Array 1 39969-42865 **** Predicted by CRISPRDetect 2.4 *** >NZ_MVIW01000025.1 Actinomyces denticolens strain DSM 20671 Scaffold25, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 39969 28 100.0 33 ............................ GGCCCGCGCTATCAGCGCCGAGCTCCGCTCCAA 40030 28 100.0 33 ............................ CGGGCCCCGCGACCTCTCAGTCGTGGGGCCCGT 40091 28 100.0 33 ............................ GACCCTAGGGGCGGATCTGGCGTGGGTAGAGAT 40152 28 100.0 33 ............................ CTGTTACCGCGATCGAGGCCGCCCGTCGCTCGG 40213 28 100.0 33 ............................ GGTCCTCAAATCGTCGGGAATCAGACAGATACA 40274 28 100.0 33 ............................ CGCAATCACATCGCCGGGCTTGGTCATCAGGTA 40335 28 100.0 33 ............................ TACGGCTCGATTCTCATCACCCGATGAATAACT 40396 28 100.0 33 ............................ CGTCCGCCGAGGCTCCAAGCGCTTCGAGGACAA 40457 28 100.0 33 ............................ CTCACACCCCCGTGCCGTAATCCCGGTCACAGC 40518 28 100.0 33 ............................ TGAATGTCATTTGCATTACCCATTCGAGTAGGG 40579 28 100.0 33 ............................ GGCGACGCGACCATCACGGGGCGCACGCGTCAT 40640 28 100.0 33 ............................ GGGGGGCGCTGAGACGGACGTCACTCCGGGCCG 40701 28 100.0 33 ............................ CATGGGGCGTCACTGCCGCCGTCATCTTGGTTC 40762 28 100.0 34 ............................ ACCCCCCCGCCTCCCTCGACGCCGGGGCGCTGGA 40824 28 100.0 33 ............................ GAATCTTACTGTCCATTGCTCCTCACTCTCCCC 40885 28 100.0 33 ............................ CCCGACGAACAACTCAACAGAGAGGAGGCCCAT 40946 28 100.0 33 ............................ CGACGACTCGGCGCTCCGGGCCGGCCTCGGCAT 41007 28 100.0 33 ............................ GCACCACCGAACCGAAACTCGCCACCCGCCCCG 41068 28 100.0 33 ............................ CATCCCCACCAGCAGAACGGAGCCCCCCTCATG 41129 28 100.0 33 ............................ CTGCGGCGCCTCCAATGGGTCGACGACTATCTG 41190 28 100.0 33 ............................ TGCGGGCGGCGACCGCATCGAGATCTCCTCGTC 41251 28 100.0 33 ............................ CAAGAGCGCCTACCTCGCCGTCGCGCGAGCCAA 41312 28 100.0 33 ............................ GGTCCGACCTGCCCGACGATGTTCGGGAGCATC 41373 28 100.0 33 ............................ TTGCCGGAAAGGCTGTTCTCATACCGCAGGATA 41434 28 100.0 33 ............................ CACCACGCCAGAAAGTCCTCGTGAACATCAAGA 41495 28 100.0 33 ............................ GATCGGGCAGACGTCGGAGAAAAGCCTCCGCAA 41556 28 100.0 33 ............................ CACGGCGACGATCAACGGCGGGTCCATGCGTGC 41617 28 100.0 33 ............................ CATCGTCGTTGGTGAGCCAGCCGCGTGCGCCCA 41678 28 100.0 33 ............................ ATCGTATGGTGCCAAGAAGTTGGCGATCCGGAA 41739 28 100.0 33 ............................ GGTCGACGGGGCCGGGCAGGGGAGAGGTCGAGC 41800 28 100.0 33 ............................ GATCGCCCCAAAGAGTAAGGAGAAAGCGCTTGG 41861 28 100.0 34 ............................ CCGGGGGGGGATTCTGGGAACGCGGAGAACGAAA 41923 28 100.0 33 ............................ CCGCTCCCTCATGCGGACCACCGCCCTGCAGCC 41984 28 100.0 33 ............................ CGGCGTGATGTTCGTGATGCGCGATACGGGCGG 42045 28 100.0 33 ............................ GGACGCCCGGGGTCTATCAGGCGCCGTAATCGA 42106 28 100.0 33 ............................ CATTAGCGGGTATTTTCAGTTGACCCGTATTCG 42167 28 100.0 33 ............................ TTCGGGTCGCCTCACGAATTGGAGGTCTCTTGC 42228 28 100.0 33 ............................ TGAAACTCGGCAGGCCCGTACCGTTGTATCGCT 42289 28 100.0 33 ............................ CAGGCGGTCCACCCGCCCCAGGGCGGCGATCTG 42350 28 100.0 33 ............................ CAGCCAGGCGCCTGACCACCCGCCACGTCGTGC 42411 28 100.0 33 ............................ CCACTCGGGGTCCCAGACGCCGACCTTCTCAAG 42472 28 100.0 33 ............................ CCTGGATATCAAAGTCCGGGGGCACGGCATCAC 42533 28 100.0 33 ............................ GGAGACACCATGAACCGCGTCATCCGAGAATCC 42594 28 100.0 33 ............................ ATGGGCGGCACAAAAGACGTGACAATCAACCGC 42655 28 100.0 33 ............................ GTCGAAGACCGGGGAGGTTCGCATCAAGGTCAC 42716 28 100.0 33 ............................ CCGCTCCGCAGTCACTACAACTTGCAGGATGTC 42777 28 100.0 33 ............................ CCGCGTATACCGGTAACCGCATATCAACATACA 42838 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================== ================== 48 28 100.0 33 GTGCACCCCGCGTATGCGGGGATGATCC # Left flank : CGTCTCCGGCGGAGCGAACTACGCCGCGATCGAAGCAGAGGAGGCAGGTAGATGGTAGTCCTGGTCCTCACCGCCGCTCCCGCACAATTGCGCGGCTCGCTCACGCGTTGGCTGATGGAGGTCTCTCCCGGAGTGTTCGTCGGGCATCTCGCCGCCCGGGTGCGCGAGCAACTATGGGATCTGGTCAGGGCTTATATCGGGGATGGCCGCGCGCTCCTTATTTGGTCCACGAGGTCGGAGCAACATTTCTCTGTGGCCTCGCTCGGCCACGACCGGGAACCTGTGGACATCGAGGGCTGCCTGGTGATGCGGACTCCGTATCGGGCGATCGAAGGGTCGCAGGCGATCCCCGGGGTTGTGAGGCCGGCGAAGGAGTCCTGGTCCGTCGCCGCTCGTCGACGCCGCTACAGGAACTCGGCGGAACGGGCTCTAGGTAGGGAGTGAAGGCAGAAGGTTTCAGATAGGTTACGATGCTGTTGGGATCCCAAGGATCACCAAGT # Right flank : TTCTGTGCGCTGTCATCCCCGCTATCGCAGAAGGTGC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCACCCCGCGTATGCGGGGATGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCGAATGCGGGGATGATCC with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [51.7-25.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 5086-3472 **** Predicted by CRISPRDetect 2.4 *** >NZ_MVIW01000069.1 Actinomyces denticolens strain DSM 20671 Scaffold69, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 5085 28 100.0 33 ............................ CTGGGTCCGGCGCGCCGTCGACGATGCACGCCG 5024 28 100.0 33 ............................ GACCGACGTGCGCGGCCTCTCCAGCAGCATCGT 4963 28 100.0 33 ............................ TGGCCACATTATTCCAAAAGTACGTCCATTTCA 4902 28 100.0 33 ............................ GGGTCGCCATGCAATCAAGGTAAGTGAGTTTCA 4841 28 100.0 33 ............................ GGGCTCGTCGAAGGGTCAGGGGTCGTCGTCGCA 4780 28 100.0 33 ............................ CGCCAGGCAACCGATCAGGAGGCTCATCATGAG 4719 28 96.4 33 ............C............... TGTAGAACGCACTGCGCGTCATCATCTCCAATC 4658 28 100.0 33 ............................ CAGGGGCCGCATATTGCCCGTGTAGAAAACGCC 4597 28 100.0 33 ............................ TCTAGTCCGCTACTGCGGAGAGAATCGTGGATT 4536 28 100.0 33 ............................ TCTAGTCCGCTACTGCGGAGAGAATCGTGGATT 4475 28 100.0 33 ............................ CTGCGGCAACCCCACGGACCTGGAAGCAATGAC 4414 28 100.0 33 ............................ AGGCGAACCCGACCCACGCGACCTCGTCGAGCG 4353 28 100.0 33 ............................ GGAGGGCATGATGAGCGACGTCATCACAGGGCG 4292 28 100.0 33 ............................ CAGTGGGGCAGACCACACCTCAGACGTCTGATG 4231 28 100.0 33 ............................ CGACGTCCTGGCCGCCGTGGCCACGGGCCAGGC 4170 28 100.0 33 ............................ CGCGCCGGCGATGACGAAGGTGTCGGTCCCATA 4109 28 100.0 33 ............................ CGCTTCCCACCGTGCGCCTCACCGTTGAAAACC 4048 28 100.0 33 ............................ TGCTGCGAAGATCCTCTACCGCACCCGAATGGA 3987 28 100.0 33 ............................ TCTATGGGACCCTCCGGGCAATTAATCCGGCCA 3926 28 100.0 33 ............................ CCTATGCCGGAAGCCCCTGAGTTCAACCTCGAC 3865 28 100.0 33 ............................ CTCGTAGTGGATGAAATAGATTCCTGGCGACCC 3804 28 100.0 33 ............................ CGAAGTCTGCCGTGCCCCGGATAGGACCGAGCC 3743 28 100.0 33 ............................ TACGTCCCCCTCCAAACCGCCTTTCATCTGGCC 3682 28 100.0 33 ............................ CCGCCCCGTGCCGTGAGAGGCACGGGGCGGCTC 3621 28 100.0 33 ............................ GACCTACCGCAGCACCCCGGCCATCCTGACCAT 3560 28 100.0 33 ............................ CGAGGACGGGATGAAGTTCAGCCCTGACGACTC 3499 28 96.4 0 ................T........... | ========== ====== ====== ====== ============================ ================================= ================== 27 28 99.7 33 GTGCACCCCGCGTATGCGGGGATGATCC # Left flank : CTCCCCCAAGCCCTCCA # Right flank : CGTCGGCAACCGTATCAAGAAGCTCCTCACCCCATACATCTCGCGTATGAAGAGATACGGGGAAGATCCCTGACCGACGCGAGCGCTACCGATGCCGACGTCGCATATCTTGTACATACGGAGATGACCCCAACGACTTATCGAAGCCGGCCTTATCGATGGCACACCTCTCGCATATGCGAAGACAACCTGCGTCACAATGAGTTATGGAACCAGCCCCACAGACACGCTCCAGACCAATAGGGGAATCCCATAAGTCAATCTATCCTTGATTGCTTAATGAGATTCCAGACAAGCCTAGTGGTCCACATAATAAACTATCCATATCAAAGAGTCATTAATTCATATCTACACATCAAGGAAATAGCACACTATAACATATCGTCGAAGCCATTCAATCCAGATAAATGAAGATCGATGACAAAAAGATAAACCATAAGCAGCGTACCACCAAAGGATATATCTATCGATCTCCATGACCTGTATGTGGAGCAAGGACG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCACCCCGCGTATGCGGGGATGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCGAATGCGGGGATGATCC with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [46.7-8.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //