Array 1 163184-160923 **** Predicted by CRISPRDetect 2.4 *** >NZ_RBYG01000002.1 Listeria ivanovii strain Liv13-004 Listeria_ivanovii_Liv13_004_Contig02, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 163183 29 100.0 38 ............................. CGAATTCCTTTTTGCGCTTTTCTTGCCACCTTAGACCG 163116 29 100.0 35 ............................. CTGGAACGGAAGAGGATATTAGTGTTTTAACAGCG 163052 29 100.0 37 ............................. AAAGACAAGCCTAGCGAAATATTAATTATGGACACCG 162986 29 100.0 38 ............................. CTCTTTTTCATCAAGTAAAAGAATTCACGACCGAATTG 162919 29 100.0 37 ............................. AAAGACAATACTTCTTTCTTAGTTTTCGATATTACTG 162853 29 100.0 35 ............................. ACGGTACAGTTGAAGAGGCTATGTTGGAAGCTTTG 162789 29 100.0 35 ............................. TTGGTATCACTATCTTTATAACTACTTCTTTTTTG 162725 29 100.0 38 ............................. AATTGAATATCGCAATCAAACTCTTTTATTGTAACACG 162658 29 100.0 38 ............................. ACAGAAAGCAAAAGCGAAGATGAAATCAGGGATTATTG 162591 29 100.0 36 ............................. ATCGAAAAATATAAAGCGAGTATCCAAGCAGAAGAG 162526 29 100.0 37 ............................. AACATTTTAAGAATTCTAGAAAATGACCCGCATTTGG 162460 29 100.0 35 ............................. TATCATATGCTGGGTATGGTAGACTTCTCATCAGG 162396 29 100.0 35 ............................. TAAAATCTCTTACTTCAGTCGCATTTAAATTTTCG 162332 29 100.0 35 ............................. CACAATGTTTTTATTAGAAGACACAAATACAGTGG 162268 29 100.0 37 ............................. GCTAATAATCTTGGTGGATATAAAGTCCTAGATAATG 162202 29 100.0 37 ............................. GAAGTACTTATTAAGCTCTTGAATGAAGAGTTTCCTG 162136 29 100.0 37 ............................. GTATGTATGACTATTAGTGCCGCCATCTGGTCGCATG 162070 29 100.0 35 ............................. CATAGATATCGCCCAGCTGACAAGGTGACAAGCGG 162006 29 100.0 37 ............................. AAACAAACAAAAAGTCGTTATTTTGAAGTAAAAGACG 161940 29 100.0 37 ............................. ATATTCAAGAGCTTTAGGTGTGGTTACTTTCGTGATG 161874 29 100.0 35 ............................. TTGGCTGTTTCTATCTCGTCCCATTATCAACTTGG 161810 29 100.0 37 ............................. ATGGACATCACTCGTCATCCGGAGGAATATGCTTTCG 161744 29 100.0 37 ............................. TGATTTATCGCCAACTTTCACCAAATGCGGTGGGTCG 161678 29 100.0 38 ............................. AAGTATTCAAGCACAAATTTCTCAGTATCTTCTTTTTG 161611 29 100.0 37 ............................. ACGCTACAAATAAGTATTTCCGCTCTCAAAAGGGGCG 161545 29 100.0 38 ............................. TCCAACCACGCACGGGCGAAAAGTTCTTGATTTTCACG 161478 29 100.0 36 ............................. TGTAAAAGGTCAAACTGGGGTCAAAGTGGGACTTTG 161413 29 100.0 37 ............................. CAAAGTAATATACTATGAATATAGACAAACGAAACAG 161347 29 100.0 35 ............................. GTTCTATTTTCCGATAGGTGCTTACTGGAATATTG 161283 29 100.0 38 ............................. TGGGAAAAGGAGAGGAGCTGCAAAAGCGAAACGATCAG 161216 29 100.0 38 ............................. AAAATAATTTGATTGATACGATGGGTATGCATTCAGTG 161149 29 100.0 37 ............................. GAAGTTATCGCGTCGGAAATTATCACTTATGCGCAAG 161083 29 100.0 38 ............................. GTGGGATGTAAAAACAATTTCAACTGATAAGCCAGACG 161016 29 100.0 36 ............................. AACAACTGCCCCCATCACCATTTTTTCTCACCACCG 160951 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ====================================== ================== 35 29 100.0 37 TTTTTAACTACTTATTGTGAAATGTAAAT # Left flank : TTTAAAATTTGGTGGTGAGTATATGTATGTAATTCTAATTTATGACATTTCTGTTGAATCTGGTGGTGCTAAAGTTTGGCGCAATGTCTTTAAAATTTGCAAAAGATATTTAACACATGTTCAAAAATCAGTATTTGAAGGAGAAATAACTCCAGCACTTTTGGTGAAATTACGAATGGAGCTAGATAATTATATTCGTCAGGATGTTGATTCTGTGATTTTATTTTCTAGCAGACAACAAAAATGGCTAGAAAAAGAATTTTGGGGATTAGCAGATGAAAAAACATCGAATTTCTTTTAGCTGGTTTTTTCTGTCGCCCCCTAGTAGTGTGAAAAACACTGGAGGTCGACAGAAACATGAAATGCGTTGGTGGAGAAGCTTTCTCGTATATCTTACTTAGTTAAAATAGGAAAACAAAACTAAATTTCACCTATTTTTGTATCGGTCGACAAAAATAGGTGCGTGAGGTAAGATGGGAGTAAGGAAAGATTTTGACGGG # Right flank : TCTTAAAAGAAAAGGATGAGCGAGAAGAGGCACTGCCACTAAAAAATGAGAATAAAAGAAAAACACTTTCGTTGGATTCATGTAAAATGAAATTAACGGAGGTGCTTTTTCATCATGTCCCACTTTTCTGAGCAGACTGATTTTATTTAAAAAATCAGTTTCTCAATAATTAGTGTATTCTCTTTTTTTCGTCCAGCGAAAACCATTTTCGCAATCTTTGAAACCGCTTGCAGTAATGGTTAGCTATACTTATAATGAACGTAGCAAATCGGCCAAAAGGAATAAATTTTCAAAATTAGCTAACTGGAGTAGTAGAAAACGGAAAAGTGGAAATATTTCGTTCTATTTTCATTGAAAACGAACAAAAAGGAGAGTTTAAGAATGAAAAAAATCGTATCAATCAGTTGTATTGTTGCAGTTTTAATGCTTCTAGCGAGTTGTGGTAGTGGAGATGCATCCAGTTCAAAAGTGGAGTTTTATACGGATAAGGGCGGAGAAAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TTTTTAACTACTTATTGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: R [matched GTTTTAACTACTTATTATGAAATGTAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,-0.10] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [65.0-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.5 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], // Array 2 178404-175544 **** Predicted by CRISPRDetect 2.4 *** >NZ_RBYG01000002.1 Listeria ivanovii strain Liv13-004 Listeria_ivanovii_Liv13_004_Contig02, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 178403 29 100.0 36 ............................. CATATATTCATCTCATTTCTTATTTATATTTTTGCT 178338 29 100.0 36 ............................. AAACCTTAAATAGGAGGTAAGCAAAGTGATCGATAA 178273 29 100.0 34 ............................. CAAAAATTATGTATAATGTAAGTGCAACGTTGCA 178210 29 100.0 35 ............................. AGAGTATAAACAAAATAAAGCTTCAGAACAGAAGC 178146 29 100.0 35 ............................. ACTTCCTCTGCTAATGTACAGCGCATTTCAATATC 178082 29 100.0 36 ............................. CTCTCTACATCAATAATTCTATATTTCTTCACCTAC 178017 29 100.0 36 ............................. ATTTGTAAGCAAAACAGATAAATTAACAATGTATTT 177952 29 100.0 35 ............................. CTAGTACTCGCCTCGTAAAACTCTTGACGTGTAAC 177888 29 100.0 36 ............................. ACACTTGTAATTGAAAGTGACAAAAGGAAAGCAATT 177823 29 100.0 34 ............................. CAAATTCTGGCACAAGTGGGGCCGCATCGTCCGT 177760 29 100.0 35 ............................. ACGAAAATATCATTTTATCGGACGTTTCGTAAAAA 177696 29 100.0 34 ............................. CACATTTGCTTATTTGGTAGTCCCGCATAATTTG 177633 29 100.0 38 ............................. AAGACAAAGGATGGTGGTCGCCCCGGGGCGGTCGGATT 177566 29 100.0 37 ............................. ATCGTTGCTATATATTTTTGTCATTCCGCTTCCTCCT 177500 29 100.0 36 ............................. TTTGATTTTGTCCATTTTTCCATGTATTTTTTTGAT 177435 29 100.0 35 ............................. GAAGGTGGCAAAGAAACAAGAGCCTATGCGATTAC 177371 29 100.0 35 ............................. ATGTTCGTCAATATATTTTAGTACTGTACATTTTA 177307 29 100.0 34 ............................. ATTTTACTTTCTAATTCTTCAATCGGAACACCAA 177244 29 100.0 34 ............................. CCCATTTACGGAACTATCACCGAGGAACAAAAAG 177181 29 100.0 34 ............................. ACTATTTCCGAAGCAGGTATAAAATTCCCTTTTG 177118 29 100.0 36 ............................. ATTCGTCGGGTATAACGCTAAAAAAGGTACGAAAGC 177053 29 100.0 36 ............................. ATCTTTTGTTATATCATTCAACATAATTTCATTATC 176988 29 100.0 34 ............................. TATTCGTCATATTAGCAGCACTATTCACGTATAT 176925 29 100.0 35 ............................. CGAGAACGTCACGGATTTGCAGCGGCGATGGTAAC 176861 29 100.0 36 ............................. CTCGAAGATAGATTTATGTCTGTAATTTGACCTGTT 176796 29 100.0 35 ............................. TCTATATACCCTGCGTTATCAATTGAAATATAAAC 176732 29 100.0 37 ............................. AACAGACACGAAGGGAAAGTGATTGATAGTGCGCCGC 176666 29 100.0 37 ............................. TTAATCGTTGGGGAATGAGTATTTTATAGGTTTATTT 176600 29 100.0 36 ............................. AACCGGCGAATCTTGCGATGCGGCAACAAGTTCAAC 176535 29 100.0 36 ............................. GAAAAATCGGGCGTAGTTAATTTAGTATTTGCTACA 176470 29 100.0 35 ............................. TCTTTTAACGGCCTTGCCATATCGTCACCACCTAT 176406 29 100.0 35 ............................. CATTTAACTTTCGATTAGCTTTCGCAATTAACCAA 176342 29 100.0 36 ............................. AAAGAAGCAGAATTATTTATCGACGACGTCCTAATA 176277 29 100.0 36 ............................. TTTGCTGGTACTCATTTAAAGTCATTCCATCGCTCA 176212 29 100.0 34 ............................. TCTTATGGCAAGTGTCGCTGCTTTAACACGCTGT 176149 29 100.0 34 ............................. GCTTATGCGACAGCAAGGCATAGAAGCGTATGGC 176086 29 100.0 34 ............................. TTTGAAAGCAACAGTGATAAAGTACGTTGTTAGA 176023 29 100.0 34 ............................. AATTATTACAGTTGTTGCTTCTGGAAGTAGCGCA 175960 29 100.0 38 ............................. CTTCTCTGTTTCTCGGCTCCATGTATCTTCTGCTACTC 175893 29 100.0 36 ............................. GTACCGAACCCACCTCTTGCATAGTCGGAATAGTCC 175828 29 100.0 35 ............................. TAACCAATTTGAGCTAAAAACTCAGATGGCGAAAA 175764 29 100.0 35 ............................. CAGAAAAACTTCGGACGGCTGGGAGCTACTATTGT 175700 29 100.0 34 ............................. CTTATTGTCCTTTTTGTAAAGTCGATTGATTTGC 175637 29 100.0 36 ............................. AGGCATTTCCAGCGCCCAAATAAGCACACTTGCGCC 175572 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ====================================== ================== 45 29 100.0 35 GTTTTAACTACTTATTGTGAAATGTAAAT # Left flank : ATAAAATGTCACTGTACCATCTTTCTTTTCTGTTGTTTTTGTTTTGCTCGAAGTTGAATCGTTCCCACAGCCCGCAATCAGAAGTAAAGCGCAAAACATAACCATCACTTTCAAAACATTTTTCTTCATTCTTGTTCTCCTTTTTTATAAGTATTTAGCAAAATAAAAACCCAGATAAATTAGAAAAAAGCCCAAAAGCCATCTTCCAATCTATCTAGGTTATGCCCAAATTAGGTAACATTCCTGAGTGAGTTATTTGTTTATAGGATGATTTTAGCATAGATGGTAAGCGTTTACAAGTTTGTGTGTTTTCTGTCGATGTGTGGTAGCGTAAAAAGTACTGGAGACCGACAGATTTGCGGGATACATTGGGAGAGAATGAGAGTGGGAGGGATTTGGGTTTTGAATAGTAATTTTAGGAAGTTGAAAAGCCAATTTTGAGATAGGTCGACAAAAATAGCTTTGTGAGGTAAGATGGGAGTAGGGATGAAAATGGACGG # Right flank : ACTTCTGGAATATGTGGGAAGAAAGAACGAAGTCGACATTTATATCCTCTGAACGTGCAATTGTATAATAAATCGAAGGGACTTAAATATCGAAATTGATTTTGAAAATATGGTTAATTATTGAACAGTATAATTGGCATGTGTGGAAGGGAAATTCAATACATACCAAGAGACAGATGCGTTTTTCGATGTGTGAAAATGAAAGAGTAGAAACATGGTTCTACGCAACGGATTAAACCAGATAGAAACAATTATGTCCGTTTGGAGTAAATTGAGGAATTGCAACAAAAAAACAAGGAACTAGTACAAAATTAGTTTCTTGTTAGAGTGGGTGTTGGTTATTTTGAAGGATAGAAGCTTCTAGAGACTGCAGGTCAGTCATAATTTCTTGAACAGAACGTGTTTTTAACGAAGATTCTTCTGTATTAGATTCTTTTTCTTTCTTCTTTTTGGCTTTTTCTTCGGCTTCAATATCGGAAACATTGGTTGATTTAAATTTA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAACTACTTATTGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: R [matched GTTTTAACTACTTATTATGAAATGTAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,-0.10] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [60.0-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.5 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], // Array 1 104636-105793 **** Predicted by CRISPRDetect 2.4 *** >NZ_RBYG01000011.1 Listeria ivanovii strain Liv13-004 Listeria_ivanovii_Liv13_004_Contig11, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 104636 36 100.0 30 .................................... AATGTTTATTATTCATGACTGTAACTATGA 104702 36 100.0 30 .................................... TATCAACGTTTGAACTCATTCAGTCGAACA 104768 36 100.0 30 .................................... TTGACATCGCGGGTGTACCCCATGCGTTCG 104834 36 100.0 30 .................................... TTTTCACCATTTAGTCGAATTCTTGACCAT 104900 36 100.0 30 .................................... GAACATTTAAAGGTAATTGCAAACCTCGCC 104966 36 100.0 30 .................................... CGTACCCATCCACATAGATAGAGCGAGCCG 105032 36 100.0 30 .................................... TAAATCAAATCCGGTGCGTATGTATAAGGC 105098 36 100.0 30 .................................... AGAGTTTTCGCAGGCAAGTCCTCGAAGTTA 105164 36 100.0 30 .................................... TTCCGTTTTTGCGCCCGGTGCATTTACCGA 105230 36 100.0 30 .................................... ATGATTTAGTAAAAGCTATGCAGTTGCCAT 105296 36 100.0 30 .................................... GACAAAATTAGCTTGGTATGACAACAAGAA 105362 36 97.2 30 ........A........................... ACACACTGGTTTAGTAATAGCACATCAAAA 105428 36 100.0 30 .................................... TTGATTTGATTTGAGAGGGGGTGAAAACGA 105494 36 100.0 30 .................................... GCTTAGTAATGCGAATGCTAGGGCTGTTCA 105560 36 100.0 30 .................................... TGAAGCATGGATTTTTAATACAACCCAACA 105626 36 100.0 30 .................................... TTGATGAGGAAACAACACGTCAGAATAAAT 105692 36 97.2 30 ..........................G......... GTTGGCACTTCTTGGAATTACGGGTCCGCT 105758 36 86.1 0 ......A.................G.A..AA..... | ========== ====== ====== ====== ==================================== ============================== ================== 18 36 98.9 30 GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Left flank : AATCAATGATTGATAAACTGACTGCGACAATTAGTGAATTGATAGGTTACGAACTATTAGAACATGAGCTTGATTTGGAAGAAGACGAAATCACGGTCATTGAATTATTTAAAGCCTTAGGAATAAAAATAGAAACGAAAAGCGATACTATTTTTGAGAAGTTAATTGAAATTGTGCAAGTTTATAAATATTTATCTAAGAAGAAACTATTAGTTTTCATTAATGTGTGTGCTTACCTTACAAAGGAAGAGTTGTTGGAATTAAAGCGGTATATTTCTTTATATCAGGTAAAAGTTTTATTTATAGAGCCTAGGAAAATAAAAGGATTTTCACAGATTATTTTAGATGCAGATTATTTTTTGGATATAGAAAATGGCATCTAAAGGTTAAATGCTCTTTGAAAATAAAATATATTTAGTTCAACAGGCATTCAAAATTGAAATCTTGCTATGGATTAATGGCGCGATTACGAAATCTTAGAGAATAAAAATTTCTGCGAG # Right flank : CAAACCATCTAATTTCGGTTTGTTTTTTTATTTACCTAGTATTCCTAGATTCTCAGCATAGCGAAATTTGAAAGTGCAAGCTGGATTTAAAACGAAGGAAGTAAATTGGCAACCAACATATTCGTGGAAACTCCTGAAATGAGACCTGGCTGAAATAGCAGATGAACGTTTTCGCAATGTTGTTACTTCTATGTCTAAACAAGCTTATTTAGCTATTGGCTCTCTTTTTTAACAAGTTTAGTTAAAATGACAAAAGTAGTTCAATTTTACGGTTAAATTAGCGTGTTTTTATGCAATTTTGTGTCATCTTACAGGAGCTGAGTGTGGTATAGTGTTATAGTCAGAGCTCAACCTATTAATAAGTGGGAGAGAAGTGGCGTAAACTTTAAATCCATTTGAAGCGTTTTATTACACATATTATAAGAAGCTATTCTACCTATTTAATAGACATCTATACTTTTCGGACGCTTATTATAAATTTTTTTAGAATAATAATGTAG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: F [matched GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.30,-0.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //