Array 1 165729-164924 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAETZS010000001.1 Salmonella enterica subsp. enterica serovar Typhimurium strain SARA16 1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 165728 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 165667 29 100.0 32 ............................. AACCGCTGGCGGGCTGATTGGTCTGCAACCAC 165606 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 165545 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 165484 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 165422 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 165319 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 165258 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 165197 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 165136 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 165075 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 165014 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 164953 29 96.6 0 A............................ | A [164926] ========== ====== ====== ====== ============================= ========================================================================== ================== 13 29 99.5 36 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 5.99 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:-0.23, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 184025-181861 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAETZS010000001.1 Salmonella enterica subsp. enterica serovar Typhimurium strain SARA16 1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 184024 29 100.0 32 ............................. TTTGCCGATCCCCTTCCAGACCACCCTTTACA 183963 29 100.0 32 ............................. TGCAGAGTTGTATCTTACCCTGTTTACGTTTC 183902 29 100.0 32 ............................. TTATCCCAATATATTTCGCTATCAGTTACATC 183841 29 96.6 32 ..........................A.. GACTGTTTATACCGGATTCCATGCGTTTTCAG 183780 29 100.0 32 ............................. GAATTACTGGCTAACGACGAACTGACAGTTGA 183719 29 100.0 32 ............................. CCGGACCTAAACCTGAAAAAACCGACGCCCAA 183658 29 100.0 32 ............................. GCTCATTAAATAACTATATAACCCCCGGACTC 183597 29 100.0 32 ............................. TTCCAGAACCGTTTGACTTACTGTGGCCATTA 183536 29 100.0 32 ............................. GGCTTTGGTGAAGATTTCTGATTTGGTCATTT 183475 29 100.0 32 ............................. GATCGGGTGGTGCCGGTGGGCCATGTGGCGCT 183414 29 100.0 32 ............................. GCAGCGGTTGAGTAACTCCTCGTCCACGTCGA 183353 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC 183292 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 183231 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 183170 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 183109 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 183048 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 182987 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 182926 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 182865 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 182804 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 182743 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 182682 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 182621 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 182560 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 182499 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 182438 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 182376 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 182315 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 182254 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 182193 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 182132 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 182071 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 182010 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 181949 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 181888 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================= ================== 36 29 98.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [12-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //