Array 1 232978-233322 **** Predicted by CRISPRDetect 2.4 *** >NZ_QSRP01000001.1 Bifidobacterium longum strain TF07-34 TF07-34.Scaf1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =========================== ====================================================== ================== 232978 27 66.7 39 G..C....C.....C...GCC....GA ACCGCCACGGCGGTCATCACGATCGCCACGGTCATCGCG 233044 27 96.3 54 ........................A.. ATCGTCACGGGAGTCGCGAGCATCACGGTCATCGCGATCGTCGAAGTCACGGTC AGA [233050] 233128 27 81.5 33 GG.A..A.................A.. ATCATCGCGATCATCGCGATCGAAGTCACGGTC 233188 27 100.0 21 ........................... GTCGTAATCATCCTCGAAGTC Deletion [233236] 233236 27 100.0 30 ........................... GTCACGATCGTCGAAGTCACGGTCATCGCG 233293 27 81.5 0 C.............C.....C....CG | GC,C [233310,233314] ========== ====== ====== ====== =========================== ====================================================== ================== 6 27 87.7 36 ATCGGAGCGACGGCGACGCGGACGGTC # Left flank : CATACGGCATAAAGGCCGGGCTCTCACAAGGGCCCGGCCTTTGTTGTTGCCACAGTGATCAACGCCCATGAGTACCTTCGATGATCATCCGCCATTCTTGATGCATGGGAATAGTTGTCAACCGACAACTAAACGTACATGGCGGCAGCACGAGTGCCTTATTCAACATCGAAATATGCAGCGCGAAGAAGCCGAAAAACCAAAAAGGCTTCTATACCGAATGAAACGGTATAGAAGCCTTTTGGTTTGCGATCAAGCCCTTCTCACCCGAGAGAAGCTAGAGAACGATCAGTCCTCGAATGCCGAACCGTTAAGCGGGAAGCCCTACGGGCTTCCCGTAGGTGAGGGGAGCGGCTATGCCGCGACCGATCCGTGAGAGGGATTTAGTCCTCGAACGGATCAAAGTCGCGACGGACGCGGCGACGCGGGCGCTCAGTACGCTCTTCGCGGTCGGCGCGGTAGTCGTCGTAGTTGTCGTCGGTGGCGTAGCGCGGGTTACG # Right flank : GATCGTCACGGTCACCACGGCCACGGCCGCCACGGCGGTCATCGCGATCGCCACGGCTCGGGCGGGCGTTGTTCTCCTGATCCTCGAAACCAGGAATGGCCAGGGAGATCTTGCCGCGATCATCGACACCCTGAACGATCACCTCAACGGTGTCGCCTTCCTTGAGCACGTCTTCGACAGCGTCAATACGCTCGCCGTTGGCCAGGTTGCGGATCTGGGAGATGTGCAGCAGGCCGTCGGTGCCGGGGGTGAGGTTCACGAAAGCGCCGAACGACGTGGTCTTGACGACCTTGCCGTTGTAGGTTTCGCCGGCCTCGGGCACGTGCGGGTTGGCAATCTGGTCGATGATGGCCTTGGCCTTCTCAGCAGCCTCGCCACCCTCGGAGGAGATGAAGACGGTACCGTCATCCTCGATGGCAATTTCAGCGCCGGTGTCTTCCTGAATCTGGTTGATCATCTTGCCCTTCGGGCCGATGACTTCGCCAATCTTCTCAACCGGG # Questionable array : NO Score: 4.79 # Score Detail : 1:0, 2:3, 3:0, 4:0.45, 5:0, 6:0.25, 7:-0.43, 8:0.6, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATCGGAGCGACGGCGACGCGGACGGTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,0] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGGAACGACGGCGACGCGGACGATC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.40,-0.30] Score: 0/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [31.7-30.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.41 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 1448-2022 **** Predicted by CRISPRDetect 2.4 *** >NZ_QSRP01000019.1 Bifidobacterium longum strain TF07-34 TF07-34.Scaf19, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= =========================================================================================== ================== 1448 29 93.1 32 .......T......A.............. GAGATAGCCGACGCACTGGAATCGGCCGCAGG 1509 29 100.0 32 ............................. TTTTGGGGGTCAAGAATTTCATCTTCGGACAT 1570 29 100.0 32 ............................. GAAAGCGCGGCCGTTTGTGACGCCCTACGCGA 1631 29 100.0 32 ............................. GCGTCGAACAGTTCCGATTGGCTTGGTTCCTC 1692 29 100.0 32 ............................. TAACCTCCCCCGAAACCTTCAAAACGCTTACG 1753 29 96.6 91 .......................A..... GAATGAAAAGACGGGGATAACCCCCCGACTGATGTTCCGGTCTAAAGAGCCGGTTGCGTGGGATCCCCGTTACTTCGATTCTACCATACGC 1873 29 100.0 31 ............................. GCCGGCGGCGCTGGCATTCCGATTCACTGGC 1933 29 75.9 32 AG...T......T........G....T.T TCCAGACAGTCGTCCATCGCCCGTGCCACTTC 1994 29 75.9 0 AG...T......T........G....T.A | ========== ====== ====== ====== ============================= =========================================================================================== ================== 9 29 93.5 39 GTTTGCCCCGCACGCGCGGGGATGATCCG # Left flank : GTTTGGATTTCGCGCCCTTCGGCCTGCCCTTGGGCTTCGGGCGCAGCGCCTCCGGCCCTCCGCGACGATAGTCCTGGCACCACTGTTTCAGACACGTCCGGCTGGCGATGCCATAACGTTCCATGACCTCCGGCCTGCTCATCCCACGTTCCAGATGGTCGAGCACAGCGGCGAGCTTCGTCTCGTAATCGTATTTCCTGTTGCCCTCGCGTTCTCCCATGAGCGCCGCCTCTCCGCCGATCCGGTATGACAACAACCATTCTCTCGTGGTTTCCTTGGACACACCAAGCCGGCGGGCGAGCGACTTGGCGCCGATCCCATCGCGAATCAACCCGACGACGATTCTCATATACTCGACATCGTATGAACCCCTGCGTTTCCGTGACATAGAAAACCGCACCTCCAAATCATCGGACATGAATTACTCCAGTCCAACAATCGGGGTGCGGTTCACGGGGGGATGATCCGTTGCCGTCGGTGTCGGCCTTGACGCCGAAGTA # Right flank : AGACAATTCCATGAGCATTAGGGGCATCCTGTTAAGACAACCTGCCATGCCCAAACTGTAGGATAACCCCAGTGAGTCTAAGCCGGCCACGTATATCGCCTATGACTGGGAGGAAGTCAAGAATCAGGCAACAAATCGTGTATGTCCTCAGTACCTAGCGCTTTCATCAGGCATAAAGCCGTCCGAACTCGCATATCTCGTACGTCGTACATGCCGCGCTTATAGTCGCCTACTCGGTTGGCGCTTAGGCCGCTGGCGCTGCCAACTTGCTCTAGCGTCAAGCCGCGTTGCTTTCGCAACTCTCTCATACCCATATTGGCTCATTTCCCTAGCTGGGTTGTGGGTCCGATTATATGTTCAAAACTGAATGGCTGTGGATGAGCAGAACAATGAAACTGCACGGCCCTTACACACCAAAATTGGAAGATTCGCATTGTTATGTGTGCCGTCCTCAATATCAACGCACATGATGGATTTGGACGGTTATCGGTTCAGACTGT # Questionable array : NO Score: 5.33 # Score Detail : 1:0, 2:3, 3:0, 4:0.68, 5:0, 6:0.25, 7:-0.60, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGCCCCGCACGCGCGGGGATGATCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTTGCCCCGCACGCGCGGGGATGATCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-15] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [33.3-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.64 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 40519-44154 **** Predicted by CRISPRDetect 2.4 *** >NZ_QSRP01000011.1 Bifidobacterium longum strain TF07-34 TF07-34.Scaf11, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================= ================== 40519 29 100.0 32 ............................. GCCCGCTGACGACCCCGCCGGCCCGTACCCCG 40580 29 100.0 32 ............................. CATTTTCATAGCCTGATTTTGGGGTGCCGTCC 40641 29 100.0 32 ............................. AACGCGGTACGGTCGGGGATATCGCCGGCCCT 40702 29 100.0 32 ............................. CTCATGCTCGCCGAATCCGGTTCGAGCCTGAC 40763 29 100.0 32 ............................. CAACGGTTCGAGAAGAACATGAAGGGCGTCAA 40824 29 100.0 32 ............................. GTCTGCGCGTGCTGCCCGCCTCGTTGGTGAGC 40885 29 100.0 32 ............................. CCGCCAAGGGTGGAGCCCACCGAGACCAGGAT 40946 29 100.0 32 ............................. ATCGTCCGCGCCATCCAGGTCGGCACCCCGCA 41007 29 100.0 32 ............................. TAGCCGTACTCCACGGAATACGAATCGAATAT 41068 29 100.0 32 ............................. GGTATCGAGATTATGGCGCAGGCATTCAATCA 41129 29 100.0 32 ............................. TACTGTATGGATAATTACAATCTCTCGTTAGG 41190 29 100.0 32 ............................. TCTTGTCAACGGCAAGGCCGATTCATCCAATG 41251 29 100.0 32 ............................. TCCTACCATAGCGTCACAGGTCATCATTACAA 41312 29 100.0 32 ............................. GACGCGAACGGCATCGTCCGCGTCGGCCACAC 41373 29 100.0 32 ............................. GCTCTTGCGGATACCGTAGCCCAGCTTAACGA 41434 29 100.0 32 ............................. GTGACGATCCTGCCCGATGCGGCATCGCAGGA 41495 29 100.0 32 ............................. CCCCGGATCGCCCGGAGACCCCGGAGCGCCGG 41556 29 100.0 32 ............................. GCGGCAGCCTGTATATGAACGCCTTGGACGAT 41617 29 100.0 32 ............................. ACCACCATCACCAAAAGCTACGACGTGCGCAA 41678 29 100.0 32 ............................. TATCTGACCACGGCTCAGGCGGCGGAATACTT 41739 29 100.0 32 ............................. TTCACGTCGAACGGGATCACGACGCTGATCTG 41800 29 100.0 32 ............................. CTTTCCGAATCCCGTGCCCCCGGACGGCGTGT 41861 29 100.0 32 ............................. TCGGCCGACTTGCTGAACCGGTCGCCTTGGTC 41922 29 100.0 32 ............................. GACACGGTGGTCTCCATCGAGATCACGGATGA 41983 29 100.0 32 ............................. CAGGGCGGATACTCCGGCACCGCACAGGACCT 42044 29 100.0 32 ............................. TTGAGCCGTGACCACGGCCGTCTCATCGGCAA 42105 29 100.0 32 ............................. AGCACGACGAAACGCGCGATGGTCGCGGCGCT 42166 29 100.0 32 ............................. GAGGCCTGATCATGCCAGCCCTATACGCCGGC 42227 29 100.0 32 ............................. CAGCATGGCGGAACGCCAACGCTGAATGAGTT 42288 29 100.0 32 ............................. TTTTGACCGCCGAAGTTCGGCGACCGCTTCGG 42349 29 100.0 32 ............................. GGGTGAACATGGACGATACCGAAAACGATGAC 42410 29 100.0 32 ............................. GGCACGACCATAGCGTCTATGGCGATGACCGA 42471 29 100.0 32 ............................. TCAAGTCGGCGCTTGACGTGCAGGGCCTCGCC 42532 29 100.0 32 ............................. GTGTTCATCCACCTTATCGGCGGTCTGCATGG 42593 29 100.0 32 ............................. ACCATCGCGCCGAGTTGAACGAGAAAATCGTT 42654 29 100.0 32 ............................. TTCTGAAGCTGGGAGCCCACCAGCGTGGCGAA 42715 29 100.0 32 ............................. ACGGACGCACCACCGTCATACCCAAGGTCGAC 42776 29 100.0 32 ............................. AGTCGCCGTGGATTTAAATTCTTTGACCTCGA 42837 29 93.1 32 ........................C...T CAAGTCCGCACTCGATGTGCAGGGTCTGGCGA 42898 29 100.0 32 ............................. AGGTGAGTATGGACGACACCGAAAACAATGAG 42959 29 100.0 32 ............................. TGCGGCGTTGGTCAGGCCGAGCAAGAGCACGA 43020 29 100.0 32 ............................. GACTTCCGCGCCATCGCAGACTGGCTCGACAC 43081 29 100.0 32 ............................. GTCAACCAGCTGAAGGCCATGGGTAAGCCGCC 43142 29 100.0 32 ............................. TCGCGTTCACCAGGGAGCTAGAAGACAAAGCT 43203 29 96.6 32 ......................G...... CATGGTTAGCCGAATTACGGCATTCGCCGTCA 43264 29 100.0 32 ............................. GCAACGGGTTGACCGCCACCGTCAACAGTGAC 43325 29 100.0 32 ............................. GATACGGGCTCGAATGGGGCGACCTCGACCTG 43386 29 100.0 32 ............................. GGCATGTTCGAGCGGGGCGTGACCGTATGGAG 43447 29 100.0 32 ............................. CCCACACAATCCGGGTCACTACACTCAGACGC 43508 29 96.6 32 ............................T TCATCACCCTCCCAAGTCTTGCACATCTCATA 43569 29 100.0 39 ............................. GCGAATCTGGACGCGAAGCTGCGAGGCACGATGGAGACC 43637 29 100.0 32 ............................. GAAAAGCTCTGGAACGTGGAGTTGCTGCCGTA 43698 29 100.0 32 ............................. ACGTGGCTCCCGAGGCTCGCGTGCATCTCAAC 43759 29 100.0 32 ............................. ATGAGGTCACCGACCCTGGCAAGCCGCTGGTA 43820 29 100.0 32 ............................. TCGTCGCGTCCCCTGAAGTCCCCTAGTACTGG 43881 29 100.0 32 ............................. ATCGCGGGCAGCGGCTTCGACTCCTCGAAGTT 43942 29 100.0 32 ............................. GGCGACAAGCAACGGATAGTGCCTATATCGGA 44003 29 96.6 32 ............C................ GCGGTGACAGCGCAAGACACGTTAGCCACGAA 44064 29 100.0 31 ............................. GAAATCAGCGACTTCCTCTCGCTGGCAACAA 44124 29 82.8 0 ............C......T....CG..C | AC [44146] ========== ====== ====== ====== ============================= ======================================= ================== 60 29 99.4 32 GTTTGCCCCGCATGCGCGGGGATGATCCG # Left flank : ATAGGACAATCGAGCAAACAAGCAGAAGCATAGGGGCTCATAATGATTGTTATCGTACTTACAGTGTCCCCTCCGAAGCTGCGTGGACACTTGACACGTTGGCTGTTTGAGGTATCCCCTGGTGTCTATGTAGGCAAAGTTTCTGCTCGTGTTCGGGAGCTGCTGTGGCAGCAGATATTGGAGAATATTGGCGAAGGGCGTGCCGTCATGGTGTACTCTTCCAATAACGAACAAGGTTTGGACTTCAGAACACATGGGCAAGAATGGGAGCCAGCGGATTATGATGGATTAAAGCTGATTATGCGACCAAACTCAAGTCAAAAGCAGAAGCGTAATGGAGTTTTGAAAACCAAGAAAAAGACTGGTTGGAGTAGTGCCTCTCGATATAGGCGTTTTGGCCGATGACTGGAGGCAGGAACAATAGTACGAAGATTGGAGCCACTGTGCGAATCCAATTATTGAGGGTCCAGCGCTCAAGAGTTTTCGCATAAAATCGGACT # Right flank : CCGGAAGTTGGACGTGGTTTATTAAGGGTACCTGATTAGGCTGTGAGGGACATGTTCCGGAATTCCTCCGGGNNNNNNNNNNATGTTCCGGAATTCCTCCGGGGTGTGTCCCTCCAGTCGTATCTGGCGTCGTCTGGTGTTCCAGTGGATGATGTATGTGTTTTAGCAAGTTGGCGTCCGCTTTGTGAGCGGTGTTTTTCCGCAGTGTAGGCAGCGGGTTTTCCGCAGGGTGTGCGGTATCGGCCGCTGCCTGTCTGCGTTGTGTTGGTTATTTGGTCATGAGGGCGTGTTCGCTTCGGTAGGATCGGCCCTCGAATCTGATGAGCCGTCCGTGGTGGACGGTGCGGTCGATGAGGGCGGCGGCCATGTTCTTGTCGCCGAGCACGCGTCCCCATCCGCTGAATTCGATGTTGGTGGTGTAGATGATGCTCCTTGTCTCGTAGGAATCGGAAATGATCTGGAAGAGGAGCCTGCTGCCCTCCTCGTCTATGGGCAGGTAG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGCCCCGCATGCGCGGGGATGATCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTTGCCCCGCATGCGCGGGGATGATCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-12] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [55.0-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //