Array 1 7599-6229 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXHF01000063.1 Salmonella enterica subsp. enterica serovar Saintpaul strain BCW_2106 NODE_63_length_24090_cov_1.9043, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 7598 29 100.0 32 ............................. CAACAGCGTCCCGTATTCTGTATCGTTGACGG 7537 29 100.0 32 ............................. CGCATTACTACCGGGATTAGTACCTATCAAAA 7476 29 100.0 32 ............................. GCAGACGCTGCCGTCCCCCCGCTCGACGCTGA 7415 29 100.0 32 ............................. CAGCGGGAAAACGTCCAAGTGCCCATATCCCC 7354 29 100.0 32 ............................. CCTTCAGAACATGCGCGGTATTATTTTTGACC 7293 29 100.0 32 ............................. CCGTGGAAAGAACCAGAACGCTGGATATTGGT 7232 29 100.0 32 ............................. ACCACATCAATGACCACATCACGCAGATATTA 7171 29 100.0 32 ............................. CGCCGTGTTTACTTCAATAGCGACGTTGTGAG 7110 29 100.0 32 ............................. AGGTTGACCATCGTCAGCTTCATAAAGATTTA 7049 29 100.0 32 ............................. GGCGTTATTGAGTGGGAAAAAATCGTAAGCGC 6988 29 100.0 32 ............................. ACGCTCTATAGCCATTAGGTGCGCCACCACTT 6927 29 100.0 32 ............................. CAGCTCTCTAACGACTTCCCCGGAGTACGTAA 6866 29 100.0 32 ............................. CTTGTCGGCGTTGCTCACGTGACTATTTCGCA 6805 29 100.0 32 ............................. CGATAATTTATAAATTTTCGTCCACTCATCAA 6744 29 100.0 32 ............................. ACCGTTATCTGCTGGTTGATACTTCCCCGAGC 6683 29 100.0 32 ............................. CCGCAGAACGCCGCATCGCCGAACTGGACAAA 6622 29 100.0 32 ............................. TGCCGGTTTATCTGCTCCGGACCAATCGACTA 6561 29 96.6 32 ...................A......... CGCCGCCAGCTGGAAAAATGCCGCCTGTTAAT 6500 29 100.0 32 ............................. CTCCAGCCGACGCATTCGCTTGATCGCTTTAT 6439 29 100.0 32 ............................. GGGCTGGACCTCGATTTATTTAATACGTTTAT 6378 29 100.0 32 ............................. TCCCAACTCGTCAGGGCGGTTATCCAGCGCCA 6317 29 100.0 32 ............................. GTCACGAGGTCTGACGCGGATGTGATGAGTTA 6256 28 93.1 0 ........................G-... | ========== ====== ====== ====== ============================= ================================ ================== 23 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATTAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCGCGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATGACATACGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 5722-5020 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXHF01000086.1 Salmonella enterica subsp. enterica serovar Saintpaul strain BCW_2106 NODE_86_length_15843_cov_1.87986, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 5721 29 100.0 33 ............................. TTGAGCACGACGAAATTTGGGTTTGATGCAGCC 5659 29 100.0 32 ............................. GTTATTCAGTTTATTAAATTTTTCCGCCAAGT 5598 29 100.0 32 ............................. CAACTGTATTTTGCGTTATTACGCTGAACCAG 5537 29 100.0 32 ............................. CCGAGGTCGGAGCGGATTGACTTAAACGGCAA 5476 29 100.0 32 ............................. TGCAACAGCAACAGGAGAGAATGCGGCAGCGT 5415 29 100.0 32 ............................. CGTCAGTTGCTGGAACTGGGGCACGATCTGGT 5354 29 100.0 32 ............................. GAGCGGCTAAACGATGAATTAACCAGGGAGCG 5293 29 100.0 32 ............................. TAAGTTACGCCAGTGCGGGCGTGTTGCTCATC 5232 29 100.0 32 ............................. GAGACGCCAGATGAATTCTGCGGGACAAGAGA 5171 29 100.0 32 ............................. CGTGGCTGGAGCAATGAACAGATTAAAGGGGT 5110 29 100.0 32 ............................. TCGCACAACGCCTGGATATCCGCCCATCGGCC 5049 29 96.6 0 ............T................ | A [5022] ========== ====== ====== ====== ============================= ================================= ================== 12 29 99.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCACTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //