Array 1 1992963-1993253 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP058562.1 Akkermansia muciniphila strain AK32 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ================================== ================== 1992963 31 100.0 34 ............................... ACTTTGGAAATCAACTACTTTCGGTTTGATAACC 1993028 31 100.0 34 ............................... CCTGAATGAGCAGGCTCAGGGCGACGCCGGACTT 1993093 31 100.0 34 ............................... TCCAACAACCCTATAACAATATAAACATCATAGA 1993158 31 100.0 34 ............................... CAACAAACCGATACGTCCCCCAAGTTGTTTCTTA 1993223 31 93.5 0 .............................GT | ========== ====== ====== ====== =============================== ================================== ================== 5 31 98.7 34 GTCGCACCCACACGGGTGCGTGAATTGAAAC # Left flank : ACTGCCCTGTAAGAGCGAGGCAAGCTTCTTCTATTGAGCCTTAAACAGGAGCCGTCCGTAAGGGCGGCTCCTGTTGCATGGCGGCGCAAGTGGAATGCAGGTCAGTTGACTGCCATTAGGGTGGCAGCAAGGCATGTATATAGATCCGGATATTCCTGTTTTCCGGTAGGTGAATTCCTGGTTTTGTGAAGGAATGAGGAAGATGTTTCTGGACGCAGTAAAAAAGAACGGTTAGCATCAATGAGCCAAATTGAGTGCAAGCTGGCTCGGACGTGAAGTAACTGAGGTTTTCTAAGATGATGCCACATCGGATGCTGCGCTTGCGCCAACCTCAAGCTCACAGAAAATTTCCGGGAATCCGGCGCATGCTGTAAGCGATTGAGAAATGTAGCTTGACAGAAAAATTCCCTTTGATCAGGCCTGACCGCATCTGGTTCTTGCATCAGGTTGGCGCAAGACCTTTGTTGCATGTTTGATACTCAAACCGTATTCGTCAGGCC # Right flank : TTTTTATGTATGTTTGACATATTTAAATACGAATCGTTGTTTTATTAAGGGAGGGAGATATATTGAAATAAGGGTATTTGTTGCTGAAGAATGAAAGATGGATTTTTGTGTTTTTTGTTGAATGCAATATTTTGACGGAGGAAGTTGGTTTTTGGCTGATAGAGGAGAAATGACGGGAAGTATTATTGGACGAATATGAAAAGATATTGTCTGGTTTCCGGGTTATGTTTGTGCCTGTTCATGGGGATATTTTCATGTATTCCGGAAGCTCCGGAGCATAAGACGGAAAAAGATGCCTCAGCCATTGTTCTGGATGAGGATTCGGATATAATCTGGAGGAATTTTTCTTTGGGCTGCGTTTCATTCGATGATAAGGCTCCGCATAGTAAAGGTTCCCGCATTTTTCACCGATTGATTCCAGATACGGAGGTTTATATCCGTCAGTTGTCCCGTATTGTTCTCCATACGTTGTATGAGAGTCCTGAAGAATGTATTGTTCC # Questionable array : NO Score: 9.00 # Score Detail : 1:0, 2:3, 3:3, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCCACACGGGTGCGTGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACCCTCACGGGTGCGTGGATTGAAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.78,0.64 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 2451956-2449615 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP058562.1 Akkermansia muciniphila strain AK32 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 2451955 36 100.0 30 .................................... GCATTTTCGAACAGACCCTGTTCGCCCCGG 2451889 36 100.0 30 .................................... GAACGTCAGCCCGGCGTATATGCTAAAACG 2451823 36 100.0 30 .................................... GATGACCCCCTCATGCGCAACCGGGAAGAG 2451757 36 100.0 29 .................................... CATTCCTCATCCACGGTGCGGGGGGCGTT 2451692 36 100.0 30 .................................... GGATTCCCTGCCTTTCCCCGCTGATGACTA 2451626 36 100.0 31 .................................... CCGTGACTTATGGGGCGGGGTTGCCCGCCGA 2451559 36 100.0 30 .................................... TATAGTAGGGAAGCGGTTCCTTTGGCTTCT 2451493 36 100.0 30 .................................... TCGCTAGCGGCTACAAAGATCCTCTTGCCA 2451427 36 100.0 30 .................................... GTTGCGGTTACTATTCCGCTTGACGAGGGC 2451361 36 100.0 29 .................................... ACAACGTGCTTGGCGTCCGCTTCATTGCT 2451296 36 100.0 30 .................................... GATATTCCCTATTACGTCTATGAAGACACC 2451230 36 100.0 30 .................................... GGTGAGAACGGAGACGTGTCCACCAATACT 2451164 36 100.0 29 .................................... TACCGGCCTCGCAAATCACTTCAAATCCC 2451099 36 100.0 30 .................................... GTGTCACCTATGGGGCGGGGTTGCCCGCCG 2451033 36 100.0 30 .................................... CACGCCAACGGATTCGAGAAGGAGTACGAA 2450967 36 100.0 30 .................................... GACGCTGTTGAAGCTCTCTATTGCGGAGAC 2450901 36 100.0 30 .................................... GCACGGCTATGTGATAAATAAATCCTGCAC 2450835 36 100.0 30 .................................... GAACACGCAAAGAGATTCCTCGCAAGTTGC 2450769 36 100.0 30 .................................... GGGAGAGTGAGGGGGACGCTGCGGATGGTG 2450703 36 100.0 30 .................................... CCGCACACCAAGGAAGTAGATACGAACGCC 2450637 36 100.0 30 .................................... TGTGGACAAGTGGGGGATGAACAAGGTCGC 2450571 36 100.0 30 .................................... CGAAGGGGTTGCGAGTATACTCGTTAGGAA 2450505 36 100.0 29 .................................... CCGCAGACCAAGATGATGAGGGACAGTTA 2450440 36 100.0 30 .................................... CCGCCTTTCTCCCTTCTGAGGGTCTTCCCG 2450374 36 100.0 30 .................................... CCATGCCTCTGCCCTTCTTGGCAACGTCTC 2450308 36 100.0 30 .................................... TCTCTTTGCACGTCTGCAACAGGCTCTGGC 2450242 36 100.0 30 .................................... TCCCGTCCTGACCTAAAGGTCAGTACGTCG 2450176 36 100.0 30 .................................... GACGAGGTTCTTGGCAACTTCTCCCATGAT 2450110 36 100.0 30 .................................... TACTCCCGCTTCACGGAAAATGAGCCTACA 2450044 36 100.0 29 .................................... CGGCGCGGGCTTACCCGCTGATAAGGCGG 2449979 36 100.0 29 .................................... AAAGCGGCGTAGTTATTCAGCGGTCTCTT 2449914 36 100.0 30 .................................... CCTTTAAACTTTCCGGTGATTCTGATTCCG 2449848 36 100.0 30 .................................... CAGGAGAATAAAACAATGAACAATCAAACC 2449782 36 100.0 30 .................................... TGAAAGCATCTAACCTGTATGGAAGATTTT 2449716 36 100.0 30 .................................... ACAAAGGGTGGTCTTATCGGACTGCCGCCC 2449650 36 91.7 0 .C...........................A.....T | ========== ====== ====== ====== ==================================== =============================== ================== 36 36 99.8 30 ATTGTACTGTGCCTTATTTTGGATTCAAGGCAAAAC # Left flank : TCTGTTATGCACCAGAACAAACAGATGCCGTTGAAAGCGGCGGTAGAGGCCGTTTGCCGCAGTTTCCGCAAAGCAGTTCTTGCCGGGCAATCCGGACCGTATGAACCATGGCATATGACAACTATAAAATGGGCTGGCTAGTTGTGTTCTTTGATCTTCCCACAACCACGCCGGAAGATAAAAAAAACTATCAGTATTTCCGTAAGGCTCTTTTAGAAGACGGCTATACGATGATTCAGTATAGCGTCTATGCCCGCGCGTGTGTTACTCAGGAAAGAATAGCTACCCACTCCCGCAGAATCCAGAAAATGATACCGCCTGATGGTTCTGTCCGCTGTCTTTTCGTTACGAATATCCAGTGGGATAAGATGTTCGTTTTTCATGGCAGGTCTTGTCCCCGACAGGAGGTTTCCCTTCCTCAGCAGATGCTCCTCTGGTAAAAATATCGGACGCCGTATTTTTTTATAAGTCGCTGAACATAAAAATAAGGCACAGTATCT # Right flank : AAATACGCCTCCGGTTTGATGACGCAAGGTGGATGTCCGTCTTTGGCCGCGCAATTCCAGACGGATTTTTGTCAGTCTTTCTTTAACGGAGCGGGAGGAATGAAGCTGTGCGTCCAGAACATGGCGCCGGTTGCGGAGGTGATACCCTCCATATTAAGATAGCGGGCCAGCAGCAGGGAGGGGGAGGAGTGCCCCATCTCCTTCTGAAGAAGGTTTTGATTGCAGAAATGGGCCAGGTGATAGGAGGCGTAGGTATGCCTCAGCACGTCCTGAACCCATCCGCTTTTCTTCAGGATGCCGGACCGGCGCCTTACTTCCTTCCATTTCTTTTCCCAGTTGGGCGGGCAGACGGAACGGGCGGGGGAACCGGCGGAAGACGTCCGGCTGAGGATGGCGCCCAGCACGGGAAGGATGGAAACGTGGCGGCTCCCGCCTGTTTTGGTATGGCAGGGCGCCAGTGAAACCAGGCCGGATTTCAGGTTGATGTTCTTCCAGGTCAG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTGTACTGTGCCTTATTTTGGATTCAAGGCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.89%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-5.50,-4.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [45.0-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.68 Confidence: LOW] # Array family : NA // Array 3 2520982-2520078 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP058562.1 Akkermansia muciniphila strain AK32 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= =================================== ================== 2520981 33 100.0 33 ................................. CGTAAGGCGATGATGAAGGCTCAACAAGGAAGC 2520915 33 100.0 34 ................................. GACGAGAAAGACGGCATATTGCTCCCATGTGAAA 2520848 33 100.0 34 ................................. GTGCCACTATGGGATGATAAACCTCATAGCACAT 2520781 33 100.0 35 ................................. GCAATGAGTTCTTCAAACTTTCTATTGGCGTCATC 2520713 33 100.0 34 ................................. ACCAGAGGAAAAAGCCATCGGCGCCACTTTCGGG 2520646 33 100.0 34 ................................. TGCACCCTCATGACGGGAGGGAACTTGGAGATAA 2520579 33 100.0 34 ................................. ATTCACCACATATTCAAACGCTGGCATTTCCCGG 2520512 33 100.0 34 ................................. TAGTCGATAACATGTTAATCTCGTATTCAATGCT 2520445 33 100.0 34 ................................. CGGCTATCAATGTACTTGCAGAACACGATAGATT 2520378 33 100.0 35 ................................. TTCTTCTTCTTCTTCACTGGAAGATTCAATATTCA 2520310 33 100.0 33 ................................. AGCGCGGTTGACAGCGTGAAAGCGTGCACTGGG 2520244 33 100.0 34 ................................. CTTGTATTCATGAAATCTACAACCCCCAACTGAC 2520177 33 100.0 34 ................................. CAGCAACGCGTCCATGTTATTTCCCCTCCCGTTT 2520110 33 97.0 0 ................................A | ========== ====== ====== ====== ================================= =================================== ================== 14 33 99.8 34 GTCGCACTCCGCAAGGAGTGCGTGGATTGAAAC # Left flank : TCAGGCCGTCAGGTTGTTCCTGGCGGCCTTTTTGTTTTTCTGTTTCACTCGTCTTCGTGGATAATCACCCACACGTTATTGAGCACGTCCCGTACCCATGCTGTTATCTCATGACCCTGACGAGTGGCCCATATTAGCACAATGGCCGACTCCCGCAGATGATAGGTCTGGGGATGGGCATTACCCTGGTCCTGCGGAGATATGACAGTAACTGATCCGTACACTGGGATCGGCGTTATAACAAGAGGTGCATTTGATTCAGACATGGCCGCTATTTCTCTTAGTTTGCACTCTTCTTGCAACGACATTGCACTCAACGAAAAAAATTCACCATCTTTCTGTCAAATTCATTTCTATCGCGGAATTTTTCACCTTCTTTCTTCCTGCACGTTGTCCACCCTGCGAGCCTTTAATTCATCAAGCTTTCACCCCTCTTCACCCCAAATTCACCCCTTTTCCATGATCCCTGTCACACCTCACATTGTTGCCGGTTGCTAGGA # Right flank : AGAAAAAGCTCTCCGAGCTTGTTTGGTCTAGAGAGCTTTTTTGTTCCATCATCTTGTTAAGTTGTCAGGAAGAGGGGTGATTATTGAGATTGAGTTCTGCCGGGGGGAGGGACTGGAGCAGAGCCAGGATGGGGTCCTGTGGTGCAGCGCCCATTTCCCGCTGGCGTTTGAATTCCTCCTCTTCCTGCTGCAGGGCTGCCAGTTTGGTGTCTTCCACCAGCGCCTTGAATTTGTCCGCCTGAGAGTATTCCCCGTCCTCGTCCCGGAAAACGCGGGCCAACCAGCGGCGTTTTTCTTCCGTACTGAGCAGGGGATTTTTCATGTGCCGGGGAATGTATTTTTGTCCAGCAGGTTTCCGGCAAGCTGTTCTCCATCCGCAGTGGGCCGGTAAACATAAGGGCGACCGTCTCCAATACGGTTGACATATCCCTGCGCAATGAGATCCTGCAGGATATTGGTGACGGTATTAGGGTGCAGGCGTGTGGCTTCCGTAATGGTGC # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCCGCAAGGAGTGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCTCTCCGCAAGGAGGGCGTGGATTGAAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.90,-7.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [61.7-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,10.15 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //