Array 1 448929-450908 **** Predicted by CRISPRDetect 2.4 *** >NZ_MZBG01000001.1 Salmonella enterica subsp. enterica serovar Albany strain 70-0076 NODE_1_length_684004_cov_1.42542, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 448929 29 100.0 32 ............................. GATATGGGGCTTGATCTTGATTTATTTAATAC 448990 29 100.0 32 ............................. ACAAAAAAGACGAAACCAAAATCGACGCCGCG 449051 29 100.0 32 ............................. CCGTCATGGCGGATATTCGTCTGATTGGCGAC 449112 29 100.0 32 ............................. GGGATTGCGGGAATTAGTATTAAATCCGGCGT 449173 29 100.0 32 ............................. GAATTGCGGGAATTAATATTAAATCTGGCGTC 449234 29 100.0 32 ............................. ATAATCAGGTCGTTAATATTTTTGGTCGCCGC 449295 29 100.0 32 ............................. CCCACGCGGCACAGCTGGCAGAGGACGAAATG 449356 29 100.0 32 ............................. CGCTGGTGTACGACATCGCCGACATGATCAAA 449417 29 100.0 32 ............................. CGCCTCGCAAAACTGGTCGGGGTTTTTCCCCA 449478 29 100.0 32 ............................. TTGCGTCAGGTCGTCGTTTTTTGAGAACGCCA 449539 29 100.0 32 ............................. CTAAATAAAACCTGTAATTGCTCCCAATCGTA 449600 29 100.0 32 ............................. AGGGGCAGCTCCTGGTCGATGAGGTTCTTGAG 449661 29 100.0 32 ............................. CCGTCGGCCTGACAGCCACAGCAGTCAATACA 449722 29 96.6 32 ............................A TGCTGGTCACGCCCGGTTTAGCGGGTAAATTC 449783 29 100.0 32 ............................. TCACGGGGTCCGACGCGGATGTAATGAGTTAT 449844 29 100.0 32 ............................. GCGTTGGCGTCGCCCAACACCATCGCCGGGGC 449905 29 100.0 32 ............................. TTACTGGAACTGTCACTATACGTGGAACGTCG 449966 29 100.0 32 ............................. ACAACCGTCGTTTTCTCCACGACGTCGAGAAG 450027 29 100.0 32 ............................. ATCTCCGGCACGTGCGATAACGGGTCTGATTA 450088 29 100.0 32 ............................. CGACCCAGCGTTACGCGGTAATATTTCGCACC 450149 29 100.0 32 ............................. GACGTTGATTTACACGGCAAAGATACGGAATC 450210 29 100.0 32 ............................. GTACTGGCCTATTCCACATACAGTGGCACGCG 450271 29 100.0 32 ............................. TAGCTTAATCACGGTGCGTCCCTCCTCCGTTC 450332 29 96.6 32 ...C......................... ACCTGATTGAGGTAATCATGAAAAAAATATTA 450393 29 100.0 32 ............................. GCTGGAGCGCAACTGCCAGTGACTACAGAAGC 450454 29 96.6 32 ............T................ AGCACGCCACAGCGCGTAACTGTCGCAATAGA 450515 29 100.0 32 ............................. CGTCTTATCAGGATACCTGCAAACAGATGTTG 450576 29 100.0 32 ............................. ACCCCCCATTTACTGTTATTGTAGGGATAGCC 450637 29 100.0 32 ............................. CGAGCGCGGAATGATTTTTAACGCTGAGATGG 450698 29 100.0 32 ............................. GCTGGAATGGTACGGCTTACCAACTTCCCTGA 450759 29 100.0 32 ............................. TGTTTGCCATTCTCTCGCGTGCTGAGGGAGAC 450820 29 100.0 32 ............................. ATTTGCGTCAGACTACCGACAGGGGCTGGTAT 450881 28 93.1 0 .......................-.G... | ========== ====== ====== ====== ============================= ================================ ================== 33 29 99.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTACAGCCTATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCTCTATCAATTTTACGGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTGGTGATGATAAAAAATAGTTTATAAACAACAATATACGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCATGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 467466-470364 **** Predicted by CRISPRDetect 2.4 *** >NZ_MZBG01000001.1 Salmonella enterica subsp. enterica serovar Albany strain 70-0076 NODE_1_length_684004_cov_1.42542, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 467466 29 100.0 32 ............................. CGAACACTGGCTTAAGTGCCATTGCTGGAAGT 467527 29 100.0 32 ............................. CGTCATCATACCAACTGCTGGTCGATACGATT 467588 29 100.0 32 ............................. ATAACAGCGGCCACAATATAAACAATGGTTAA 467649 29 100.0 32 ............................. CATTCTGACTAACGCCACCACAATTGCCGCTA 467710 29 100.0 32 ............................. ATGTCAGCGCAGGAGATGGCGGCGACTGCTGG 467771 29 100.0 32 ............................. CGCCGCCCCCATCACAGCACCCCGGCCAGCTT 467832 29 100.0 32 ............................. GTCTTGAGCAGTGGGCGCAAGAGTCTGGTTAT 467893 29 100.0 32 ............................. GAATCGCGGGAATTAATATTAAATCTGGCGTC 467954 29 100.0 32 ............................. CGGGCATTTGCCCGCTTTTCATTACAGTGATT 468015 29 100.0 32 ............................. TTCTGGCAATGGTCTTATTTTTTGAGGTTTAG 468076 29 100.0 32 ............................. GTCACGTGCGGTTATCCTGCAATTTCTGACGA 468137 29 100.0 32 ............................. GTTTACAGCCTGAGCAATGCCGGAATGAATGA 468198 29 100.0 32 ............................. TATTTCAATATTCATTCATTGCAGGCGTAGGA 468259 29 100.0 32 ............................. ACGCGAGCGCCGGTAGTCAGCACATCATTAAA 468320 29 100.0 32 ............................. CATAACCATAACCAAATTGGGTTAATGGCGCC 468381 29 100.0 32 ............................. CCAGCCTCTTCAACGAGTTCGAGAAACGCGGT 468442 29 100.0 32 ............................. TCTGGTCGTCCGAGGCTGAGGCCGAGTGGCTG 468503 29 100.0 32 ............................. CGCACCTGCCGGGACATGACCCTGCCGGAGCT 468564 29 100.0 32 ............................. GCGTTTAAACGCTTTTTTGATATCGGCTTCAG 468625 29 100.0 32 ............................. TTAGAGTTGAAATTGATGGCATTGAACTTGGC 468686 29 100.0 32 ............................. TACCAAAGATACCGCCGCGCTGCTTTCTGGTA 468747 29 100.0 32 ............................. GCATTGCCTGGCTGAGTCCGTCGCTAACTGCG 468808 29 100.0 32 ............................. TAGCTTCTTTGTTCGTGCGGGGCGGATTATGC 468869 29 100.0 32 ............................. CATAATTTACGCGGCCCTTTTTTGGTCACCCA 468930 29 100.0 32 ............................. CGAATAAACAGGCCTGTAACGCGCTCCAGCGT 468991 29 100.0 32 ............................. GCTCCGCCTTGAAAATAACATCTGACATTGTG 469052 29 100.0 32 ............................. TGCCGGGGTTCTGCAGTCTCTATTTTCCTCGC 469113 29 100.0 32 ............................. GAGCTGATAGAGGCCAACCCGGACGCAAAAAT 469174 29 100.0 32 ............................. TGCACATACATCCTCACTTACTGGGTCTGACA 469235 29 100.0 32 ............................. AGCTGTTCGGCGTGGCGGCGTAGCGCCTCGGG 469296 29 100.0 32 ............................. CTGCTGATGTAATGGCCGACGCAGATGCTGTG 469357 29 100.0 32 ............................. AAAGTTGACACAATAGCGAAATCAATTACTGA 469418 29 100.0 33 ............................. TTGTTGCAGGCGGGAGAACGCAGCGCGTACCCC 469480 29 100.0 32 ............................. GCGACCTGCTCGACAGCATTCAGTTTGTTGTT 469541 29 100.0 32 ............................. TGATCCAGCCACTTAAACAAAATGATCCACAT 469602 29 100.0 32 ............................. GGCCACACCGACAACCGCAACGGATACAAACA 469663 29 100.0 32 ............................. CAGCCGGAACGACAGCAGCGACAGCGACGTGG 469724 29 100.0 32 ............................. ATATTATAAAAAAAATAATAACCTCTCAGAAA 469785 29 100.0 32 ............................. GTTTGGTTCATCCTGAACGGCGTTCGTGGGGA 469846 29 100.0 32 ............................. CGCCCGCATGATGGCGCGGTTACTTAATGTCA 469907 29 100.0 33 ............................. CGGTATGCTATTGACAGGAGTGAGATTTTAGAT 469969 29 100.0 32 ............................. AATCTTCAGAGGACTCAGATCCTGATTACGTT 470030 29 96.6 32 ............T................ TTGATTACAGTAAAATTTACGTTTATTCAGTC 470091 29 100.0 32 ............................. AAATCTCCACCGTGGATATTTCGGTTATTGGT 470152 29 100.0 32 ............................. ATGTGCGCATTATTGCTAACCATAGAGACTCA 470213 29 100.0 32 ............................. ATATTTTGGCAACTCGTCGTACATTATCGCCA 470274 29 100.0 32 ............................. TCGCACAACGCCTGGATATCCGCCCATCGGCC 470335 29 100.0 0 ............................. | A [470362] ========== ====== ====== ====== ============================= ================================= ================== 48 29 99.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGCACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGCCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCGCAAAGATCCGCGAGATGATATGGCAACAGGTTTCCGTTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAGGTTTTGAGTTTCAGACTTTTGGTGTAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAAGTTAGAGATCTTTAAAAATTAGGAAAAGTTGGTGGGTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGATTTAGA # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCTCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //