGGAAATGTAACCCTTCTGTATAGTGCACGCGATACGGAACATAATAGTGCGGTAGCATTAAAGATTTACTTGGAGAATAAAAAATGATGGGATAACTTCGAAAAAGTTTTCAGAAACCTGCTATTGACTCTAAGCCCAATTTTCGTTAAATTTAAGATAAACATAGCGGAAAATAGTTAAGAAATTTAAACTAAAATTGAGGTTCCACTATGG # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGAGCATCGAACCAGTGTGGAATTTAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.20,-0.60] Score: 0/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [58.3-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.68 Confidence: HIGH] # Array family : NA // Array 1 54-5278 **** Predicted by CRISPRDetect 2.4 *** >NZ_CZVS01000049.1 Candidatus Kryptonium thompsoni strain JGI-5, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 54 30 100.0 36 .............................. CTACAAATATAACAAATTTTATCTTGCTTGTCAAGA 120 30 100.0 36 .............................. AAAATTAAATCTCTGCTTACCAAAAATAAACCAAAT 186 30 100.0 35 .............................. TTTGGTTAATCGGAAAGAGCAAGAAAGGAGAATTT 251 30 100.0 37 .............................. TTCAGCAATCTCTTTCATCTCATCCGTCACTCTTTTA 318 30 100.0 35 .............................. CTGAATTTCAATCATCTGATCGGTTAATTGCCTTA 383 30 100.0 36 .............................. GGAGGCAAGCGATTATACTTTTAAAGCTGATGTAAT 449 30 100.0 36 .............................. TTTAAATCTTCCTGAAACTTTAGCGCCTGAACCTTG 515 30 100.0 36 .............................. TATAAATTAACCCCAATTTTCTCAAGTTCAAGCTTT 581 30 100.0 36 .............................. TTATGCATAACACGTTCTCCACAATCACAGTGACCC 647 30 100.0 37 .............................. GAACCTTTTAAAAACAATAAGTCACCGAGACGATTAT 714 30 100.0 37 .............................. AATTCTTTTGGAACAAAATAAAAAAGTGTATTGTGCA 781 30 100.0 37 .............................. ACGCAATTTGTCAAGAGGCAAAAATAAAAGTGTGATT 848 30 100.0 36 .............................. TCCTGAAACTTTAGCGCCTGAACCTTCGCCTCATCT 914 30 100.0 37 .............................. AAGATTTGCTTGATGATTTAACTTATCAACTATTGGA 981 30 100.0 37 .............................. GAGATAGCGCCCCTGTGAATCTTTGAGTTTTCTTAAC 1048 30 100.0 37 .............................. GAAAGTTGAGCGACAAGTTTTATAATTCTGGATATAA 1115 30 100.0 34 .............................. TAATATATCGTTCCACTTGCAATCCTTACGCCCG 1179 30 100.0 38 .............................. TGAACTCTTCTTTCCCCATTTCATCAGCCCGTAGCTTC 1247 30 100.0 37 .............................. ATAAGAGCATACCATATATTCTTATCGCTCAAATTCA 1314 30 100.0 36 .............................. TATTTAACATACGCTAATGCAAATGACAACATCCGA 1380 30 100.0 38 .............................. TATGTATATCCGCAATTCCAACACCCATGCAATTCCCT 1448 30 100.0 35 .............................. ATTTTTAGTTTTCAAAATACTTTTTATCCTTTAAA 1513 30 100.0 37 .............................. AATGAGACATTAATTTATAAAAGAACTCGTAGCGCGT 1580 30 100.0 35 .............................. TTTTAATTCCCTTCTGCGACCATAAATACCCCTTT 1645 30 100.0 37 .............................. CATACAATTTTAAAATCAAGAAAATTAAAAATCAAGT 1712 30 100.0 36 .............................. ATCACTTTTGAATTTGTAAATTTTACACACAATTAT 1778 30 100.0 37 .............................. CCATTAAAGATATAATAATGTGCGTTGGGGCTTCCAT 1845 30 100.0 35 .............................. GAAGAAGATTTAGAAAAGGTTGTGACCGTTAGGAC 1910 30 100.0 37 .............................. CAAGGTCCATTTTAACCCCCATTACTTTTTTTGTTTT 1977 30 100.0 38 .............................. TTAATATTAATAATTTCAACCAAAACATGCGCGTAATT 2045 30 100.0 36 .............................. TCGTTAAAAGGGAGTTTATATCCGTCAACACGCCAC 2111 30 100.0 35 .............................. TCCCTATTCGAATAACTCGTCCGGGGCGCGCAAAA 2176 30 100.0 37 .............................. AAAAACAGGAGTGTGATTTATATCACACTGTTTTTAA 2243 30 100.0 37 .............................. TTCTTTTAATTGCCTCGGTAATGCTTATTGTTTTAAT 2310 30 100.0 37 .............................. ATTTTAAGTTCGCACACTCACGATTCAATTTATTATC 2377 30 100.0 37 .............................. TTATGCATAACACGTTCTCCACAATCACAGTGACCCA 2444 30 100.0 37 .............................. TTAAAAGGTGGTTTATATCCGTCAATATACCACCTGT 2511 30 100.0 35 .............................. ATTCTCTCCCCAAACAAATTGTGGGGGTTTACAAC 2576 30 100.0 37 .............................. ATAAATTTTATCAATTCCAACCCATTTATCCCGTTCA 2643 30 100.0 37 .............................. AGAGATGAATTAAATTTTATGGTTATTTCCGTTATTT 2710 30 100.0 38 .............................. GCAATTAATGATAGATATGTTTCATTTAGCTGGACTTG 2778 30 100.0 36 .............................. ACAACTATATAACTTGAACAAACAAGTTTATTATTT 2844 30 100.0 37 .............................. ATAAGAGCATACCATATATTCTTATCGCTCAAATTCA 2911 30 100.0 36 .............................. TATTTAACATACGCTAATGCAAATGACAACATCCGA 2977 30 100.0 38 .............................. TATGTATATCCGCAATTCCAACACCCATGCAATTCCCT 3045 30 100.0 35 .............................. ATTTTTAGTTTTCAAAATACTTTTTATCCTTTAAA 3110 30 100.0 38 .............................. TTCGATATTGTCAACTCTATCAGACAAATTTTTTATCA 3178 30 100.0 37 .............................. GCACCAATACCCATCCTTTCTCTTTCGGCGGCTTCAC 3245 30 100.0 37 .............................. TTTTGTAATTCCGTATAACTCATATCCTTTCTCTATT 3312 30 100.0 38 .............................. ATGTTTGAATTTATGCAATTTTATTTATGATTTGGAAA 3380 30 100.0 37 .............................. TTGAAAGGGGTTCTATAATTGCGATTAAATTGTAAAA 3447 30 100.0 37 .............................. ATGAGAACAAGCACTGGAAATTCCTTAACATAAATCT 3514 30 100.0 36 .............................. TCATTTTTTCCTCCATTGTTTTGTTTTTGAATTTAA 3580 30 100.0 36 .............................. AAGAGAGACAAAGAAGGGGACTGACGGGATCCCAGA 3646 30 100.0 38 .............................. AGCATAAACGAGCGCCTTGATCCACTCCTCGCCCCTGA 3714 30 100.0 36 .............................. AATATGAACAGCCAAAACAACATGCGGAGGTGAAGG 3780 30 100.0 37 .............................. ATAAGAGCATACCATATATTCTTATCGCTCAAATTCA 3847 30 100.0 38 .............................. GGTGAAATACCGCCTGAAGCTTCACGACAACAGGCTCG 3915 30 100.0 36 .............................. TAAAATTCTCTTCGCTTCATTTTCGCTTATTTCTAC 3981 30 100.0 38 .............................. ATTTTTCCCCGGTTGCTATGAACCGGGTTGATTTTTTA 4049 30 96.7 38 ........T..................... TTGTTTTAACCACCGTTTTATTTTAAACAAATCCTTAT 4117 30 100.0 35 .............................. TGGGACAACAGGATCGGCGTCAAGCTGACGAATTC 4182 30 100.0 37 .............................. GTTGGTTTGCGATTCTGACGGAAGCGAAATCGATAGT 4249 30 100.0 37 .............................. ACTACAGCCTTGTGCCGGGAGACATTGTCGAAATCGA 4316 30 100.0 34 .............................. TAGATTTTCTTATATTTTACTGCTCCACCAATTA 4380 30 100.0 38 .............................. TAAATTCGCAATTATATGCAACACCATTGGAAATAAAT 4448 30 100.0 37 .............................. CAAATAAATAATCATTCTTCTTCACAACATTGTTAAA 4515 30 100.0 35 .............................. ACCCTCAAGAGCCAGTTCTTTTGTCATTTTAACCA 4580 30 100.0 36 .............................. TATATCTTGCCAAAGCGGTATCTATATTACTTTCAT 4646 30 100.0 37 .............................. AATATTCTACACTGCCACATTTTTCACACCTAACTTC 4713 30 100.0 35 .............................. TTCGTAGCTAACTCTTATCTTGATTCTGTTATTCA 4778 30 100.0 37 .............................. ACACATTATTCCGCCGACGCCGAACGCAAATGTTTGG 4845 30 100.0 37 .............................. CCCTTGATAGGGAAAAATTGGACTGCGTCATTTAATC 4912 30 100.0 38 .............................. ATTTTTCCCCGGTTGCTATGAACCGGGTTGATTTTTTA 4980 30 96.7 38 ........T..................... TTGTTTTAACCACCGTTTTATTTTAAACAAATCCTTAT 5048 30 100.0 36 .............................. GTTTTTAGAAAGGTTTTGGGTTAGCATTATTATGTC 5114 30 100.0 37 .............................. ATTAAGTATTTCAATTGCTTCAGTCTTACATTAACAA 5181 30 100.0 37 .............................. CTATGATATACAAAAACAACAACTTTACTCTCATTTT 5248 30 86.7 0 ........T..................TTA | A [5273] ========== ====== ====== ====== ============================== ====================================== ================== 79 30 99.7 37 GTTTGAATCGAACCTGTGAGGGATTGAAAC # Left flank : CCTGTGAGGGATTGAAACTCTCTTGACAAATTGCGTTGAAGTTATTATATTTAG # Right flank : AGGGTAATTTGTGAATTGAATTGGTGAGGGGGGGTTAAAGCATATAGTTTGTGGAAAGCTTTTAATGTTATGGTGAGTAAAAGGGTAAAAAGGTCAGAAAAATTTTTGATAATGTGCATGTAAAGTCAGTTTAAGAAATTTTGTAAGCCGGGTAATTTCAGAGAGTGTAGCTCTTGACTTTTATTTAATTTATTGATATAATTAGCACAGAGAGGAGCCTCCAAAATACTAAGGTGGATTTAAAATGGAATTAAAGTTAAAGTGCAAAACCATAACACCAATGTTTATGGCGGGGGCTGATGGTAAAACTCCTGAGTTAAGGTCTTCAGAGTTTAAGGGGATGATGAGGTGGTGGTGGAGGGCAATAAAGGCGGATGATGATATTGGAAAGTTGAGAAAAGAGGAAGCGGAAATTTTTGGAGGGACTGGGGAAGGAGAGGGCAAAAGCAAGGTGAGGGTGATAGTAAAGCCAGGCTCAATTGACATAGGCAATGATGTTC # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGAATCGAACCTGTGAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.80,-0.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : NA // Array 2 14474-15230 **** Predicted by CRISPRDetect 2.4 *** >NZ_CZVS01000049.1 Candidatus Kryptonium thompsoni strain JGI-5, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================= ================== 14474 29 100.0 38 ............................. GATTTAGACAGCTTTCAACAAGATTATTTTCATTTGCG 14541 29 100.0 37 ............................. CGGCTAATCGGGGATACATAGAAATACCAATACTCCG 14607 29 100.0 37 ............................. CTAGGTTAAGCGATAATTAATTTGAATCGTTGAAAAT 14673 29 100.0 36 ............................. CTGTGGTCGCAACTTAAATATCGCATTGGCAAACAA 14738 29 100.0 36 ............................. TTTGATTTAAACAGGGATAATGACACTGGCATTCTA 14803 29 100.0 37 ............................. TGGGAAATTTCGGTTAAAGCAAGATGGAATGGGCTGG 14869 29 100.0 37 ............................. GATACGACAACATCTTCAAGGTTGCGAGCGAGCTTCT 14935 29 100.0 38 ............................. AGTATTTCAATTCGTTCCTCCTTGCTTAAAGTAACACG 15002 29 100.0 39 ............................. TTCATTTTAGCCTCCATGATTTTTTTGTTTTTTTATTTG 15070 29 100.0 38 ............................. ATAATAAAGAAATCTGACAGTATCCATAGCAAAACTCG 15137 29 100.0 36 ............................. ATCTCTTCAACGCTCAATATTTTACCCTCTGGCGGG 15202 29 93.1 0 ........................A...T | ========== ====== ====== ====== ============================= ======================================= ================== 12 29 99.4 37 TTTGAATTGAACCTGTGAGGGATTGAAAC # Left flank : CTGATTATTATTCTGGGAAGCAACCTCCGGCGGATTGGCAGAATCCAAATCCTATAAAATTTTTGACTGTTGAGAAGACGCATTTTCAATTTTATTTGATTTCGCAGGATAGTTCTTTACTTCAGAAGTCGGAGGTGTTATTAAAGGAGGCGTTAGGGAAGTTTGGGATTGGGGCGAAGACATCTTTGGGGTATGGGATATTTGAGATTTAGGGGGAGATGCGTTAGGTGTTCAATTTTGTTTTGTGGGTTGAGGGGTTGTTTTATATTCGTTATTTCGTTTCCGAGAATCGCGTGAAGAAGTTAGCACATTGATTTTTGAATAATTTATTGATTTACAATCAAAAAGTCGCACTCTGACATAAACTAAGACATTTTGTCAGGGAGGTTGGCGGAAAAATTTGGGGTATGGGTTAACATTTAGGCTCTTGACTTTTGGTGGAAAATTTATTATATTATAGTGTCTGAATCTTGGTAGGTTTAAGTTTTATTTTATGGTGG # Right flank : GAAATTCTTGCTGTAAAATTATTTCAAAAAACACAAAATTCATTGCCTAAAAACTTATTTCACAGCAACTGTAAATGTTTTGCGTTAAGTTAAAATCATAGGAGAGGGGTTAAAATGTTAAGGAATTTATTTTTAGTTTTAATTTTTAATTCTTTAATTTTTTGTGAAAAGTTATTTTCACAACTATCGTT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:0, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TTTGAATTGAACCTGTGAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.07%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.80,-0.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-78.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : NA //