Array 1 5552-6677 **** Predicted by CRISPRDetect 2.4 *** >NZ_SESJ01000002.1 Meiothermus sp. PNK-Is4 contig_00002, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ===================================== ================== 5552 37 100.0 36 ..................................... TTTAAATACAAAATAAAAAATAAATTAAGGGGGCTA 5625 37 100.0 33 ..................................... TTTTAGTACCCTACATAATAATTCTATATTTTT 5695 37 100.0 36 ..................................... CACGCCCGGGTACCCGGGCACCTGGCGAGGACGCAC 5768 37 100.0 36 ..................................... AATAAACAAAAACAAAAAAACACTGCAAAATTGCAG 5841 37 100.0 34 ..................................... CTCCAGCACGTAGGGAAGCTTAGCAAGGGCAGCA 5912 37 100.0 37 ..................................... ATAAGCTTCCTCAAATGCTTTGTCAAGTGCCTTCAAG 5986 37 100.0 37 ..................................... GAGACGATGTCCACTCGAGACGATGTCCATTCATCAC 6060 37 100.0 35 ..................................... TACACCAGTTTCTTGCTTTGCCCACTCCATGATTT 6132 37 100.0 36 ..................................... TCTTCCCGAATGCGCAAGCGGTCATATCCCTTGACC 6205 37 100.0 35 ..................................... ATCGTGATGAATGGACATCATCTCAAGTGGCCATC 6277 37 100.0 37 ..................................... TTTTTGTAATAAAAGGTGGAGATTTGTTCTAATAGAT 6351 37 100.0 35 ..................................... CCAGGCGGCCTCCAGCTCTTCCTCGCTTGCCACTG 6423 37 100.0 35 ..................................... TTCTAATCCAACGCAAATATTTAATAGAGATTTGC 6495 37 100.0 35 ..................................... TTCTAATCCAACGCAAATATTTAATAGAGATTTGC 6567 37 100.0 36 ..................................... CAGCGCAAAAGGTGATGATATGACCCACACACCCAT 6640 36 81.1 0 .........................T.C..CC.T.G- | GC [6671] Deletion [6676] ========== ====== ====== ====== ===================================== ===================================== ================== 16 37 98.8 36 GTCGCACTCGGGCGAAAGCTCGAGTGAGGATTGAAAC # Left flank : CTTGAACAAGGTGCGCGAGCAGCTCAAACGCGCCCGCGAGGAGGCCCTGCGCACCAACGGCTTCTGGCTCAACCGCCTGGTCAATTTCGCCCAGTACCCCGATCTCGACCCCAACGACACCCAGGGCTACTTCACCACCGTAGAGGGCCTCACCTCGCAGGACCTGCAGCGGATGGCCCAACTGCTCTTCCGGGACAGCTACCTGAAGGCGGTGCTCTACCCGGAGGCGATGAAGCCCTGAGCAGGCAAGCAATCGGCCTAGGCCGTCTTGATCCTCTTTTGGATTGGCCAGCTATGGGGGTTGTAGTAACTTGAAGTTGCGCGAACCCCAAGCAAGCGCCAAAACCCGGGGGGGTTCGCGCAAGCCGAGAAATCGGCTAGGGGACATTGAAAACCCGTTTTCCCCTCACCTTCCCCCACCCTGCGTCGGAACCCTTTTTAGGGGGGTTCGCGCAAACGCCCTCTTGAGCGCCGTCCAGCACGCGCGCTAGAATGAGGCC # Right flank : GCCAGCTCGAGCCCCCCCTCCTTCACCTCAATCCTCAGGTGCCCACCGTTCTTGAGCGGCCCGAACAGCAGCAGGTCGGCCAGGGGCTTCTTGATGCGCTCCTGGATCAGGCGGGCCAGGGGGCGCGCACCCATGAGGGGGTCGTAGCCCTTCTCGGCCAGCCACTGCCGGGCCTCGGGGGTGATGGCGAGGCTCACCTTGCGCTCTTTGAGCTGGGCCTCGAGCGCCCTCAGGTTCTTGTCCACGATCTGACCCATGACCTCGGGGGAGAGGGGCGCAAAGTGCACGATGGCATCGAGGCGGTTGCGGAACTCGGGGGTGAACAGGCGCCTTATGGCCTCGTCGGCGGCCTCGGCTTTGGGCTCGCGCAAGAAGCCGATGCGGGCCTCGCTGGCCTCGGCGGCTCCGGCGTTGGTGGTCATGATGAGGATGGTGCTGCGGAAGTCCACGGTTTTGCCGTTGTGGTCGGTGAGCTTGCCGTAGTCCATGACCTGTAAGAG # Questionable array : NO Score: 9.20 # Score Detail : 1:0, 2:3, 3:3, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCGGGCGAAAGCTCGAGTGAGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: F [10,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-13.10,-8.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [31.7-33.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : NA // Array 1 17966-17419 **** Predicted by CRISPRDetect 2.4 *** >NZ_SESJ01000017.1 Meiothermus sp. PNK-Is4 contig_00017, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ========================================== ================== 17965 35 100.0 40 ................................... CTGCTCCGCCTTGCGAAGCATCTCCGCATACTCGGCGCGC 17890 35 100.0 40 ................................... TCGTCCGCGCATTCTCGGCGGATACCTTGGTCGCCGAGAT 17815 35 100.0 28 ................................... GCAGGGGTAGGGGTCCACCACCACCGCC Deletion [17753] 17752 35 94.3 39 ....................C..A........... GTCACCGCTGCGTCCCGCCCACTTGTTCAAGTACCACCC 17678 35 100.0 38 ................................... TCCACCACGGCCAGCCAATCGGTCTCTTGAATGACCTC 17605 35 100.0 40 ................................... GCGGGGCTATTTCCGCCGGGTGAGCACCCGCATACTCACG 17530 35 100.0 42 ................................... GCCACCCACCGGGGCAGCTCGCCGGGGCCACGAACCTCGCCC 17453 35 97.1 0 ....................C.............. | ========== ====== ====== ====== =================================== ========================================== ================== 8 35 98.9 38 GTCGCAAACAAAAAGCCCCGTAAGGGGATTGCAAC # Left flank : CACCGGCAGGTGGATGGCCCCCTCGAGGCTCCCTCGCAGGTACTCGGCCTCGGGCCGCACGTCCACGATGAGGGGGTTTTCCCGGAGGAAGGTCTCGAGCATCTCGGCTTTGAGGTTACGCATACCCCCAGGATACGTCGGCCAAGGGGAAACCCGCAAAAAATCCCTGCGCGATCGCACCCCCTCGCTGGAAAAAGTGGGCACCATCCCTGTCTGGAAGGGCACAAAGCCCGCTTCTCAAAACCCGGCGTTATGTTTTGCGCAAAATGCTATAATCCTCCTAGCGGGGCCACCCGCAGCGCACCTTGAAAGCCAGTTTTTCCCTTCTCCATCGCAAATCCCTGCGACACAAAATCTAAATGTGCAGGGAAGTAAGCACCCATCGGCATAAATCCCGCTTTTCACCTCGCTTATCCACAGGGAGGCTGTGGATAACTCCACTTTCTCATAAATCTACCCTCCGGCACCCCTGTACAGGACGGGGTTTTATGGGGTATGCT # Right flank : CAGGCGGCATCATGGCCGTGGTCCGGTCGCAAGACTAGGTGTGTGCGTGGCCTGCCCCGTCCCGCGCATGGGCGGCGTGGATTGAAAGTTTATGCTTGAACCCGACATCTTTATTCGGGTAGCATGGGCGCTTGGAGCCGAGGGCGGCCAAAAGTGGTAGGCTGACCGGCTGGAGAGCTGAGGACACGATGCCAGCACGCACGGACATCAAGAAAATCCTGATCATCGGGTCTGGCCCCATCACCATCGGCCAGGCGGCGGAATTCGATTACTCGGGAACCCAGGCCCTCAAGGCGCTGCGCTCGGTGGGGTACGAGGTGGTGCTGGTCAACTCCAACCCGGCCACCATCATGACCGATCCCGAGCTGGCCGAGGGCACCTACCTCGAGCCCCTCACCGTGGAGTTCCTGGAGAAAATCATCGCCAGGGAGCGGCCTGACGCCCTGCTGCCCACCCTGGGCGGCCAGACTGCGCTCAACCTGGCCATGCAGCTTTACGAG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCAAACAAAAAGCCCCGTAAGGGGATTGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,13] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-6.20,-7.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [1-2] Score: 0/0.41 # AT richness analysis in flanks prediction: R [31.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.01 Confidence: HIGH] # Array family : NA // Array 1 38494-39042 **** Predicted by CRISPRDetect 2.4 *** >NZ_SESJ01000018.1 Meiothermus sp. PNK-Is4 contig_00018, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 38494 37 100.0 37 ..................................... CCATTAGCTCGATCGGCCATTAGATAGAATGGCCATC 38568 37 100.0 36 ..................................... TTCTTTTATTGTTTTCATTTTTTCCTCCTGCTAGGC 38641 37 100.0 35 ..................................... CCCGCGCCATCCTTCATTGGCCGCCAAGGGCCAAC 38713 37 100.0 36 ..................................... CAGCTCAGCGAAAACTACCTTGTCTGCCGCTGTGAG 38786 37 100.0 35 ..................................... GTGGAGATTCTCTCCTCCACCACGACGCGGGAAGC 38858 37 100.0 36 ..................................... CCCATGCCTTGGAGCAGGAAGGCGCGAGGCCCACCC 38931 37 97.3 38 ..........................C.......... TAGGGCGATCTCGTCGCCCTGCTCCTCCAGCTCGAAGG 39006 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ====================================== ================== 8 37 99.7 36 GTCGCACTCGGGCGAAAGCTCGAGTGAGGATTGAAAC # Left flank : TTTTTGAGTTAACGTTAACTCAAACGCTAACACCCAAGCTATACCTTGTCAACCCCCACCCGGGTAGTTCGATCGACGGAGCGAACTCCGTTACCTGGCAGTAAGCCCGGGCGTACAGGACCGCCAGCGCGAAGAGCAGATCGGTGAGCAGCAGATACAACAGCCCCACGCCGAGCAGGCTCACCACAGGTGCGAACAGGAAGAGGGGGCTGGCTCCTCGAGGTCTGCACCAGAGCTTGAGGAGGTGTTTGTAGTCGTAGAGGAGATCGTCCTCTTAGAGGCTCTGCGTTTCCCGGAGTTCCTTTGGTAGTCTGAAGTTGCGCGAACCCCAAGCAAGCACCAAAACCCAGGGGGGTTCGCGCAAGCCGAGAAATCGGCTAGGGGACATTGAAAGCCCGTTTTCCCCTCACCTTCCCCCACCCTGCGTCGGAACCCTTTTTAGGGGGGTTCGCGCAAACGGCCCCTTGAGCGCCGTCCAGCACGCGCGCTAGAATGGGGCT # Right flank : CGCCCAGCGCCTCTTTCGCCGCCGGTAGGCGGGGTGGCGCGTCAGCGCTCTGTCCCAACAGGGGATCGCCCCAATTGGGGGCGGGTCGGGCTTCCTCAGCCCGACCCAGCCCGCTATATCGTTCGCAGTGGCCTAGCGCGGCGTCCCCACCCCCGGGCCTAAGGCGAGGGGCTTGTCGAGCCTCAGCCAGATCATCTCGTTGTCGTCTTTGACGTTCTGGCCGCGCCCGCCGGTGCCGGGGTAGTTGTTGTCGTTGAGGACCAGCAGCGTCCTCGCATCCAGCACCAGCACGTCCTCGATGGTCACGAAGGGGAAGCGGAAGACCCCACCCTTGGTGTAGGGGGTCAGGTTGGCGGGATCGGCGATGTTGAGCAGGTCCGCCACCAGCTCTTTGGCGAAGAAGCCCTGGGCGTCCTTCCGGCTCAGGTCGACCTTGTAGATGCGCTTGAACTGCGCCGCCTCTCCGGTGGCCTGGTCGCGCTCGATGACCAGGTACTCGT # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCGGGCGAAAGCTCGAGTGAGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: F [10,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-13.10,-8.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [30.0-26.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : NA // Array 1 43204-40363 **** Predicted by CRISPRDetect 2.4 *** >NZ_SESJ01000027.1 Meiothermus sp. PNK-Is4 contig_00027, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================= ================== 43203 36 100.0 34 .................................... TCATGAGCTGCTACCGCAAACCAAAGCGCAAGTG 43133 36 100.0 37 .................................... AGCTTGTGCAGCCAGTCCTGCCGCTGGTTGCGGACCT 43060 36 100.0 36 .................................... AGGGTTTCCCGGATGGCCTCGCGCTGCATGGCGGGG 42988 36 100.0 37 .................................... TGAGTTCTGATCCAATCCGGCAAATCCTATTGGCTGT 42915 36 100.0 39 .................................... ACCAGAGACGTTAGATTCGACCTCATGGACCCCGGTCGG 42840 36 100.0 37 .................................... CGGGGAGATGGTCCGCGTTTACCGCATCGAGCACTGG 42767 36 100.0 32 .................................... GTCCCGCCATTCTCTTCAGCGGCCCTGAGGAG 42699 36 100.0 36 .................................... GCCATGGCTCAGCAAAAAGTGACGGCTGAGAAAACC 42627 36 100.0 38 .................................... GCGGGATCAGACCTGAGCGCATACTTCGACCCGCAAAC 42553 36 100.0 39 .................................... TACATGGCAAATGGCTAAATCGGGAATTCCGCCGTTCAG 42478 36 100.0 34 .................................... GCGGTTGCGGGCGTGGCGCTGATTGCCGGGGCCA 42408 36 100.0 33 .................................... GGGGAAGCTCTAGCCGAGTACGGCATCGGCAAA 42339 36 100.0 38 .................................... AGGGTTTCCCGGATGGCCTCGCGCTGCATGGCGGGGAT 42265 36 100.0 35 .................................... GCTAACACGGCTTGCTCGGCCAGCTTGGGCACGCG 42194 36 100.0 34 .................................... CCGCTGCTTTTTGAGGTACCGCGCCCCGGCTAGC 42124 36 100.0 39 .................................... ATCGCCAAAATAGTTATCACCACCGGCACCCAGAACGCG 42049 36 100.0 29 .................................... GCGACGCCAAATACGCCGCGCAACTGATC 41984 36 100.0 35 .................................... GTTAGCCAAATCCAGCGCCTAGACGTGCCTTCCCG 41913 36 100.0 37 .................................... CTTTCGTGGGTTCGGGGGCGGGGGCGGCTTCCATGTT 41840 36 100.0 34 .................................... AGGGAGTTGCAGGTGTGGGATTGGGGCCAATGGT 41770 36 100.0 38 .................................... GCGTTCGATGCGCCGTCCACCGTTTTGAGCGCGCGCTG 41696 36 100.0 37 .................................... CTAGCACCCCAGCCTGTGCCGTGCTAAGCGTCACATC 41623 36 100.0 35 .................................... TCAGCATATTTGACCTGATGCACGAGGAAACCCGC 41552 36 100.0 36 .................................... CCTTCTACGCCGAAGGGATTACCGGAGACGTAGAGG 41480 36 100.0 36 .................................... ATCTACGTGCGGCAGTGGGACCCCCTGGGGAGCCAG 41408 36 100.0 36 .................................... GCTTTCTCTTTTTCTTTGAAGTACGACGTTCGTCCA 41336 36 100.0 34 .................................... GTCAACCGCGCCTGGGAGAACTGGGACGGGGAAG 41266 36 100.0 35 .................................... GTCGCTTCGGGCGCGTCGTCGTGGCTACCACCCCG 41195 36 100.0 38 .................................... ACGTTCTACGGTGCTATGGCCCTCTGGCGCGTCATCAC 41121 36 100.0 35 .................................... AGCTTGGGGACACTCTTTGCGAATAGCACTCAGTG 41050 36 100.0 34 .................................... ACGTAGTCCCGCCAGGCCCCGTCCTTGGGGGCCG 40980 36 100.0 37 .................................... TCGAAACTATTGTCTTCCTGGAAGCCCGATACGTTGA 40907 36 100.0 36 .................................... ATGCTGCCCCCCTCCCCTCACAGCGGCCGCAGGGTT 40835 36 100.0 37 .................................... CAAATCCTTTACCCCGTACTCCGGTGGCAGTCCGTCG 40762 36 100.0 38 .................................... ACTACCGATGGGCGGGGTAGGCAATGGGATTTCCGTGA 40688 36 100.0 37 .................................... GATACACCGGGCATCGGGTCTCCCTGGCCCGGTCAGT 40615 36 100.0 35 .................................... AAGCCCAAACAGCGCGGCCCCAAGCTGAAGGTGCA 40544 36 100.0 37 .................................... GAATCCGAACCCTACGGTGAGGCCATCGAGTACCCGC 40471 36 100.0 37 .................................... CTGCCGAAGTGGTCTCGTGTGTTCAGGTTGGCCCCCG 40398 36 97.2 0 ...........T........................ | ========== ====== ====== ====== ==================================== ======================================= ================== 40 36 99.9 36 GTTGCAAAGTTCGTTAGCCTCGTAGAGGATTGAAAC # Left flank : CTGTGGGGTGGGGGCCAGATGCAGCCGCCGCACCTCATACCGATTTGATGACGGCAAGCGGTGCACCCCCTACGACGACGCTGCGGTTGGATTGAAACTGTCGGCCCACGGAACCATTGTACCTATTTACCTGGAATCGGCCGCCTTATCCCCAGGGCTGAAGCCTGGGGCTTGTGGCGGCCGAGTTTTGGTCAGCCGTAGGTAGAACCTGGCGCATCGGACACCAGGGGTTGAAGCGCCTCGAGGAGCCCGACTTCGTCTAGCGAGCGCGAAGGTCACCTTATGCACACCCCCGGTGCCAAACCGGGGGTTTTCCTCGTGCAGGAGGGCGCCCCTCGAGGTTGCATACCCTTCCTTTACCCTTGTTCGCGTGCGCACCCGTCCAGGTGCAGGAAAATTCCCTTTGACCTCTGCTCTTCTCCCTCAGCTTGACGCATATTTCCCCCGCGTGCGAAAATGACCCCAAGAGCCCCCACCTGGAGCTGCTTCCTAGAGGGAGA # Right flank : TTGGCAACGCCCCGCAATCCTGGGAGTGGAGCCCGAACCCCCGGGACTACCACCCCGAGCTTTGGGGGGCCTACGTGGCCGCTCTGCCCCGGCTCAGCCCCGAGGGCCGGGAGCGCCTCATGCGGATTGCCCGGGGCGAGGCGGACCCCGACCCTGTGGACTGGCTCTGGGCCGCGGGCGCCATGCACGCGCCCTTCAACCGGCGGGAGCGGGTGGTACCCGCGGAGGACCGCCTTTGGATGGGGAAGGACCGGGCCACCTCCTTGGAGTGGCACCTGAGGAAGCGCCAGCGGGAGGGCGACCTGGCCCCGGGAGTCGGCCCGGACGACTACGAGCGCCTGTGCCGGGAGGTCGCCCTGAACCCCGGGGCGGCCCTTTTCGCCTATACCCGGGTCCAGGGGCCGGTTCTGGCCGCTCTGGTGCCCACGGAGTGGGCCGTGCCTGAGGAGTGGCGTGGGCCTAAGATAGGGCGCTACTGGTTGGTGGTATACTCCTTCTGG # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAAAGTTCGTTAGCCTCGTAGAGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-2.90,-3.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [30.0-36.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : NA // Array 1 4294-3397 **** Predicted by CRISPRDetect 2.4 *** >NZ_SESJ01000028.1 Meiothermus sp. PNK-Is4 contig_00028, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================== ================== 4293 37 100.0 36 ..................................... ATCATCTCGAGTGGCCATCATCTTGAGCGCCATCAT 4220 37 100.0 35 ..................................... CCTGTCCACCTCGGGCTCGTATACGCTAGCTAGCT 4148 37 100.0 35 ..................................... CAGGGTCCATTTTTGTGGACTTACAAAAACGGGTG 4076 37 100.0 35 ..................................... AAACGCCCGAGCGGCATCAACGCCGCAGCGATCGA 4004 37 100.0 36 ..................................... CTGGGCAATCAGGAAGAACGACGGGCGGGCAATCAT 3931 37 100.0 36 ..................................... GTGACCCTTGAGCAGCTGCGTCGGCGCTTGGGGCAG 3858 37 100.0 35 ..................................... TTTTTGTTTGAACCAAGTACACGCCAAACGCAATA 3786 37 100.0 35 ..................................... TCTGGGTAGGCTGGGGTCATCCCAGCCTCTAACTT 3714 37 100.0 32 ..................................... ATGGCTACTCAAAATGATGGCCTTTCATCATG 3645 37 100.0 37 ..................................... CTACCCTAAGGATACCTGGGGCAAGCCCCTAGGGAGA 3571 37 100.0 40 ..................................... TCACGTGGAACGTGGGCCCGAGGCTGGGGGCTTGACGCGC 3494 37 100.0 24 ..................................... GCCCCTTGGCCCCCCTTGACATTC Deletion [3434] 3433 37 86.5 0 ...A........................A.C....CG | ========== ====== ====== ====== ===================================== ======================================== ================== 13 37 99.0 35 GTCGCACTCGGGCGAAAGCTCGAGTGAGGATTGAAAC # Left flank : TGTAGGAAGGTAGGCATGGAACGGCTAGATATTCTGGTTACCTACGATGTGAACGTGACCTCTGAAGAGGGCCAGGCCCGGCTGGCCCGCGTGGCCAAGGTATGCAAGAACTTCGGCCAGCGGGTACAGATGTCGGTGTTTGAGTGCCGGGTGACACGGGCCCAGCTCGAGGATATGGAAGCCAAGCTCCTGAAGATCATCGAACCGGACAAGGACAGCCTGCGCATCTACACCCTGCCCGGAGGCCGGGAAAAGTGCTTGCGGGTTCACGGCCAGGACAGGTACACCGACTTCGACGATCCTTTGGTAGTCTGAAGTTGCGCGAACCCCAAGCAAGCACCAAAACCCGGGGGGGTTCGCGCAAGCCGAGAAATCGGCTAGGGGACATTGAAAACCCGTTTTCCCCTCACCTTCCCCCACCCTGCGTCGGAACCCTTTTTAGGGGGGTTCGCGCAAACGGCCTCTTGAGCGCCGTCCAGCACGCGCGCTAGAATGGGCCT # Right flank : AGCCCTATGTGGACGCTAAAGATCCTCGGTAGTTGCGCCTTGGTCAGCCCGACCAAGACCTTAAACCTCGAGCGCAAACCCGCGGCCCTGCTAGCCTATCTGGCCCTCGAGGGCCCCACTCCCCGTGCGCGCTTGGCTGAGCTGCTGTGGCCGGATCTGGAGGAGAAATCCCAGCGCAACAACCTGCGCCAGGTGCTGTTCCGCCTGCGGCGGGCGGCGGGGTTGTTCTGGGGGAGTGACCCGCTAGAGCTAGACATGGCTGTGGACGTGCTGGAGTTCACTACCGGGCTACGGTCGCGCCGGCCCCTCCCGGATCAAGGCTGGCTTGAGGGAACCCTCCTCGGCGGCTTCGAGTACGACGACTGCCCAGAATTCGCCGAGTGGTTGCAGGTGGAGCGCGAGCGGCTGCTGAACTTGCGGCTCGAGGCGCTGGAGGCCGAGGCTGAGCGGCTCGAGCGCGAGGGGCATCTTTCCCGGGCGCTTGCCTATGCTCGGCGGCT # Questionable array : NO Score: 9.17 # Score Detail : 1:0, 2:3, 3:3, 4:0.95, 5:0, 6:0.25, 7:-0.03, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCGGGCGAAAGCTCGAGTGAGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: R [6,10] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-8.10,-13.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [41.7-31.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.65 Confidence: HIGH] # Array family : NA // Array 1 64398-64143 **** Predicted by CRISPRDetect 2.4 *** >NZ_SESJ01000006.1 Meiothermus sp. PNK-Is4 contig_00006, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= =============================================== ================== 64397 29 100.0 46 ............................. TGCAACTCCCTGTCACCCGCCTCCTCTGCTTCCTCGAGCTTGAGGA 64322 29 100.0 46 ............................. TGCAACTGAACAAACTCTTTTTTGCACTTGCTGCACTTGATCACCA 64247 29 100.0 47 ............................. TGCAACAAAATAAATATTGTTCAGCAAAAAAACGCGGAGTAAAAACA 64171 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= =============================================== ================== 4 29 100.0 47 GTCGCAAACAAAAAGCCCCGTAAGGGGAT # Left flank : AGCTTTTGCAGAAGAGGCTCGAGCCCACCGAGGACGGCGTGCGCATCTACCCCGTAGGCGGAGCGGTAGAGGTGCTGGGTGTGGGCCGAATCTCCGAAAACCCCGACTACCTGATCCTTAAAACGTGTTTGCCCTACGGGCAAAGCAACTAGCCCGCAAAAAATCCCTGCGCGATCGCACCCCCTCGCCGGAGAAAGCGACCACCATCCCCGTCTGGAAGGGCACAAAGCCCGCTTCTCAAAACCCGGCGTTATGTTTTGCGCAAAATGCTATAATGTTCCTAGCGGGGCCACCCGCAGCGCACCTTGAAAGCCAGTTTTTCCCTTCTCCATCGCAAATCCCTGCGACACAAAATCTAAATGTGCAGGGAAGTAAGCACCCATCGGCACAAACCCCGCTTTTCACCCCACTTATCCACAGGGAGGCGGTGGATAACTCCACTTTCTCATAAATCTACCCTCCGGCACCCCTGTACAGAACGGGGTTTTATGGGGTATGCT # Right flank : GCAACGCTCTCGAGGAGCAGTGCTGAAAGCGGTTGTGATAGCCTATAAGCATGCGAAGCGTAACCCTTCCGAACAGCGTCGCCGAGGCCCTAGAGCGCTTCAAGAAGGAACGCGGTCGCGGCTGGTCGCGGGAACTGATCAGCCTTCTTCGGGCGGAACTCGAGCGCGAACAGGCACGCCAAGAGTTGGGCTCGCTCCTGCGTGAAATTCGCGCTCAAAGCGGGCTGAGCGAACGAGAGGTCTACCAGAAACTTCGATGAGGCTCGTCCTCGATACAAACGTCCTGGTGGCGGGGACCTTGACCCAAGGCCCCGCCGCTAAGGTGTTGGACCTCTGGATCGAAGGCCGTTTTGACCTGCTCACCTCCGAAGCTCAACTGGCTGAACTCAAACGGATCTTGCAAACTAAGTTCAAAGCCCACATCTCGCCCGTCCGCCGCGCCCAACTGTTGGGCGCGGCTGCGCAAAGCCGCGATCCTGATCCAGCCCAAACATCGCCCC # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCAAACAAAAAGCCCCGTAAGGGGAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,11] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.10,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [45.0-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.37 Confidence: MEDIUM] # Array family : NA // Array 1 4958-3697 **** Predicted by CRISPRDetect 2.4 *** >NZ_SESJ01000064.1 Meiothermus sp. PNK-Is4 contig_00064, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================= ================== 4957 36 100.0 36 .................................... TCCCTACAACCGCAAGAGATGCACTGGCAGATATTA 4885 36 100.0 35 .................................... CATGCCTGGGCGGGGCGCACCCGGCCCCCTGATGG 4814 36 100.0 34 .................................... ATCCTTGGGAAAATCTTTAGCCAGCACCGGCTCG 4744 36 100.0 36 .................................... GCCAATTTTGAGTTTTCCCTGCCGCAAGAGTTTGCG 4672 36 100.0 36 .................................... TTGTCACCAAAACTTTTTGACTGCTACCTGGGAATG 4600 36 100.0 39 .................................... TTAGGCACGCTGCTCATCAACAATACGCTAATCGAGGAT 4525 36 100.0 34 .................................... TTACAACACACCCCTCGATACGCCCTATGTTTGG 4455 36 100.0 37 .................................... ATCCTAGACGGGAATGGGCGGGTGAACGACCTCGCCC 4382 36 100.0 36 .................................... TCGCCATCTGGTCATCGTCAACCGCAAGCGCGAGTT 4310 36 100.0 37 .................................... GGGCTCATGCTGTCCCCCTCGACTTGATACAGCAGGC 4237 36 100.0 37 .................................... CGACCGGGCGACCTCGAGGAATGCCGCCGCCTGCTCC 4164 36 100.0 35 .................................... TGGACTGACCGCGCACCCAACTACCTGCACATCTA 4093 36 100.0 36 .................................... CTCCTACGGGTCCCAGCGGGTGGGACCTTACATCCT 4021 36 100.0 36 .................................... GCTCTCCGGACCCGCTTCCGGTGGGCAGGCTCACCG 3949 36 100.0 35 .................................... CCAGATCGAGCAGATCGTGCTCGGTGGCGTACTGC 3878 36 100.0 35 .................................... AACCCCCCAGCTACAGTAAATGGACCATCGTTGCG 3807 36 100.0 39 .................................... CCGTTCTCGAGGAGGCCACTCGAAACCCGCACCCCCCTA 3732 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ======================================= ================== 18 36 100.0 36 GTTGCAAAGTTCGTTAGCCTCGTAGAGGATTGAAAC # Left flank : TCGCCTACGACACCCCGGACGACCGCCGCCGGGCCCAACTCGCCAAGCTGCTCAAGGGCTTTGGCGAAAGGCGGCAGTACTCGGTCTTCGAGGCCCGGCTCACCCGCGAGCAGTGGGCCCACCTCAAGGGCAGGCTCGAGGTCTTGGTGGACAAGAAAGAGGACATTCTCGCGGTCTACTTCCTTCCCCCCGAGGCCGTAGGTAGAACCTGGCGCATCGGCCACCAGGGGTTGAAGCGCCTCGAGGAGCCCGACTTCGTCTAGCGAGCGCGAAGGTCACCTTATGCACACCCCCGGTGCCAAACTGGGGGTTTTCCTCGTGCAGGAGGTCACCCCTCGAGGTTGCATACCCTTCCTTTACCCTTGTTCGCGTGCGCACCCGTCCAGGTGCAGGAAAATTCCCTTTGACCTCTGCTCTTCTCCCTCAGCTTGACGCATATTTCCCCCGCGTGCGAAAATGACCCCAAGAGCCCCCACCTGGAGCTGCTTCCTAGAGGGAGA # Right flank : CTTTTTTGCCTAGCGCAGCAGGCGAGGGTCTAGTGGGTCAACGGGCCAGGCAGCGGACCGCCCGGAGCGTCCTGGGGGCTCGGGAGAGGTCTACCTCGAGGCAGCTCCGGTCTAACCGAAAACGGGGCTCTTCCCCGTAGCGCTTCGCCAGCGCCCGGAAGTAGTCCTGGCTGAAGCGCAGGAAGGCGGTGGCAGCCTCGCCCCGCAGGCCGGGGGGCGGGTAGAGCCGGAAGCCGTTATCCCGGTAGCGGATATGGGGCTTCATGATCTGATAGTAGCAGAATATGCGTGGGGGTGGGGATTTCTTGCCCCCCTGGGCGAGATAGGAAGAGCAGCAAGGGGGCAAGAACCAGGGGGCCTTGCGGCCCCGTGCGGGCAGGCAAGGAGGTCAGGATGACCCGCGAAATCGAGACACGGCGTCGGCTGGCGATCTCTCTCGGCGAGCGGAAGTACATCTCGCTCCACCCCTCCACCGTTCGCTTCCTCAAAAAGGCGGCCCA # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAAAGTTCGTTAGCCTCGTAGAGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-2.90,-3.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [35.0-36.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.87 Confidence: HIGH] # Array family : NA // Array 1 51525-53002 **** Predicted by CRISPRDetect 2.4 *** >NZ_SESJ01000008.1 Meiothermus sp. PNK-Is4 contig_00008, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 51525 37 100.0 35 ..................................... CTGCCGTGGTCAGATTAGCCGATAGCCCGGCTATC 51597 37 100.0 38 ..................................... TCTGCCCGAAGGGGTGGAGACGCTGCCCGAGACGGCTA 51672 37 100.0 35 ..................................... TGGTAAAGTTGTAGCGGAAGCATTCATTAATTATT 51744 37 100.0 34 ..................................... AGAAGAATTTTGTTCATTCCTATACTGATTTTTC 51815 37 100.0 36 ..................................... GAGGGCCAAGGCCTGGAGCTGGGCGTCGGTCATGAT 51888 37 100.0 35 ..................................... ATCCCCAAATCTCGGGGATTTTTCAATAGGAATAA 51960 37 100.0 31 ..................................... CACGACTTCCCCAACGGCTGCCGCTCCGTGC 52028 37 100.0 35 ..................................... CAGTTCGATTTTCATCTTTTCACCTCCGCCCTCAT 52100 37 100.0 35 ..................................... CTAAGTTTTTTTCCTATGCCCTTCGTTATTGCGAC 52172 37 100.0 35 ..................................... AAACCCACAAAGCTAACCCCCAGGTCTGCACCTGG 52244 37 100.0 35 ..................................... ACCAAGGCTTGAATGGCTTCAGGAACTTCTAACTC 52316 37 100.0 35 ..................................... GGGAACTCCCGCCTCATCCGCCCGCGCTTCGTCGA 52388 37 100.0 35 ..................................... CACAGGTGGAACAAAATGCCCCCCATAGCTAGCAG 52460 37 100.0 35 ..................................... GGGATAAGGGGCTGGGCTACTGCACCGGGCCCTCG 52532 37 100.0 35 ..................................... CCGGTCACCCACGAAAACCCTATCAGCCGGAACTT 52604 37 100.0 34 ..................................... CACGACCTTCTGCCAAGTTGCTTTATCGAACGTG 52675 37 100.0 36 ..................................... AGGTAAAGCTTCCCTGAACTCACGAAAGCGCATCGC 52748 37 100.0 35 ..................................... CCCGGCGGCGGCTCGCCCATGGCTAGGATGATGGC 52820 37 100.0 35 ..................................... AAGTGGCCATCAGCATGAATGGCCATCAGCTCGAA 52892 37 97.3 37 .................A................... GGAACGACAACAGGCCGATCATCGTCGGCGCCCTCAG 52966 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ====================================== ================== 21 37 99.9 35 GTCGCACTCGGGCGAAAGCTCGAGTGAGGATTGAAAC # Left flank : GGCCCGAGGTGCCGGGCGGCGAACTCATCAGCGAGGCCACCCCGCTAGGGGCCTTGCAGATCACCCCCCAGGGCCAGCCCATCGTTTTGCTCAACGACCGGGGGCGCCTCGGCGGCTACGCCAAACCGGCGCTGGTTCATCCAGCCGATCTGCCCCAACTGGCCCAGTTGCGCCCGGGGCAGCGGGTGTGGTTCGTGGAGGGCCTCGAGCCCCAGCACAGGGCCGAGCTATCGGCTTCACAAGTCGGTGTATGACGAGCTAGAGATGAAACGATCAAATCGCTCTGCGTTTCCCGGAGTTCCTTTGGTAGTCTGAAGTTGCGCGAACCCCAAGCAAGCACCAAAACCCGGGGGGGTTCGCGCAAGCCGAGAAATCGGCTAGGGGACATTGAAAACCCGTTTTCCCCTCACCTTCCCCCACCCTGCGTCGGAACCCTTTTTAGGGGGGTTCGCGCAAACGGCCCCTTGAGCGCCGTCCAGCACGCGCGCTAGAATGGGCCT # Right flank : CAGCCGGGAGGAAGGGGAGAGGCGCGCCTGGAAGGCTCCTCCCGAGCACGCCCCCCAGGAGGGCTTCGGCCGCGCCCCCACCCGGCAGGAGTGGAGCCCGGACCCCCGGGACTACCACCCCGAGCTTTGGTGGGCCTACATCCAGGCCCTGGGCCGGGGGATGCCCGGGGCCGACGCCCACCTGGCCGCCATCGCCCGGGGGGAGCGCCCTCCCCAGGCCACGGACTGGATGCTGGCCGCCGGGCGGGTGGCGGTGGCCGCTTTCTCCCGCCGCCCCCGCCCCCTCTCCCCCGGGGACCGGCAGCTCCTGGGGGCCAACCTCGAGGCCCACTGGCGAAAGCGCCTTTTGGAGCGCCAGCTCGCGGGCGTTTCCGCCGACGAATACGAGGCCGTGGCCCGCCGGGCCGCCTTGGACCCCGAGGTGGGCGTGGTGGCCTACAGGGGGCCGCGGGGCCCGGTGGTGGCCCTCCTCTCCCGCACCGAGGCCGTGGTGCCGGAGG # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCGGGCGAAAGCTCGAGTGAGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: F [10,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-13.10,-8.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [30.0-25.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : NA //