Array 1 273453-274062 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_MJRY01000014.1 Listeria monocytogenes strain BCW_4782 PROKKA_contig000014, whole genome shotgun sequence		Array_Orientation: Forward

  Position	Repeat	   %id	Spacer	Repeat_Sequence              	Spacer_Sequence                      	Insertion/Deletion
==========	======	======	======	=============================	=====================================	==================
    273453	    29	 100.0	    35	.............................	ACAGATCAAACTCCGGAAGGGTGATTGTAAATGGC  	
    273517	    29	 100.0	    36	.............................	TGCTCTCTTTTGTGTAAAGCACATCAAGCATGTAGC 	
    273582	    29	 100.0	    35	.............................	GCGATTTTTGTCAAAGGGACAGCGATGGGTTACAA  	
    273646	    29	 100.0	    34	.............................	TTTTCTACTCCTGCTTCTAAAATGTCGTTTATAA   	
    273709	    29	 100.0	    35	.............................	CTAAAACATCCTTCACTGTATCAACTCCTTTCTAT  	
    273773	    29	  96.6	    36	A............................	AAAATAGGAGGAAATAAATTATGACTATCAAATTAA 	
    273838	    29	 100.0	    35	.............................	TTTGTTGAATCAACGGATATAGATTTTACAATTTC  	
    273902	    29	 100.0	    37	.............................	TTGGTTCCTTTGGAAAACAACAATAGCGTGTAGTATT	
    273968	    29	  75.9	    36	......T.C.A.C...CA...T.......	GCAGAAGCAGCAAAATAACCAAAAGTAATGACTTTC 	G [273991]
    274034	    29	  79.3	     0	......A..T....AGA......A.....	|                                    	
==========	======	======	======	=============================	=====================================	==================
        10	    29	  95.2	    36	GTTTTAGTTACTTATTGTGAAATGTAAAT	                                     	       

# Left flank :   GCGTCCGTGCCACCACTTCAGCTGATATTTTACTTGAAAAAGGTGCCGTAGAAGTTATCGCTTGCGCAACCCACTCCGTTATGGCTGGAAACGCAACCGAACGCTTACAAAACTCCAATATCAAAGAAGTCATCACATCCGACTCCATCGATCTTCCAGAAGACAAGCAATTCGACAAACTAACAACCATCTCCATCGGACGAATCTTAGGCCGCGCAATCGAAGGCGTACAAGAAAACCGCTCGTTGCATCCGTTGTTTTAAAGAATAAGCAGAAAACAGTAACTTAGTAGAGTTGCTGTTTTTTTGTTATCTGTCGACCTCGAGTAGCGTGAAAAATACCGGGGATCGACAGAAAGTTGTAAGTGGTTGGGGTGGAAGAAGTTTGGCGGTATTTGCTTGGGGAAATCTTCCGGATAAGAGGAGATTTTAGATGTTTCTTTGTAGGTCGACAGAAATAGCTCTTTGAGGTAAGATGGGAGTAAGAAGAAAAGTTAGTGG
# Right flank :  TGAAAACCTGTTATACATAGGATTATCTATTTCCGTTATAATTATTCCTTGCAAATAAATTCCAAAAAACAAACCCCTCATTAATTGGGTTTGTTTTTTTGTGAATAATTATAGTCAAACGAGCAATCTGTTAACAATTTAGCAATAAACGCAATAAAAAGCCGTTTTTTCACTATGGATTGTACTATAAAACATAATCTACCTATGCTAAAATTTAAGGGAAGGTAAGCTGAATAATACATATAAGGAGGACTCTACTATTGAAAAAGATTCTAGTGCCCATATTATTGTTAGCAACAATCTTAGCAAGCTGTTCCTCGCCGAATGAAAAAATAACCAAAGACACTAAAATATCCAAGACTAATACAATAAGAGCAGATTACAAAGTTCCAAAAGATATTAAAGAACTTGAGGATGATAGTGCTAATATTGTTAAAGTAAAATTTCTTCAAAATAAAACGATAGGCAAGGATGGTAGTACTATCAGCGAGATAGAAATT

# Questionable array : NO	 Score: 6.02
# 	Score Detail : 1:0, 2:3, 3:0, 4:0.76, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GTTTTAGTTACTTATTGTGAAATGTAAAT
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     NA [Repeat is AT rich:79.31%AT]
# 	Reference repeat match prediction:         F [matched GTTTTAGTTACTTATTGTGAAATGTAAAT with 100% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  F [-1.20,0.00] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      F [0-15] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: R [60.0-75.0]%AT Score: 0.27/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         F [5.28,0.27   Confidence: HIGH] 

# Array family : II-A [Matched known repeat from this family],   
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