Array 1 215044-212512 **** Predicted by CRISPRDetect 2.4 *** >NZ_LWIK01000006.1 Salmonella enterica subsp. enterica serovar Tennessee strain MOD1_SALC_77 contig0007, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 215043 29 100.0 32 ............................. GAATTCGTTATTTTTAAACGAAATCATTATCA 214982 29 100.0 32 ............................. AATGCAACTGCAGTATCCTTACGCCCAAAAGC 214921 29 100.0 32 ............................. GCAGCTATCGATGAGATGAATAACGCGATTTA 214860 29 100.0 32 ............................. TACACACCTAGCAATTAATTACGATTTTGTTT 214799 29 100.0 32 ............................. GAGGGTCGGTGCGCGGTATTAAAACACGCTAT 214738 29 100.0 32 ............................. TACACCAAATGGGGGCCAGCAAAGAAAATGCT 214677 29 100.0 32 ............................. TCGTTTATAGCTGAGAACAAGCTGGCGCTGAT 214616 29 100.0 32 ............................. CGCTGGCGCAACGAGTCGTACCTGTACGCCAG 214555 29 100.0 32 ............................. ATTCGACGCTCAGGCCGTTCTCTTTTAACCGG 214494 29 100.0 32 ............................. CCAAAAACATTGAGTGCTTCTTGTACGTTCAT 214433 29 100.0 32 ............................. CAGTTTGAAGAGCGCGCCCGACAGGAATATGA 214372 29 100.0 32 ............................. TTACAGACCGCTCATTTGTTATAAATATGTTG 214311 29 100.0 32 ............................. CCTGGAATGGTTTAACGGTGCAATCCAGGATA 214250 29 100.0 32 ............................. CTGGCTAATCTGCGTGTTGATGTTGTCCATGC 214189 29 100.0 32 ............................. GTCCCTACAACCGGGACCGCCCGCCCGACCAG 214128 29 100.0 32 ............................. CCGAACGCTCAACGGGGAGTGATCGAGAATCT 214067 29 100.0 32 ............................. CGATCAGGAAATCAAGGAGAAGCGGGTGCGTA 214006 29 100.0 32 ............................. ATGGAGCGCGGTGGTTACATCGGCGTTCCGGA 213945 29 100.0 32 ............................. GTCGGGATCTCGACCTTTTCAATTTCTTCTAT 213884 29 100.0 32 ............................. TTTGCGACATTTATATTAATGATTATAAATAT 213823 29 100.0 32 ............................. ACTTGCTTCATTGACATGCCTGCCACTGCTCC 213762 29 100.0 32 ............................. GCGCGCCATTGCTGAGGGTAAACCGGCGATTA 213701 29 100.0 32 ............................. CCAGCTCAATTTCGCCAACCTTCGCGCTAATG 213640 29 100.0 32 ............................. TCCGTCTCCGCCAACGCCTTTAGCCCATCCAG 213579 29 100.0 32 ............................. CTCTTTGATCTCTCCGTTTGCCGTTGAGTGGT 213518 29 100.0 32 ............................. TTGACCGGACTCGCGGTTATTCAACTAACCGT 213457 29 100.0 32 ............................. TAGAATAATTGTGTTTTTGCTACCAATGGTTG 213396 29 100.0 32 ............................. AATCTTCAGAGGACTCAGATCCTGATTACGTT 213335 29 100.0 32 ............................. CAGGCATAACTACACCTGTCAGGAGCCAATTA 213274 29 100.0 32 ............................. TGGTTACGTATACGCCAGATTCAGAAAAGGCC 213213 29 100.0 32 ............................. ATTCAAAAATTCAATATGAGGTTGGAAATTTT 213152 29 100.0 32 ............................. GTTGTGTGGGTACAGCCGGCCAGCGTCAGCAG 213091 29 100.0 32 ............................. TACGAATAAACAGATTTTTGCGATATCTCTGC 213030 29 100.0 32 ............................. CAAATGAAAAATGGTTTAAAGGAGGTCTGTAA 212969 29 100.0 32 ............................. TTTACCTGGTTCGTCTGGTTCAACTATATCGA 212908 29 100.0 32 ............................. ATCGAATGCTTTTGTGTGTTCTGCTGCCACTT 212847 29 100.0 32 ............................. GGGGCGTCACCATTTTTGAATTTATCAGCCGC 212786 29 100.0 32 ............................. ACCAGGCTACCCGCGCGGTAGTTCGTCGACAG 212725 29 100.0 32 ............................. AGCAATGATTGAAAAGCTGGCGATAAACAAGG 212664 29 100.0 33 ............................. ATAAATCTAATTTATTTGATTAGTAGTGCTAAA 212602 29 100.0 32 ............................. TCGCACAACGCCTGGATATCCGCCCATCGGCC 212541 29 96.6 0 ............T................ | A [212514] ========== ====== ====== ====== ============================= ================================= ================== 42 29 99.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGCACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGCCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCGCAAAGATCCGCGAGATGATATGGCAACAGGTTTCCGTTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAGGTTTTGAGTTTCAGACTTTTGGTGTAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAAGTTAGAGATCTTTAAAAATTAGGAAAAGTTGGTGGGTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGATTTAGA # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 232488-231667 **** Predicted by CRISPRDetect 2.4 *** >NZ_LWIK01000006.1 Salmonella enterica subsp. enterica serovar Tennessee strain MOD1_SALC_77 contig0007, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 232487 29 89.7 32 ....C...........G........C... GTTTGCCGTATCTTCGATCATCCCGGACCGGT 232426 29 93.1 32 ....C....................C... CTACCAGGCCCGTTTGTCTCAACCATGACCAG 232365 29 100.0 32 ............................. CCACGACTAACCGGTACTAATCCTGAGTTCAT 232304 29 100.0 32 ............................. TATGAGTTTTCAACATCACCAACTAGTCATGT 232243 29 100.0 32 ............................. GCCAAACAGGTTGAGATAGGGCTTCATTATGA 232182 29 100.0 32 ............................. ATGGAACAGGCCCAGGCTGCGCAGCAGCAACA 232121 29 100.0 32 ............................. TCAATAAAATCAATGATAAGCAGTGTCGTTAA 232060 29 100.0 32 ............................. AGAATCGCCAGCGGAAAGAGAAGGGGTTAGCG 231999 29 100.0 32 ............................. CGGGAGCACGGGTGTTGCAGCATTGCAGGAAG 231938 29 100.0 32 ............................. TGCGGCGCGGTAGTTGGCCTACATGATAGCCA 231877 29 100.0 32 ............................. GATGATCGTTTTTTTCGTTACGTCGCGCAAAT 231816 29 100.0 32 ............................. CACCTCAGATGTTTGGGGTGCAATTTGTAATG 231755 29 100.0 32 ............................. AGCGGCTAAACCTGCCGGTTATCGCTGAGCAG 231694 28 89.7 0 ............T...........G-... | ========== ====== ====== ====== ============================= ================================ ================== 14 29 98.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TTCTTTCAAACGTTACTTCTGCTCGCGCCGTGTTCCCCGCGCCAGCGGGGATAAACCGTTGTTGCAGGCGGGAGAACGCAGCGCGTACCCGTGTTCCCCGCGCCAGCGGGGATAAACCGCCTGCCGTCGCCGTCGCCATATCCGGCGCTGTGTGTTCCCCGCGCCAGCGGGGATAAACCGCCTGCCGTCGCCGTCGCCATATCCGGCGCTGTGTGTTCCCCGCGCCAGCGGGGATAAACCGGGCCACTTATCAGCAAACCGGGCATCCAGAACGTGTTCCCCGCGCCAGCGGGGATAAACCGCGAGTCAACAGCGGTAGCCATTGCAGGCATTTGTGTTCCCCGCGCCAGCGGGGATAAACCGGTTTGCCGTATCTTCGATCATACCGGAACGGTGTGTTCCCCGCGCCAGCGGGGATAAACCGCTACCAGGCCCGTTTGTCTCAACCATGACCAGGTGTTCCCCGCGCCAGCGGGGATAAACCGNNATTGCGGGCATTT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTTCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGGGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [3-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [63.3-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.68,5.24 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //