Array 1 103148-103385 **** Predicted by CRISPRDetect 2.4 *** >NZ_FXXZ01000187.1 Akkermansia muciniphila isolate Elephant.fasta, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ===================================== ================== 103148 33 69.7 34 .AGT.G.A.TCTC.T.................. CCCCATATATTATCAGCTACAATGGTCATATTAT 103215 33 100.0 37 ................................. CTGTACCCCGGATTCCGGAGGATAAAAACAATAGAAA 103285 33 100.0 35 ................................. TATTGCTCGTTGCTTGTCTGGCCGTCACAACATCC 103353 33 93.9 0 ...........T....................A | ========== ====== ====== ====== ================================= ===================================== ================== 4 33 90.9 36 GTCGCACTCCGCAAGGAGTGCGTGGATTGAAAC # Left flank : CCGCCGTGAAAATTCCGTTGATGGCCTGTCTGGCCTCCGCTGTCTCCGCGGCGTTGGTATGGCTGTTGAGCCTGAACAGGTGGACGCGCAAAAGCATCATGTAAACCGCGGATATTTTCCGCAGGGCGCTTCGGGACCACGGCTATCCCGGGGTGCCTCTTCTTTTGTGGAAAACAGAATAAAACGGTTTCCGGGGAGAGTCCTACAAAATTCTGGACGGGAAAGAGGGAACAGGCTAGGATGTTTCCGCATCGTGCACAGGCCTTGGTTGCCGGAGATGCGGGCTTTTTAACGTATGAAAAGCTCCTCTCCCGGTCTTCCTTCCGCCGACCCCAAGCTCACAGGAAATTTCCGGAATACCGGCGATTTTCGTAATCCGTTGGGGTTCTGATCTTGACAACTATCATCTCTTTTTACGACCTGGAATCTTTGTACCTCCCATGGGAGGTTGGCGCAAAACGCCCGTTGCACTGTTGATAATCAGTGCCATAGACGCCCAG # Right flank : AAGAAAAAGCTCTTCGAGCTTGTTTGGTCTAGAGAGCTTTTTTTGTTCCATCATCTTGTTAAGTTGTCAGGAAGAGGGGTGATTATTGAGATTGAGTTCTGCCGGGGGGAGGGACTGGAGCAGATCCAGGATGGGGTCCTGTGGTGCAGCGCCCATTTCCCGCTGGCGTTTGAATTCCTCCTCTTCCTGCTGAAGGGCTGCCAGTTTGGTGTCTTCCACCAGCGCCTTGAATTTGTCCGCCTGAGAGTATTCCCCGTCCTCGTCCCGGAAAACACGGGCCAACCAGCGGCGTTTTTCTTCCGTACTGAGCAGAGGATTTTTCATGTGCCGGGGAATGTATTTTTATCCAGCAGGTTTCCGGCAAGCTGTTCTCCATCCGCAGTGGGCCGGTAAACATAAGGGCGACCGTCTCCAATACGGTTGACATATCCCTGCGCAATAAGATCCTGCAGGATATTGGTGACGGTATTAGGGTGCAGGCGTGTGGCTTCCGTAATGGT # Questionable array : NO Score: 8.41 # Score Detail : 1:0, 2:3, 3:3, 4:0.55, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCCGCAAGGAGTGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCTCTCCGCAAGGAGGGCGTGGATTGAAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-7.00,-5.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [45.0-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.74,0.68 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 172768-172008 **** Predicted by CRISPRDetect 2.4 *** >NZ_FXXZ01000187.1 Akkermansia muciniphila isolate Elephant.fasta, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 172767 36 100.0 30 .................................... AGACAGGGCTGGGGGACAAATACGTGGAGG 172701 36 100.0 30 .................................... AGCACTACAGCATAATATCCAGAGCCAGAG 172635 36 100.0 30 .................................... GTCTTTGTTCCTAATGGAAAGAACACCGTT 172569 36 100.0 30 .................................... CTTCGCATAACACACATAATGCAAAGTCGG 172503 36 100.0 29 .................................... TCATCACTCTTTCCGGCGTTCCCCTCATC 172438 36 100.0 30 .................................... CATTTGACAGGGGAGACTTCCATAAGCTCA 172372 36 100.0 30 .................................... AATATCTAAAATCCTCAAACCTCTACACCG 172306 36 100.0 30 .................................... GGAGGAACCTTCTACCCCTACGGACCTGCT 172240 36 100.0 29 .................................... TTGTGGCGCAGCATGCGCCGCGGCCATTG 172175 36 100.0 30 .................................... GTAGCGCAGGTAGAGCTGACGGATGATCAT 172109 36 100.0 30 .................................... GACTTTGATGCCGAAAATAATGCTTATCAT 172043 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 12 36 100.0 30 GTTTTGCCTTGAATCCAAAATAAGGCACAGTACAAC # Left flank : CTGACGTGGAAGCATATCAATCTGAAATCCGGCCTGGTTTCACTGGCGCCCACCCATACCAAAACGGGAGGGAGCCGCCATGTTTCCATCCTTCCCGTGCTGGGTTCCATCCTCAGCCGGATGTCTTCCGCCGGTTCCCCCGCCCGTTCCGTCTGCCCGCCCAACTGGGAAAAGAAATGGAAGGAAGTAAGGCGCCGGTCCGGCATCCTGAAGAAAAGCGGATGGGTTCAGGACGTGCTGAGGCATACCTACGCCTCCTACCACCTGGCCCATTTCTGCAATCAAAACCTTCTCCAGAAGGAGATGGGACACTCCTCCCCCTCCCTGCTGCTGGCCCGCTATCTTAATATGGAGGGCATCACCTCCGCAACCGGCGCCATGTTCTGGACGCACAGCTTTGTTTCTCCCGCTCCGTTAAAGGAAGACTGACAAAAATCCGTCTGGAATTGCGCGGCCAAAGGCGGAGCAATCCCCTGCGCCATCAGACCGGAGGCGCATTT # Right flank : AGATACTGTGCCTTATTTTTATGTTCAGCGACTTATAAAAAAATACGGCGTCCGATATTTTTACCAGAGGAGCATCTGCTGAGGCAGGGAAACCTCCTGTCGGGGACAAGACCTGCCATGAAAAACGAACATCTTATCCCACTGGATATTCGTAACGAAAAGACAGCGGACAGAACCATCAGGCGGTATCATTTTCTGGATTCTGCGGGAGTGGGTAGCCATTCTTTCCTGAGTAACGCACGCGCGGGCATAGACGCTATACTGAATCATCGTATAGCCGTCTTCTAAAAGAGCCTTACGGAAATATTGATAGTTTTTTTTATCTTCCGGCGTGGTTGTGGGAAGATCAAAGAACACAACTAGCCAGCCCATTTTATAGTTGTCATAAGCCATGGTTCATACGGTTCGGATTGTCCGGCAAGAACTGCTTTGCGGAAACTGCGGCAAACGGCCTCTACCGCCGCTTTCAACGGCAGCTGTTTATCCCGGTACATGACAGA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTGCCTTGAATCCAAAATAAGGCACAGTACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-4.20,-5.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [66.7-36.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.37 Confidence: LOW] # Array family : NA //