Array 1 5670-6356 **** Predicted by CRISPRDetect 2.4 *** >NZ_BMSA01000070.1 Streptomyces phaeofaciens strain JCM 4125 sequence070, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 5670 29 86.2 32 ..T....AT....C............... AAGTCAGGGCCCAGCGACGCGGCGTAGGCTTG 5731 29 100.0 32 ............................. GGCCAGGACTGTGTAGACCCTGCACGCGGCCC 5792 28 82.8 31 ..A.....-..G.GA.............. CAGCAGATGGTTACCATCGGCGGCCTGCTCC 5853 29 79.3 28 .....T.....GTGA.......C...... ACGCGGGCCTGCCGGGACCGACGACGCA 5910 27 82.8 33 ....-.....T..C.......-C...... GCGCCGACCTCGTTGGGCGAGCAGGGCCGACGG 5970 29 86.2 31 ......TG...G.C............... TCCCGGCGCTGCGCCCGTACGTGTTGCGCGG 6030 29 82.8 31 ...T.......G.AA.........A.... GTCCGCCACATGCCCTCGAAACGGCGGACTA 6090 29 79.3 28 .C.........GTGT.........A.... ATGGTGCGCTCGATGGCTAGCGCCGATC 6147 29 86.2 32 .............CA.G...A........ CAAGCGGGCATCGACCGGACCATGGTCATGGT 6208 28 79.3 33 .........-.GTGA......C....... CCGATCTGCCCGTCCGGCGCCGAGCGTTGCACG 6269 29 75.9 32 .....T.....G.GAA.....TG...... CACTTCGCGGGAATGTGCCGCCACGCCTTGGA 6330 27 75.9 0 ..A.....T.TG.--.......G...... | ========== ====== ====== ====== ============================= ================================= ================== 12 29 83.1 31 CTGCTCCCCGCACTCGCGGGGATGGTCCC # Left flank : CTCCCCGCGCGAGCGGGGAACGTTCCCTCGATCTCGTCTTGTGCTGATGCGGGGTCGGTACACCGTGTCCATGCCACGGGGAACCGACGAAGTGCGGCTCCGGAGGTGACGGAATGCTCCGAACGGGGGCAGCGGGCAGGGTGGTCGCCGTGTGTTGCGGCACTCTGGCCGGTCCGCTCTGAGCGTCGCGGTTGGCCAGCCCGACGAACCCCCTGCTGGTCAGCAGTCGATGGGGGAGTTACCGGAAGCGACTCGGCAGAAGTCCGACCCAAGTCCGCCGTCGACGGTGCCGGCGTTCGGGCCGACGAAGACGAAATCTCCGTCGGCGCTGCCGACGAGCGCGTCTGACATATCGGGTCTTGGCCTGTTGACCTGGGTGTATCCACCGGGGTTGGCGGACCGGGTAGTGGCTGCGCGCGGACGTTCGGAGCAGCGTAGGCGGCTGCTTCCCACACGGTTGATGGTCGTTTGGCGGCGGCGACGTTCGCCGAAGACGGCCT # Right flank : CGGGTCGCGGGGCCTCGGCTGTCGGTTGCACAGCTACTGTGCTGTGCTCCGGTTGATGATCAGGGTTAGGGGCGTCGCATCCACGCCTGGAGGGAAGATGGCCGCAGGCTCCCTTCACAGCTGCTGTGGCGTGATCCCCGGCCCATCCCCAGGCTCAACCGGCAGGACCCGGTGACGCAGGTGGTATGCGACCCGGACTTCTACGAGCCGACGGACGAGGACGACTGCTCGGTGTTCTCGTACTTCTGCCGTACCCATGACCGCTATTACTGGCACGAAGCCTGTGGTGAGGGGGCTCATCTGATCGCCCTGCACTGCGAGCGCCACGGGCCCGAGAACATGCGGCCGCAACCTCTCATGCTGGCCTTCCCGGACGGGTTCTCTCCTCCCCTCAGCGATGCGCAGTTGGCGTGGGTGCGATCGGAGGAGGACGCTTCCTAGCCGCCGCTCCGAAGCGAAACGCCGGCGCAGCGAGGCTCTGCTGCTCCGTGGTGTAGAAC # Questionable array : NO Score: 3.09 # Score Detail : 1:0, 2:3, 3:0, 4:0.15, 5:-1.5, 6:0.25, 7:0.01, 8:1, 9:0.18, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCACTCGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGCTCCCCGCACCCGCGGGGATGGTCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [18-29] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [33.3-35.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 24185-26718 **** Predicted by CRISPRDetect 2.4 *** >NZ_BMSA01000052.1 Streptomyces phaeofaciens strain JCM 4125 sequence052, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================================== ================== 24185 29 75.9 32 GC.G..G.....C....A......T.... TCAGCAGCCTTTTAATCCATTGGTTATGGGTT G [24189] 24247 29 100.0 32 ............................. GATCCCGGGATTGCTGTCTCGGCTCCTGCTTC 24308 29 93.1 32 ........A.......T............ ACGCACGTCACGACAGGCACCAGCGTCGGCCT 24369 29 89.7 32 ..C....T......T.............. GGGCCGTCGGCCTGGAAGGCGGTGGCCGTCGA 24430 29 89.7 32 ...T....T.................G.. GGGCGGAACCGCCGGAGGACGTTCCCGACAGC 24491 29 89.7 77 .......T....A.C.............. CAACTCGTCATGGGTAGGCTTGTCGGCGACGGCTGAAAAAATTTCAAGCGCCGCCGACATAGGCTCGGAGGAGATCA 24597 29 89.7 32 ...T......T......C........... CAGCTTGTCCGGGACGCGAACGGCCTGTTTGT 24658 29 89.7 32 ............C.T..........G... TCGGGCAGGGGGTGGCCGGCCTGAGTGGCGCA 24719 29 75.9 6 ........T..ACCC.T..........T. AACGGC Deletion [24754] 24754 29 86.2 32 G....T..............T......T. ACGCTGTAGCAGACGAGGACCAGGGCCACGTT 24815 29 96.6 32 ........................T.... GCGTGGGACAACTCCGCAGCCGCCAGCGTCCG 24876 29 86.2 32 ...........AC...T........C... ATCGTCCGAACCGTCCCCGGTGCGACGGGCCT 24937 29 82.8 32 G...........C...........T.T.T CACTGGGACTCCAACGCGAAGGCGGGCCACCC 24998 29 89.7 32 ........A...C...........T.... CCGCGCCGCATCATGTCGGCTGAGCATGAGTG 25059 29 89.7 32 ............C.....A......C... AAGGGCCTGGTCGGCAAGCAGCTGGGCGCCAC 25120 29 89.7 33 ............C.........CA..... ACCAGGTTCACGTACACCAGGTCACCGATCTGC 25183 29 75.9 32 G.T...G...T.C.T..........C... GACACCGGCAAGAGCCGCGGGACGGTCGGCTG 25244 29 100.0 32 ............................. GCTCACGTGCTTGGGCTGCACCAGGCAACAGG 25305 29 86.2 90 ...........ACTC.............. TTCTCCATCACGCCGAGGTTGAGCGGCGGGCCCAGCTCCTGCGTGAGCGCATGGTCCCAAGGTGAAGACCCGGGGCGGCGACCTGGTTGA 25424 27 82.8 32 .........-.-C............C..A GTCATCTGGATCGACATGACGTCGGTCGTCTG 25483 28 89.7 32 ........G....-.T............. GCGCAGAAGCTGAGAGCGGACAGACTGAAGCA 25543 29 89.7 32 ........T...C...........T.... CAAGGCACGATCCGCCACCTGGACCAGGTGCC 25604 29 93.1 31 ...T...................A..... GCGGGCACGGCCACCAGGGTGGCGCCGCACG 25665 29 93.1 32 .C.T......................... AGAAGCTGACGGCCGACTCCATGGGAACCTTG 25726 29 93.1 31 ...T...T..................... GCGTACCTCCAGGTCTTCGGCCCGGTGAGCC T [25740] 25787 29 86.2 32 ......T.......T.........T...G GCTGTCTCAAGGTCTGCGCGGCCGCGGATGGC 25848 29 89.7 34 .....T......C.............A.. TATGACCATCGCCGAGAAGGGTGGCGATGGGGAT 25911 29 82.8 32 ...T.....A.A..G..........A... GCGCCCGAGTCCGCCATGGTCCCGGTGGACGG 25972 29 86.2 32 .....T......C.T.............T ACCGACGCCCGCGCCCAATACCGCATCCGGTA 26033 29 86.2 32 .......TT...C...T............ GGCACCGGCGTGACGCGGCTGAGTGGCCCGGC 26094 29 79.3 32 ......T.T.T.CCC.............. GACGACCCGAGCCAACTGACCGGCGGCCGCTG 26155 29 89.7 32 ........T...C.G.............. CACTGCGCGGCCATTACCGCAGCCCACGCCAC 26216 29 82.8 32 ...........ACCC.........A.... AAGGCCCACGCGGGATTCTGGCGCGTGGCCGA 26277 28 82.8 32 ............C..T.-......T.T.. GAGTGGACGACCGACGACGCGGTGGTGGTCGC 26337 29 86.2 32 .....T....G.C...............G GGCTACCTGTGCGACGTCCGAGGCAGGGCCAT 26398 29 79.3 12 ..........T.C...T.......T..AA GGGGTACGACCG Deletion [26439] 26439 29 96.6 32 .........................C... GGGTCGGGGGAGTCGGCGTTACCCTGCTGCCG 26500 29 86.2 32 ...........ACCT.............. TGGGCTGCAGCCTCCAGCTCCCAGAGAGAGCC 26561 28 75.9 32 .......T..-ACCC.............T GCCGTCTACTACAGGAACCTGGGCCGCCTGAA 26621 29 79.3 40 .....T..T..ACCT.............. TGCGGGAGACGGAGGGGACATTCACCAAGAACCTGCTCAC 26690 29 89.7 0 ........T.................TT. | ========== ====== ====== ====== ============================= ========================================================================================== ================== 41 29 87.2 34 CTGCTCCCCGCGTGAGCGGGGATGGTCCC # Left flank : AGGAGGAGCGCAAGGTCATGGTTGAGGCCGGGCGCAAGGGCACCGTCATCATCAGGGATCGTCAGGTGGAGGTGGCGGACAAGGCGAAGCTGCGCGCAAAGCAGGTCTGCACGCTCGTCGAGACGCAGCTTCCCTTCGAGTTCAGCCCGTTCAGCGAGCACCTGGAGATGTGGCAGCGGTTCAAGGTGCGCCCTGCGAAGAACTCCGCCAAACCGTGCGACACCGATGCGAGGTACTGCATCTACAGCGAGGCCTTCAACTCTTACCTCTACACATCGGCCTGGGTTGCGAAGATCATCAAGGAGATCGGTACCGTTGAGAAGTACCGCGAGTTCTTCGGCAAGGAGCCGCGCATAAAGACAGTCATCTCCTTGCCGAAGCAGGCGGTCTCACCCACCGAGGAGGGGGAGACCCACCAGCAGAGCAAGAGCGCCTGACCACGAGAGCACCCGACCCACGGCGGAGGGTTGCGTGCTCTGCTCGGGCGAGTCTGCAACGGA # Right flank : CGACCGGCACCGCTCTCTACCGGGAGAAGGTCGGCTCTCCGTGCGAGCACCGGGGCTGTTTCGGTGCCGGCGGCTGTTCGGCCGTCGGGCCGGTGGAGGGCTGGTGCCGCAGGCGCGGCCGGCAGGAGGAGGGCAGCGGAGGCCAGGGGGGCGGGCGGCCGGCTGCCGGTTCGGCAGCGGCACCGAGATCTTGTCTGTGCCGTGGTGCCCGGCTCTCACCGCACCCGGTGAAGGCCGCCCCTGCTGCACTCATCCCCCTGCTGCCCCCCGCCCCCTGCTGCGCCCCGCTCCCTGCACTCCGCCCCTCCGGCCTGCTCGGCTGTGTCGCGTCGGCCGGATCCCGCGCCCCGCGCCCTGCACCCCGCTCCAACGGTCTCTGCGGCCTACTCCGTCCGGCGTGCTCGGCTGCGTCGCACCGGCCGGATCCCGTGCCCTGCACCCCGCGCCCTGCACCCCGGTTTCTGCACCCTGTGTCCTGCGCTGCGTTCCGTCCGGCGTGC # Questionable array : NO Score: 4.42 # Score Detail : 1:0, 2:3, 3:0, 4:0.36, 5:0, 6:0.25, 7:-0.27, 8:1, 9:0.08, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGTGAGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCGTGAGCGGGGATGAGCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-6.50,-6.30] Score: 0/0.37 # Array degeneracy analysis prediction: F [38-53] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [30.0-30.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //