Array 1 229-685 **** Predicted by CRISPRDetect 2.4 *** >NZ_BLIU01000011.1 Streptococcus canis strain FU129 ScFU129_contig11, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================================= ================== 229 36 100.0 30 .................................... TCAGACGCTCAAATGCTATCAGATTTGATA 295 36 100.0 55 .................................... TCCAGACCCCAACGACTGGTTAAACCGCCTGATCAAGGTATATGCTAAACGTTTC 386 36 100.0 30 .................................... GTTAAATCCTCCTTTGACGGCAATTTACCG 452 36 100.0 30 .................................... CATGTTACGACACTTTGTCTCATTAAACGT 518 36 100.0 30 .................................... GTAAAGTGAGGTCATCACTCCATTTTTCCA 584 36 100.0 30 .................................... GTAAAGTGAGGTCATCACTCCATTTTTCCA 650 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ======================================================= ================== 7 36 100.0 34 GTTTTAGAGCTATGTTGTTTTGAATGGTCCCAAAAC # Left flank : GTTTTGAATGGTCCCAAAACAATGAAACGCTAATTCGTTTCAAAATCCCTGTTTTAGAGCTATGTTGTTTTGAATGGTCCCAAAACTCGTGCCTCTGCCCAGCCCCGCGGTCCACCGTTTTAGAGCTATGTTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTGAATGGTCCCAAAACTAATATATAACTTGGCTAACGACATGGTCTG # Right flank : CAGATAATACCGCTTGTTGTTGATCTTCGCTTCTTTCTATTAAAATGTTTTCATGTTATAATAGTTAAAAGGAGGAAGAAAGTGGAGCGATGGAACAAACATTTTTTATGATTAAGCCTGATGGGGTGAAACGAGGGTTAGTTGGGGAGATTTTGCGACGTATTGAGCGGCGAGGGTTTACATTTGAACGCTTGGAGTTGCGGCAAGCTAGCTCGGAACTCTTGGTTAAGCATTATGAGGCCTTGGTTGCGAAGCCATTTTATCCTCAGTTGGAAGCTTACATGACCAGTGGCCCTGTTTTAATTGGGGTACTTTCTGGGAATCGGGTGGTTTCGTCTTGGCGAACCATGATGGGGGTAACTAATCCCAAAGATGCTCTTCCTGGCACTATTCGAGGTGATTTTGCTCAGGCTCCTGGTGATGATGGTGGCATTTTTAACGTGGTTCATGGGTCTGATTCTCTAGATTCTGCTAAGCGTGAGATTGCCCTTTGGTTTAAC # Questionable array : NO Score: 6.12 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:-0.13, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTATGTTGTTTTGAATGGTCCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.89%AT] # Reference repeat match prediction: F [matched GTTTTAGAGCTATGTTGTTTTGAATGGTCCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-2.00,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [51.7-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.27 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], // Array 1 188463-185977 **** Predicted by CRISPRDetect 2.4 *** >NZ_BLIU01000019.1 Streptococcus canis strain FU129 ScFU129_contig19, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ===================================== ================== 188462 32 100.0 35 ................................ GATAATAAATGGTTTTACTTTATTGGTTGGGTCAT 188395 32 100.0 34 ................................ AATAAAACTCATAGGTGAAACCCTAGCTGGTTTA 188329 32 100.0 34 ................................ ACGAATTTACAAGAAGATGTGCCAAACACATTTT 188263 32 100.0 35 ................................ GGTTAATTCCTGTTAAATCAGGTATTGAAAGGCGG 188196 32 100.0 33 ................................ AATAATATTGGTGGTTCTGCTAATTGGAATGCT 188131 32 100.0 36 ................................ GATTCCTTCGGCGCAGTAACTAGCAAACTTAGCAAA 188063 32 100.0 33 ................................ CCTGTTTCAGCAACATATCGAGCATGCCAATTA 187998 32 100.0 35 ................................ CCAGATGAAGCCTTTAACCGAGCAGCAGGGGTCAA 187931 32 100.0 34 ................................ TATGACTTTGACAAGCTAACGACTGGGCTTCATG 187865 32 100.0 35 ................................ TTGTACCCATTTTAACAGAAATTGAGGTATAAAAC 187798 32 100.0 37 ................................ AATAGAGAAAAAACTATACGAGTACAAAGTTTATGAG 187729 32 100.0 34 ................................ CAATCAACAGCACCGCTTTTAACTTGATTAATCG 187663 32 100.0 33 ................................ GTTAAGCGTCTCTCTAGCAACTTTATCCCATTT 187598 32 100.0 36 ................................ CCTGATGAACTCGGTAATATGTACACCGATATTGAC 187530 32 100.0 34 ................................ GTTCGCTAACTGGACGACCCTGTTTTGTAGCTTG 187464 32 100.0 35 ................................ TTTGATACAAAGTAAAATAGAAGAAAGAAAGATGT 187397 32 100.0 35 ................................ ATGGAAGACTTGCCAAAAAAGGAGCATCAGTTGTT 187330 32 100.0 35 ................................ TCATCTTACTCCTTGATTTGTGACACATTCATCAG 187263 32 100.0 34 ................................ AAAAATATCAGGTTTACATGGATAAAATTCACCA 187197 32 100.0 34 ................................ CACATCAAAACCAACAGATGATGAATTAGAAAGC 187131 32 100.0 34 ................................ ATCTATGATGAAAAATATAAAACGTTGAGCAACA 187065 32 100.0 34 ................................ ACTACTCCGCGCTGGAATATTGTCCATCTTCAAG 186999 32 100.0 35 ................................ CTTTTTCTTTTATTATAAGGAACAGGTTTGAACGG 186932 32 100.0 34 ................................ ATATCAGACCATTGTGGAGACTTAACGAGCGACC 186866 32 100.0 34 ................................ TAGTTGTTTGATTAAATCCTCTGGCATATTTTTC 186800 32 100.0 33 ................................ TTTTTCGGATACCTTTTTGTCGAAGTTGAGGTC 186735 32 100.0 34 ................................ TTTTTGTTCTGTGTCCATTACCTCTATTAGCTTT 186669 32 100.0 34 ................................ ATACGAAAGGTTATCTAATGGTATTAGAAAAATG 186603 32 100.0 35 ................................ AATATAAGTTTGTCCAGTCTGTTTCTCACAGTGTC 186536 32 100.0 34 ................................ CTTAAGCTTGATTATATTATAACTCTGTGTTTCT 186470 32 96.9 34 ........T....................... AAAGAAATAATCATGAGCACGGCTATTGTTTTCT 186404 32 100.0 35 ................................ AACTTGTACGTATAAATCCTTGGCTTCGTTAGTTA 186337 32 100.0 34 ................................ TTCAAACTCTTCGGTTTCTACGTTACTATCTTCT 186271 32 96.9 34 ........T....................... CTGCAACATGCCACGGTTAGTCAACTTGATTTTT 186205 32 100.0 34 ................................ AAGAAAAAATGCGGAACAAGAATTTTGGAATAAA 186139 32 100.0 33 ................................ AACTTCTGCAACTCAGCAACACTTAAGCCATCG 186074 32 100.0 34 ................................ TCCAATGTAAATACCTTTGAGTCGGTTAGCTGGA 186008 32 81.2 0 .....................AC...A..CTC | ========== ====== ====== ====== ================================ ===================================== ================== 38 32 99.3 34 GTCTCACCCTTCATGGGTGAGTGGATTGAAAT # Left flank : AAGGCCATACGAGGAGATTTAGAAAGCTATCCACCTTTTATGGTTTAGGAGATGTTATATGATGGTTTTAGTTACTTATGATGTAAATACTGAGACATCGGCTGGTAGGAAAAGATTACGTCATGTTGCCAAACTCTGTGTGGACTATGGGCAACGTGTTCAAAATTCTGTTTTTGAATGTTCTGTGACACCTGCAGAATTTGTGGATATAAAACACCGCTTAACACAGATTATTGATGGAGAAACTGATAGTATTCGCTTTTATTTATTGGGTAAGAATTGGCAGAGGCGTGTGGAAACACTTGGCCGCTCAGACAGCTATGACCCAGATAAAGGTGTCTTATTATTGTAAAAACGTTTAGTGCGACTCGAGGTTTCACAGAAAAACCTAGCTTGCTCGCGCAAAAATAACTTAAAAAAGAATCGAAATGGAGATAAAAAGGTTTAAAATGCCTCTGTATTCTCCAGCCGTTTCTCTATAAACTGTGTCATTTGGCGCA # Right flank : CTATGTTTTTGGCAGTTCTGTTTTGTGATTTTCTCTGTTCACAAGTTTCCAACTGTTTTGTCTCTACTTTTTCTGTCCTATATGCTATAATATGCCTAAATAACTATGGTAAAGGAGTTAGGATGACTAAGGTTCGGTATGGGATTGTGTCGACAGCGCAGGTGGCCCCTCGTTTTATTGAGGGTGTACGCTTTTCGGGCAATGGCGAGGTTGTGGCGGTGTCTAGTCGGTCACTTGATAAGGCAAAGGCTTTTGCGGCAGCGCATCAGTTACCTAAGGCTTATGGTAGTCTTGATGACATGTTGCTGGATACGTCGATTGATGCTATTTATGTGGCAAGTATCAATCAGGATCATTTTCCTACAGCTAGGAAGGCTTTGCTGGCAGACAAGCATGTTCTCGTGGAAAAACCGTTTACCTTGACAACCGCTCAGGCTGAAGAGCTCTTTGCCTTAGCGCAGGAGCGTGGCTTATTTTTGATGGAAGCTCAGAAGGCTGTC # Questionable array : NO Score: 9.22 # Score Detail : 1:0, 2:3, 3:3, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTCACCCTTCATGGGTGAGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.12%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-4.70,-5.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : NA // Array 1 152-1 **** Predicted by CRISPRDetect 2.4 *** >NZ_BLIU01000023.1 Streptococcus canis strain FU129 ScFU129_contig23, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 151 36 100.0 30 .................................... GGGGCAATGTCAGCTAAAGGTTTGGCTAAG 85 36 100.0 30 .................................... ATAAGGAATTTGAGCAATGGTACAAGAAAA 19 19 52.8 0 ...................----------------- | ========== ====== ====== ====== ==================================== ============================== ================== 3 36 84.3 30 GTTTTAGAGCTATGTTGTTTTGAATGGTCCCAAAAC # Left flank : TTAGCAGCCACAATAACGGAATTGATTGCTTATGAATGCTTAGAAAATGAGTTGGATTTAGAATACGATGAGATCACCATTTTGGAACTGATAAAAGCTCTGGGAGTCAAGGTTGAAACACAAAGTGATACTATCTTTGAAAAGTGTCTTGAAATTTTACAAGTTTTCAAATACCTTTCAAAAAAGAAACTTTTAATTTTTATTAATTGTGGTTCTTACCTTACAAAAGAAGAATTATTGAAGATAAGAGAATATATTGACTTGTCTCAGCAAAGGGTTCTTTTTATAGAACCAAGAAAGTTATACAATATTCCCCAATATATTTTAGATGAAGATTATTTTTTGATAAAAGAACATACAACTTAGACTACATTCGTAAATGTTGATTCTATAGGTTTTTTGGCGTATAATATAGCTATGAAAAGGACTGTTTAAGACTAAAGTCTAGCTAAGACAAATAGTGCGATTACGAAAAATTGTGGACGAAAATAGTCTACGAG # Right flank : T # Questionable array : NO Score: 4.57 # Score Detail : 1:0, 2:3, 3:0, 4:0.21, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTATGTTGTTTTGAATGGTCCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTATGTTGTTTTGAATGGTCCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.91 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], // Array 1 762-131 **** Predicted by CRISPRDetect 2.4 *** >NZ_BLIU01000025.1 Streptococcus canis strain FU129 ScFU129_contig25, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 761 36 100.0 30 .................................... TTGTTCCGTTGCTATATTGCCATACGACTT 695 36 100.0 30 .................................... CAATATTCATGCAAAGGGCTGATGGTACAT 629 36 100.0 30 .................................... TAGCAAACCAGTTGAGAGACTAGCGCTCAA 563 36 100.0 30 .................................... TGTTGGTAGTAAGGGTAGGAGCTAAGCCGT 497 36 100.0 30 .................................... AGAAGCAATTGTCATGAACTCTAAGACATT 431 36 100.0 31 .................................... TTGCTTCTACAGTTACTAACACATTTCGATA 364 36 100.0 30 .................................... TTATCATCAGAAAAAATAGTGAGAACCAAC 298 36 100.0 30 .................................... AGATTGCCAGCAAATTAACCGAGCTTGCTG 232 36 100.0 30 .................................... GGTGTTGGTGCTTTGTTTTTCAATATCTTA 166 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =============================== ================== 10 36 100.0 30 GTTTTAGAGCTATGTTGTTTTGAATGGTCCCAAAAC # Left flank : CACAGCCTGACGACGTCCACAGCGAGCCTTGTTCGCCTTATAGTAATGATAGCACTCAGTTGGCTGAATGCCCTTGTTTGAGGAAAGTCACTACCTTATGAATGGTTTGACGGCTTCGCTTAAGTGATTGCGCAATTTCGAGGACAGAAGTATCTTTCTCAACAGATGCCTCTATCATTACGAGCTCATTTGTGGTAAGATGGGCATGGGTCATTTATGTTACTTCCTTTCAGACAAATGTGGTGTTTATCTGAGCCTAACATAGATGGCTTTTTCTGTCTAATTTAATTTTACAAATTGGGCACATAAAAAATTGTAAGGCGACAGAACAAAGGAGAAAAGAAGGTTTCATGCGTTTGTCGTGCTGGGATAAGAAGGGAAGTTGATTCTATAGGTTTTTTGGTGTATAATGGAGCTATGAAAAGGACTGTTTAAGACTAAAGTCTAGCTAAGACAAATAGTGCGATTACGAAAAATTGTGGACGAAAATAGTCTACGAG # Right flank : CTTGACAAAATCACGGTTACCAATATGTTCGCCAAATTTCAAGTGTAAGTTAGCCAGTCTGTAAAAACTCTTTAGGAGATTTGTAATCAAGTAGTTTCTTTGAGTAGTTATTAATCCCATTTTCAATAAAT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTATGTTGTTTTGAATGGTCCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.89%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTATGTTGTTTTGAATGGTCCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-2.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [61.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.87 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], //