Array 1 13881-12452 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACSPP010000071.1 Phocaeicola sp. Sa1CVN1 NODE_71_length_17863_cov_19.074441, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================================== ============================== ================== 13880 47 91.5 29 .............C.T.....G.............G........... TTTCAAGAACAGGAAATTTGATGAATAAG T [13870] 13803 47 100.0 30 ............................................... AGAAGCGGCAGAACACTATTACCCCGGCTT 13726 47 100.0 30 ............................................... CAAGAGAACAGACACCCACCGTTTCATTAC 13649 47 100.0 29 ............................................... AAAATAAAGTATGATGTTATTCAAAGATA 13573 47 100.0 30 ............................................... CCCACGGTGAACAGTATCGACGCTGCAACG 13496 47 100.0 30 ............................................... ATAGTTTTTTACTACCTTTGCACACTCATT 13419 47 100.0 30 ............................................... CACCGTTGGAATCCAAACACTCGTCACTTG 13342 47 100.0 29 ............................................... GTTTTTTCGTTCTTCGGGTAGCATGTTTT 13266 47 100.0 29 ............................................... AAAGCCTTAAAGACCTCTGCTCTGATTTG 13190 47 100.0 29 ............................................... TATCATTTCAACAGAATAGCGACCAGCCC 13114 47 100.0 30 ............................................... ATTAACTTGCTCTGGATCGATTGATCCCCC 13037 47 100.0 30 ............................................... TAGAACATCGTAAGGTTAACCAAATCCATA 12960 47 100.0 30 ............................................... GGGAGCATCGTTTTTGGCGATATGCCCAAC 12883 47 100.0 30 ............................................... CCTATGCCGAAGCATGGGCTAACGGAGAAG 12806 47 100.0 30 ............................................... CTCCGTTCCTTTAATCTGCTAAAGCGCATC 12729 47 100.0 30 ............................................... ATGGCTACTCCCATTTTGTTTATCAATACA 12652 47 100.0 30 ............................................... TCAGTTATGTGTAATGAGTTCATCAGACTT 12575 47 100.0 30 ............................................... TCCTAACCGTTTTTTACGTTTGCGCTGCGC 12498 47 100.0 0 ............................................... | ========== ====== ====== ====== =============================================== ============================== ================== 19 47 99.6 30 GTTGTGATTTGCTTTCAAATTAGTATCTTTGAACCATTGAAAACAAC # Left flank : GGCAGACGTCCGCTTGGCGAAGCTGATAGAAAAAGCCGTCTTGCATAAGGATGAGCACTTCGGCAACGGCCGTTGGGTACACAATCTGGTAGAGCACGGCATTTTGAAGTGCATGGCGAAACGGGTGATGGCGTTGCCGCTTTCCACCGAATCCTCCGAATTGTTCCGCCAGATAGAGGAAACGGATGTCGCCGGAGCCGAACCTGCCTTCCTTTATGAAAACGCCCCGAAGGTTGCATTGGCGAGGCGCATCGGCTTCACTGCTTGACTGGGGTACTTACCCCGATGCATATGGCTGTTTGAAACGTTCCATATAACTCTGTTTTCAGTCCTCCTTAATTAGGACTGCTGTGTTGAGGAGTAGAAACTGCAGTCCTATTGGTAGTAGGACTGCAGTCCTGGCATATTAGGATTATGCGAGGACTGGTATGGCAAATACTATCAGTGTAGCTTTGAATCCTTGGAAACAATAGTTTCGGCGCGCACTCGCGCACCTCCCT # Right flank : TGGATCTCTATTCTGCATTGATTTTCAATGATTTATATGAACGTTTAGAAAAAGAAAAAATTAGGTTTTCAATAAAGAATCCCGTCGTGTTTGGCGGGATTCTTTATTTTAAAAAAGTTCCAATTGCTGACCTGGTGTCTTTACACCTTGAGGCTTTTTCCCATAAAAAAGCTCTATTTGACCGAATTGTTTGTCTGTTATGCACATGATTCCCACCTGTCCGAACTCCGGAAGAAAAGATTTAACTCTTTTTATATGTACAGCTGCATTCTCGCTGCTGGCACAATGACGGACATATATGGAGAATTGAAACATCGTAAATCCATCACGTTGCAGGTTCTTACGGAAATCGGCGTAAGCCTTTTTGTCTTTCTTCGTCTCGGTAGGCAAATCGAAAAGAACCAATATCCACATAACCCGATATTCACTAAAACGGTCCATTTTAAAACTCTGGATAAATGATTCGACGGAGTTCGCCTGAAAAACATTTGTACAAAGAA # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGATTTGCTTTCAAATTAGTATCTTTGAACCATTGAAAACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.21%AT] # Reference repeat match prediction: R [matched GTTGTGATTTGCTTTCAAATTAGTATCTTTGAACCATTGGAAACAGC with 98% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.40,-2.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [75.0-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [1.05,9 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], // Array 1 20609-20329 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACSPP010000065.1 Phocaeicola sp. Sa1CVN1 NODE_65_length_22341_cov_24.782878, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ =================================== ================== 20608 28 100.0 35 ............................ AAGCTGACCAATCTGCAGACTTTGGATTGCATGGG 20545 28 96.4 35 .......T.................... AAGCTGACCAAACTGAAGTTTTTGGTGTGCAACGA 20482 28 96.4 35 .............G.............. GGGCTGACCAGTCTGAAGAATTTATTCTGCAGCGA 20419 28 100.0 35 ............................ GGGCTGACCAGTCTGACGGATTTGGAGTGCAACGG 20356 27 75.0 0 ..........T..-.GT.G.....C.G. | T [20348] ========== ====== ====== ====== ============================ =================================== ================== 5 28 93.6 35 TAATCAACTGACTACCCTTGATGTAACC # Left flank : ACCGCCAACCAAGAAAGCGACGCACTGGCAGGCGGGCTGACCTATACCATCGCCGATGGTACGCTGACCGCCACGGGAAGCGCTTCCCGGTCGGTAACGCTGACGGGAACCTTCACGAAAGGCGAGGAGTACTACTTCGTCGTGGCTCCCGGCACGCTGACGGGCGGCATTACCCTGAACTATATGGGTGAAGGCGGCAAGACATACGTCAAGACCACCACAAAACAGGTGACCTTCACCGCCGGAAAGATTACCTACCTGGGCGCACTGGATGCCAACAATTTCACCGAGGCCCTCAATGCGGCGTTTGCCAATGCCGTGAAAGAATTCAACCCAAATATCGGCTGGAGGGCGAACCCCGATGGCACCGTATCCCTGGATGAGGATAACAAATTCCAAATAATAATGAATGGGGGAATCTTGGATTTGCATAATAAAAACATTACCAGCCTTGCCGGCATTGAGTACTTCACCGATCTGGAGGTTTTGATTTGCGCCGG # Right flank : ACTTTGAAAGAGCTTCAAATTTTGTGGTGTCATGGCAACAAGATGACGGCTCTCAATATAACCCATAACGCATATTTGGGGGATTTGAAGTGCGGGAACCAGCAAGATAATCAGCAACTGACCCTGACATTGTGGGACACCAAGAAGGAGTTTTGGGACAGGATGTTAAACAGGTATTCAGATGAAAACAGCAATGTCACAACCAATGTTATAGAGACTCCTGTCAATGCCGATCACGACGGCTACGAAGATGACGGCGAAACGGTCGACTGGTAAGGGGCCGCTGACGCAACCCCCTGTCTTTCTGTTGTATTGTCCCGCACCCGATGCAACGGACCACGGAGGAGCATTCCGAACCCGAAGCGGAATCCCTCCCAAGCCTCTGCTGTAAGGGTATAGCACGGAAAAGGGCAATGCCCCGAAATACGAAAGGACATCAAACAGGAACTCCCGTTCCGGGCGGGAGCATTTGTGCCCGGCAACATCATACAGACACCGCA # Questionable array : NO Score: 2.66 # Score Detail : 1:0, 2:0, 3:0, 4:0.68, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TAATCAACTGACTACCCTTGATGTAACC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.71%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [8-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [61.7-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.41 Confidence: LOW] # Array family : NA //