Array 1 121743-124035 **** Predicted by CRISPRDetect 2.4 *** >NZ_CBTK010000261.1 Candidatus Contendobacter odensis Run_B_J11, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================================================================== ================== 121743 35 94.6 90 .......................--............ AGGGGTGCAAACGATGGAAAAACTGCTGAAAATGACTAAGCTCAGGAGGTCGCATTCAATTGATCTGCAAGATTTTTCTGGAAAAATGCG 121868 37 100.0 37 ..................................... ATGTAGCGGGAGGACAGATCAACGGCGGGTTGCGTGG 121942 37 100.0 38 ..................................... CGCTCCCAGTTGTGCGGGGACTGCATACCCGACGGCCT 122017 37 100.0 35 ..................................... CATCAGTCATTGGGGTTTCCAAAGTTTAGGGTGGG 122089 37 100.0 36 ..................................... TCCAGTCGATTGAATCGACTCTGCGAGTTTATGCTC 122162 37 100.0 36 ..................................... GGGCGGTGGACATGCGCCCGGCTGCGGCGCGGTCTT 122235 37 100.0 37 ..................................... ATCCAGACTACGGGGTAATTCGGCGCCCGCTCTGGCG 122309 37 100.0 36 ..................................... ATTCGTTTTCCTCAACGTATTCAAAGGGCGGGCGTA 122382 37 100.0 36 ..................................... TGCGAAGCAGCGAGAATGCGATCCCGCAAATCGCGG 122455 37 100.0 36 ..................................... ATCTCTTCGTCCGTGGAAATCCACCATCCCGCGATT 122528 37 100.0 35 ..................................... TCGCAGTCTGTGGCTTTGCTGCCGACTTGATGAAA 122600 37 100.0 36 ..................................... GCTGCTGCTTCCCATGATCTCGGAGTCGGGAATGCG 122673 37 100.0 37 ..................................... GCTGCTGCTTCCCATGATCTCGGAGTCGGGAATGCGG 122747 37 100.0 36 ..................................... TGCGTAAAAACATTCTGCCACCCAGTTGATCGATGA 122820 37 100.0 38 ..................................... AATTCAGAGACCAGCCATAGGTTGTACAATGACCAGTC 122895 37 100.0 37 ..................................... GAGTGGGCGATCCGTGTGGCCGCAACCGCACTTTTCT 122969 37 100.0 36 ..................................... GTCTCCCTCTCCGAAAACCCATGGCAACTGTTCGCC 123042 37 100.0 38 ..................................... TGTATCCGGCAAAGTCGGCGGAAAGATAATACGTGGGA 123117 37 100.0 37 ..................................... GGAACCGGGAATGCGGGATTATTCACGACTTCAGGAA 123191 37 100.0 37 ..................................... ATCAATGCAGCAGCCGTGGTAAATGCTTTCATGTGTT 123265 37 100.0 37 ..................................... GTTAATACAAAACGATGGTGGCGATCAATTCATGGCG 123339 37 100.0 36 ..................................... TTTTTAACGCGGAATGAGTTAAAGTCTGGTGTCCCT 123412 37 100.0 38 ..................................... GGAGGAATACCGCGATATGGACGTGGTGCTGCAATCCG 123487 37 100.0 36 ..................................... CCCAACTCTGTGGGCGTGTAGGTCATGCCACGCGGA 123560 37 100.0 35 ..................................... CAGCCGCGACGGTCAGGTAGACCGGACCATACGCC 123632 37 100.0 35 ..................................... CAACCGTCATGGAATCCCCACCGGGAACCGGAATA 123704 37 100.0 35 ..................................... TTTTTGTGACTAACTTTATGTCGATAGGTAAAAAC 123776 37 100.0 37 ..................................... GTCACAAAAACAACACTCCCTGGCAAGGAGCGGATAA 123850 37 100.0 37 ..................................... CTGTGTAGCTTGATTATATAGCATTCTTACCGCTGTG 123924 37 100.0 38 ..................................... TATAGCATTCTTACCGCTGTGTGCAGTGTTTTAACTCG 123999 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ========================================================================================== ================== 31 37 99.8 38 GTCGCAATGACTAATCCAATACAACAAGGATTGAAAC # Left flank : GCGGGCGACGGAGAATCGAGATTATCTGCGCCGGAAGATTGGAGCAGTGAAACGGGAAATCGAGGTGTATCTGGCGTCTCCAGTATTACGCTTACGTGGGATTGTAGATGAGGTTTTATGGCTCAAAGATGGAACCATGTCTCCTTTGGACTACAAGTACACCGAGGCGCGGGAAACGGTGTTCAAAACCCATCGGATGCAGATTGTGTTGTATGCGATGTTGATTCGGGAGGTGTATCAGCAAGCGGTAACGCGGGGGTTTGTGGCGTATGTGCGGGATGGGAGTCAATTGCTGGAAGTACCCGTGACTGAGGCTAATATAGCTGAGGCGCGCTTGATGATTGAGCAGATTTTTGACATTATCACCACCGGCAAATTGCCTCGAAAAACGCCGCATCGTATCCGTTGTGAGGACTGCTGCTATAAAAATATTTGTGTTTAGTGGCGCGTGGCTTCTAACACATTGATTTTTATTTTTTATCTGCGCTTTTTTCGATGCA # Right flank : TGTATATAGGTATAGCTCTCCTATGCAGGTTGTGGAATTTTTAGATACCATTCTATTTTTCTAAAATT # Questionable array : NO Score: 6.11 # Score Detail : 1:0, 2:0, 3:3, 4:0.99, 5:0, 6:0.25, 7:-0.13, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCAATGACTAATCCAATACAACAAGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.16%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-2.70,-3.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.78 Confidence: HIGH] # Array family : NA // Array 1 5923-3242 **** Predicted by CRISPRDetect 2.4 *** >NZ_CBTK010000258.1 Candidatus Contendobacter odensis Run_B_J11, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================= ================== 5922 37 100.0 34 ..................................... CTTACCGCCGTCGTCCCTTCCTGTGTGACCCGGA 5851 37 100.0 37 ..................................... AAGGCCGATCAACACTTCCAAGAGGCCGATTTGCGTT 5777 37 100.0 35 ..................................... ATCAACATCTTGCGTGAACCAAAAATCGTTGATTC 5705 37 100.0 35 ..................................... TATTTTCGTCGGCGATACCCTGTTCGCCGGCAGCA 5633 37 100.0 36 ..................................... GTGCCCAACTGAAATGCGGCGACTAGACTTTTCGCC 5560 37 100.0 37 ..................................... CAACTCTACCGCATCTCACAATGTGGCGATAGCCAAA 5486 37 100.0 38 ..................................... ATCGTATACACCGCCTACGTCGAGCAACAAGGTGGTTG 5411 37 100.0 37 ..................................... CATACCAATCCTTTAGTTCCATAGCATCGTCTGCAAA 5337 37 100.0 37 ..................................... CGTCCGTCCAGTTTTCAGCAACGGGTTCAGCGATAGG 5263 37 100.0 37 ..................................... AAAAACCCGCTTTCGCGGGCCTATGATGTTACGCAAG 5189 37 97.3 37 ...................................C. CCCCTGACCCGCAGGTTGCCCGAAGACGGTTGAAGAT 5115 37 100.0 36 ..................................... ATTCAATCCGCTAAAGCGTCTTGAATTTAGCAACTT 5042 37 100.0 37 ..................................... ACCTTTCCTCAGGGCGGCTACTCTGCTTTCAAACGTA 4968 37 100.0 39 ..................................... AATGGATGATCTTAGTCTTGCGCTCGCTTCGGATTCGGG 4892 37 100.0 36 ..................................... CAAACGCATCGTGGTGCGCGAAGTGGTGATCGAGGG 4819 37 100.0 36 ..................................... CTAATCTTATCCTGAAGAAGAAATCAGGATTCATAT 4746 37 100.0 34 ..................................... AATGCCGGGGCGGAACAGTACAAGCCGAATACTT 4675 37 100.0 37 ..................................... CCAGCATTCCTTAGTTCATGCGCGAAACCATCGTGTT 4601 37 100.0 37 ..................................... AAAGAAGCCGTCTTCACTTCAGCTTCTTGAATGATGA 4527 37 100.0 36 ..................................... TTCTTGATTCTCCATGCCATAATTCAGCACCAATCG 4454 37 100.0 36 ..................................... CCATCAATCCATTGATATTCAAGATAAGTTTCATTA 4381 37 100.0 37 ..................................... CCTAGAATAATAGTCGTGAAATCCACTCGATCACCTA 4307 37 100.0 36 ..................................... ATCTCGACGGTCTTGTCACCGCTGGTGAGTTTCATT 4234 37 100.0 37 ..................................... CCAAAATCGAGCTTCCATAGCTGTTGAGCGCCGATGA 4160 37 100.0 36 ..................................... ATGTCCGCCATATTCCCAACAATATGAATCGTCTTT 4087 37 100.0 36 ..................................... CTTCATAAGACAGAACGACCGTAAATCCTAAAACAG 4014 37 100.0 38 ..................................... CCCTTTAACCTGGGTCGTGATACTACCGTTAGTAGCAT 3939 37 97.3 37 ................T.................... CTCTCGTAACCATCTCGGTTGCTGGCAGACAAGCGAG 3865 37 100.0 36 ..................................... TAACGTACTCGATACCACCAGCGATGGAGTAGCCTT 3792 37 100.0 36 ..................................... TATGCAACATATCATTTTGAAAATAAAAGATATTTT 3719 37 100.0 37 ..................................... GGCATCTTAACCTAAAGATCAACAATGCGAGACTAAA 3645 37 97.3 37 ...A................................. GCTTAAGGGCTATCTTAGACATCTTTGAAATAAACTT 3571 37 100.0 37 ..................................... CCATCTTTCGGTTGCTGCTTAGTTAGCCAACGATCAA 3497 37 100.0 36 ..................................... CTGCATGGCGGCATGTTCTTCGGCCAAGGCCATGAA 3424 37 100.0 36 ..................................... ATAATATGCTTCAGCGTACTGAAGACATTATACTTG 3351 37 97.3 36 ...........................A......... TCCGCCAGTTTCGCCGCGTGATCGTCAAGTACGGTT 3278 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ======================================= ================== 37 37 99.7 36 CTCCGAAACACCCCGCCCGCTAATAGGGCTTTGTGAC # Left flank : CGCTGATGCAGGAGCCGGTGTTGTGGCAGGGTGAACACCATCCCTATCGGCAAATTATTCATCGGCAGGTGGGAGAATTTGCCCGGTATCTGGATGAACCGAGTTATGAGTTTCGACCGCTGGCGTTAAGCGCGTTGGGCCGATGAGCGATGCGATCCGTCGTGAGGGTGTGCGAGGTTCTTGATTGAAAGCTGATTTATTTCAAGGGGTTGTGAGAAAACAGCTTCAGTGACCGATCGCATGACAAATAATTGATTTATTGATGATTTTTGCTTTGGGATGGGTTAGGAAATGGGTAAAAAGGGTATTCGTTGCGGTCGTGATCGTATGGCGAAATTTTAGTCATTTTGTCGTGTTGGGGGGACAGTGCGGCGGGTGGATTGTTTTGCTATAGTCGTCAAGGTTTCTATTTTTAATAAGGACTTGCGAGGTTCTCATCGAGATGGTAGCCCACGCTTCAGCTTTTTTTACGCGCCGCTTTGAGCCTGCGGCTGAATGCT # Right flank : TGACCCAGATCGGCAAAAAAAGACGCTTTGGATTGCATAAATCCCTGACAGCACAAGGAGATAGCGAACCCAAGCTAATCGGCAGCCTGATCGGCGAAATATCGATCGAATGATTGGGTTATCATTGAAAAATCAATAACCTGAAAACTGCAAAGATCGGCCATGACTACCCTGCTGGAAACCCCCTCACGGATCGAACCCTGCCTGCTGGAGCAAACCAGCCCCGAACTCGTCGATCTCATCGCCACCCTCGCTGCGGCGGCAGAACGGCTTGGCGCACGGCTGCACCCCCGAACCGCCGCCAGCCTGGCCGACCTGGTGCGGGTCATGAACTGCTACTACTCCAACCGGATTGAAGGCCACAACACCACCCCGCGAGAGATCGAACAAGCGCTCGCTGACCAACTCGCCCCCACCGAAGATCGGCGCAACCTGCAACTGGAAGCACGGGCGCACATCCGGGTTCAGCGTGACATCGACCGACAATCCGCCGCCGGCCA # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTCCGAAACACCCCGCCCGCTAATAGGGCTTTGTGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [7,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-6.80,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [53.3-45.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.15 Confidence: HIGH] # Array family : NA //