Array 1 819-397 **** Predicted by CRISPRDetect 2.4 *** >NZ_QURG01000074.1 Aeribacillus pallidus strain W-12 scaffold74, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 818 30 100.0 36 .............................. CGCGGTGTGTCCGGGAACGCTTCGTAACCATATCCG 752 30 100.0 37 .............................. TTTGGACTTTGCGTACTTTGTAATGGTTTGTATCATG 685 30 100.0 34 .............................. TTTCCCGTGAGCCGCTCGAAATGTTTTTCGATAA 621 30 100.0 33 .............................. ACTCTTGCAGACCTTTTGACATTTTCAATAATT 558 30 90.0 34 CA..N......................... TTTCCCGTGAGCCGCTCGAAATGTTTTTCGATAA 494 30 100.0 38 .............................. ACTCTTGCAGACCTTTTGACATTTTCAATAATTCATTG 426 30 96.7 0 ................C............. | ========== ====== ====== ====== ============================== ====================================== ================== 7 30 98.1 36 GTTTTTATCTTAACTATGAGGAATTGAAAC # Left flank : GGTGGATGGTACCCAGAAGACACAGTTTTTTCATCCATATGATGAAGCATTTCCACATTTAGTGGAACTTAATTTTCGCAATAAGTATGAAGCCTATTACGGAGATCCGCCACAAGAGAGATTGTTTATTGAACCTTTACATGTTACTAAGAGACATAAAGTCGTCACGACTTTTAAAAATTACTATATCACTGCATGGCAGGGAAGGTATCGTTTGCGGTCTTCTCCGAAGTATCTTACTTTCCTTTTGCAAACTGGAATAGGCGGACGAAATTCTCAAGGGTTCGGAATGTTCCGTGTTATTCGAGAATTGTAGTAACAGGGAAATATTTGTCGTCGACCCCCAATCGTGCAAAAATCCCTGGGGATCGACGACTCTTTTAAATCTTTATTGAGCCCACCTAAATCAAAGGATTGATAAAACTTACCTCCTTCGTTAAAATAAAAATAACCAATCAACCATTTAAAACCAAATACTTATGTAGCAACAATTTTTTGGG # Right flank : CATTTTACATTGACAGTGTTTTCTGACTCCAGCGCAACATGTTGATTCTTATGGATTTTAATGACCAAGATGATGATGGAATTTTGCTTGACATCCTGTAGGAAAGTACTAATAGTCGAAAAATGGGAGTACAATATCACTTGGCTTTAGACGCATCAAGGTTATATTTTTTACTGTACGGATTAGAAACTTACGGTATACGGGGTCTTCCCTCATTACATTCACGTAGTGGGGGACAGGCCCCATAATCATTTCATCATAAATAAGTCTCAAGACTTAGTTGAATATACATTTGAGGTCCATTTTGGAAAATCACTTTTCTCTGTATTCTAAGGAAGAGAAAAGTAATTGAATTTGTTTTTCTTTTAAATTCATTAGCATTGCATAAATATAGTTA # Questionable array : NO Score: 8.96 # Score Detail : 1:0, 2:3, 3:3, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTATCTTAACTATGAGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:73.33%AT] # Reference repeat match prediction: R [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,-0.60] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.41 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 4236-3936 **** Predicted by CRISPRDetect 2.4 *** >NZ_QURG01000078.1 Aeribacillus pallidus strain W-12 scaffold78, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 4235 30 100.0 34 .............................. ACAAGAACACCATCTTCATTCCTAAATAGCTTGA 4171 30 100.0 39 .............................. AATGAGTTAGGGGTTAAACCTCGAATTGCTAAAGAATGG 4102 30 93.3 38 ...C.............G............ TCAAGTATCTGGAGCATCTGATCGGCGCTTATGCCCGC 4034 30 93.3 39 .................G..........G. AATAACTTTCGCAGGAATCGGCAGAACTCCATAAACATA 3965 30 86.7 0 ....................A.C..A..T. | ========== ====== ====== ====== ============================== ======================================= ================== 5 30 94.7 38 GTTTTTATCTTAACTATAAGGAATTGAAAC # Left flank : AACATTTTTTGA # Right flank : TCATTCATTCGGACTGGTTCAGAACACGCAGGGCAACGTTTTTCATAACTTATTTACTACCCTTTCTCCTTGACAGATGTCTGTAGGAGAAAGGGTTATTTTATTGGCGAACATGATGTAGAAGATTCCTTTTTTTCTCGTTTTGGATTAAATGGACTTGTCATATGATCGTTTTTGACTGATTTTTGTCATAAAACGACCATTTTTGAATGTTTTTGATAAAAAATGATAGATTTTCGAAAGTGCTTACACTATAATGAAATTAGAGAAAGAGAAAACATCCAGATGGGAGTTGATAAGGCTGCTAACACCAGAGAGACACCGGATCATTTTAGAGCTGTTGGAACAAAAGGGAGTCGTCAAAATTCAAGAATTGGTGGAGGCAACCTCTTCGTCAGAATCTACGATTCGAAGAGATTTAAGCCAATTAGAAAAAGAAAAAAAGTTAAAGAGAGTTCATGGCGGAGCTTCCTTATTTCAACAAAGAAGTGAAGAGCTGA # Questionable array : NO Score: 8.72 # Score Detail : 1:0, 2:3, 3:3, 4:0.74, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTATCTTAACTATAAGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.67%AT] # Reference repeat match prediction: R [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.40,-0.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [60.0-16.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,9.41 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 2191-753 **** Predicted by CRISPRDetect 2.4 *** >NZ_QURG01000079.1 Aeribacillus pallidus strain W-12 scaffold79, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================================= ================== 2190 30 96.7 36 ................T............. TGTATCTGTCGACGTAGAAAACTACTTGGTAACCGT 2124 30 96.7 37 ................T............. TCGTTTAATAAGCGGTTAATCTCTTTCAACAAAATTC 2057 30 96.7 35 ................T............. CCAGATGTTATCTTAACAATGCGATCTTCAATGAC 1992 30 96.7 36 ................T............. CTTTTCGGTCAGTAACAATTTGAATAGGTGGCAATC 1926 30 100.0 36 .............................. TCGGTCTTGGCCCGGAACGTGAAGATGGTACTCGCC 1860 30 100.0 36 .............................. ACGCTTGATCGTGCCGTCAGTATCCGCAAAATCCGC 1794 30 100.0 36 .............................. ATAACGTTATATAGTCTAGTCTGCTAGAACATGAAA 1728 30 100.0 55 .............................. CCGATAAGGACGAGCGCAAAACGAAAGAGGAAATNAATTTGAATAGGTGGCAATC 1643 30 100.0 36 .............................. TCGGTCTTGGCCCGGAACGTGAAGATGGTACTCGCC 1577 30 100.0 36 .............................. ACGCTTGATCGTGCCGTCAGTATCCGCAAAATCCGC 1511 30 100.0 36 .............................. ATAACGTTATATAGTCTAGTCTGCTAGAACATGAAA 1445 30 100.0 37 .............................. CCGATAAGGACGAGCGCAAAACGAAAGAGGAAATCGC 1378 30 100.0 38 .............................. TAGAAACATACAAGATATATCTTGTATGTTGTATATAT 1310 30 100.0 36 .............................. ACTAAATTCATAACTTCTTTAGATACTTCTAAACGT 1244 30 100.0 37 .............................. ACTAAAATCAATCAAGACATTAGCAAGTATGAAAATC 1177 30 100.0 35 .............................. AAGAAGATGATGAATAATGGATCCACTCAAACAGC 1112 30 100.0 38 .............................. TAGAAACATACAAGATATATCTTGTATGTTGTATATAT 1044 30 100.0 36 .............................. ACTAAATTCATAACTTCTTTAGATACTTCTAAACGT 978 30 100.0 37 .............................. ACTAAAATCAATCAAGACATTAGCAAGTATGAAAATC 911 30 100.0 35 .............................. AAGAAGATGATGAATAATGGATCCACTCAAACAGC 846 30 100.0 34 .............................. CCGCGACCGACCGGTTTGTGTTCGATCGTCACCA 782 30 96.7 0 ................T............. | ========== ====== ====== ====== ============================== ======================================================= ================== 22 30 99.2 37 GTTTTTATCTTAACTAAGAGGAATTGAAAC # Left flank : TAACGCTGCCGGCTATGTATGCGCCGGAGCGGACGAGTTGACCCAAAAAATGCTTGAGAAATATATTGTTCATATAATTTTTGGATTTCACAATCAATTCTTGTATAAATTTACATCTGGTGTATAATCAATTTGAGATTCAAAACAATCACCATATTACAAAATCAATAGATCAAAATGTTCCAAAGAAAGAAGAGATCGAGAAAAAGCTGGTGGAATATTGTCTAAGATACAGAAGCAGCAGTAAAAAGCATTCTGGAAAAAACACGGATTTAAACAAACTGGAATTGTCGATCTGCAAACAAACGTTATGTTTTAAAAATAATGAAATTTGTCGTCGACCTCCAATCGTGCAAAAAACCTGGGGGATCGACGACTCTTTCAAATCTCCATTGAGCCCGCACAAATTAAAGGATTGATAAAATATAACTCCTTCGTTAAAATGAAAATAACCAATCAACCATTTAAAACGAAATGCTTATTTAACAACATTTTCTGGG # Right flank : ATCCTTTGGAGATTTTTGCTACCAAAACATGGGATAGATGACATATTATTTTGCTTCGAACATGATTTGATTGTAGTGTGAACAATTTTGCTGAGGTAGTCAAAGTCTGTCAAAAAAGCGTCTATCCGAATGGATGGGCGTTTATTTATTTGCTGAAAGGTAAGATATCTACCGACTTATTTGAAATTAAAATAATTGTTTAAATGAGAATTTCCTTTAACTCAAAAATAGGATAAATTAATTTGAAGGGCTTAAATTAGAAAATTTGTTCCCTTTTCATTTCAACACATGCATTCCAACTTAGGCATGTGTTTTTTTATTTCAAAAAAATTTGATAATATAAATAAAGGAAATTTTGGAATTGTGGTGGGAAAGATGCTAGAAAAACTTTTAGTTGAACTCGCTAAACAGATAGATTGTATTTACACATTAAGCTCCAACAACCCAAATTGGATAACAAAAGTTGATTCAAATGGGTTTTATGTGGAAACAGAAAAATC # Questionable array : NO Score: 9.18 # Score Detail : 1:0, 2:3, 3:3, 4:0.96, 5:0, 6:0.25, 7:-0.03, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTATCTTAACTAAGAGGAATTGAAAC # Alternate repeat : GTTTTTATCTTAACTATGAGGAATTGAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:73.33%AT] # Reference repeat match prediction: R [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.40,-0.40] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.41 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 74873-75037 **** Predicted by CRISPRDetect 2.4 *** >NZ_QURG01000011.1 Aeribacillus pallidus strain W-12 scaffold11, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 74873 30 100.0 36 .............................. ATCAATGTTAGCAAGCTATTCAAAATAGCCGAGTTC 74939 30 100.0 39 .............................. TTCGGACTTGCCAGAAATTGTACGCTCTCGGCAACAACT 75008 30 76.7 0 ...................AA..A.ATT.G | ========== ====== ====== ====== ============================== ======================================= ================== 3 30 92.2 38 GTTTTTATCTTAACTATGAGGAATTGAAAC # Left flank : TTAGGGACATCCTTTTTTAAAAAACACTTCAAGGTTTTCCACTTCTTAGATATAGTTATATTGAAAAAAACGCAAAAAATTGAGATTGACGGTGTATTTTTTAGCTGGTTCGAAGACAATCGCAAAATTAAACAATCTTTTCAAATATCCTGGATATTTGGGTCTTAAAAGGATCAATGTGAAAATGGTTCAAAAAGGGATGGAAAAAGCCGATGGATATTCAGCACAAAAACAGAAGCAGCAGTAAAAGCATTCTAGAAAAACATATATTTATAAAGGATGGAGTTATCGAGCCGCAAACTGAATACGTCTGTTTTAAAAATAATAAAATTTGTCGTCGACCTCCAATCGTGCAAAAATCCCAGGGGATCGACGACTCTTTTAAATCTCCATTGAGCCCGCGCAAATCAAAGGATTGATAAATTTTTACTCATTGGCTAAAATGAAATTAACCAATCAACCATTTAAATCGGAATGCTGACCTAACAACATTTTTTGGG # Right flank : GGCAAAAAACTTATTAAGATTAGTAGCACAGACCACGGTCAAGGTATGTGCTACAATTTTTTTATAGCAGAAGGAGAAGGGCAGAATAGATCGTGACAGGGTCCAAGTATCATTAGTTCGTAATGCGGTTGCATTAAGGACAATCGGTCGTTCCGAAGAACTTTTGCGGGAACTCACCAAGGTACACATCGAGTTTAGAATTGCGGAATTGGTTCACAACATAGTGAAGTAACAGTCATCCGCCAAGCTGCTTTAAACAAAAATCGAAAGTATACAAAACAAGTGGAGAAAAGCAGCAAGTTTTCTCCATTTGTTTCATTTTAGGAACTTATTGGACAGTTTCTAGCAATTTGGTGAAAAATATGAAATTCGTTTGTACAATGATTGTGGTTATGATAATTTAGTAATTGGTGCATATTAACGAAAAAGGAGACGTCAGAATGGATCGAAAGATTAGGGTAATGACCATATTTGGTACAAGACCTGAGGCGATTAAAATG # Questionable array : NO Score: 7.97 # Score Detail : 1:0, 2:3, 3:3, 4:0.61, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTATCTTAACTATGAGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:73.91%AT] # Reference repeat match prediction: F [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 92% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 92712-92285 **** Predicted by CRISPRDetect 2.4 *** >NZ_QURG01000009.1 Aeribacillus pallidus strain W-12 scaffold9, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 92711 30 100.0 37 .............................. ACACTTTCTTTGCATCCGTTGATTCAAGCAAATGACC 92644 30 100.0 34 .............................. AATTGATATACCTGATCAATTTGTTGATATACCG 92580 30 100.0 38 .............................. TATGTGTAGCCATATAGACCGCTATTTTTTAAAACAAT 92512 30 100.0 37 .............................. CGCCGATCGGCTTCCGTCAATTTCATTGCGAAAATCC 92445 30 96.7 36 .....................G........ GCGATCCCTTTCATTCCAGTGCTGCTGTTCAATTTT 92379 30 96.7 36 .........................A.... TGTATCAGACCGCAAGAAAAGCTGAAGCAACCATTC 92313 29 80.0 0 ..........A.C.C..A..-.T....... | ========== ====== ====== ====== ============================== ====================================== ================== 7 30 96.2 36 GTTTTTATCTTAACTATGAGGAATTGAAAC # Left flank : ACTTGCTTACCGCTATCCGATTAAAGAGATGTGTCCAAGTCCTGAATTTTTAAAAATTTTATCTCAATACGAAGTACCTATAACTATGTCTTCTGATGCTCATTTTCCAGATGATGTAGGCAATTTATTAGATGAAGCGAGAGAATTGTTAAAATCAATCGGTATTAAGAAAATAGCAACATTTGAGAAAAGGAAAAGAATTGAAATTGATTTAGACAAGTAGTACGGGAAAACTTATGATATTATAAACTGCTTTCAACTATGTACGAAAGAGATGGAAACTTGCAATTATAACGGAACCTCTTAAAAATTGTCGTCGACCCCCAATCGTGCAAAAATCCCGGGGGATCGACGACACTTTCTTTTTTAGAGTAACGATGCAAAATCTGCAGAAAATAAACGAAAAACAAAGAATTGATAAAAATTCCTGTTTACGTTAAAATGAAAATAACAAAATTTCCAGTATTATCAAAACTTTGTCATATCAACAATTTTTTGGG # Right flank : AATAATCTCGATATCACACGATAAAAGAGTAAGAAAAGCTCATAGACAAATAGATGGAAAGTTTTTTGTACAGTAAATAATCCACCTGCAGGACGGCTTCCTGGTAATCCGTATGGGTTGTAGGTACGTTACGATACCCAGCATTTGATGATGAAGAATTAAGCGAAAAGGTTGAATGTAAACCGTTTAATAGCATTGTTGAAGTGAAAGAATTTTTCCAAATCAGTTTATTAGGGCGAAGAAGAAATATTTTTGGATAAAGAAGAGACTTTTAAAATAAAGCAGATTATAGTGATCACAATTTTTTATGTGAGATGGTCAAGAAAATGAAAGAGGATAGTAAAGAACCTATTGTTACTAATAAAAATAAACCTGTTGATGATCAAAAAGAAAAACAAAATGAAGATACAAGATCTGATCGTTTTTCATGGAAGATAGATGATGTTGAATTCTATTAATTTTTCAAAAATTGGCGCTCCTTTTAGGAGTGCTTTTTATTT # Questionable array : NO Score: 9.07 # Score Detail : 1:0, 2:3, 3:3, 4:0.81, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTATCTTAACTATGAGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:73.33%AT] # Reference repeat match prediction: R [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,-0.60] Score: 0/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-76.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.41 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 23818-23654 **** Predicted by CRISPRDetect 2.4 *** >NZ_QURG01000031.1 Aeribacillus pallidus strain W-12 scaffold31, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 23817 30 96.7 38 C............................. ATATACTGCCTCATAGTAGAAGCATAAAATACGTCTCC 23749 30 100.0 36 .............................. GTAATATTCCTCGGCACAAAATCCCATCTGCTTGAA 23683 30 96.7 0 ......................G....... | ========== ====== ====== ====== ============================== ====================================== ================== 3 30 97.8 38 GTTTTTATCTTAACTATAAGGAATTGAAAC # Left flank : ATTAAGGATGGATATAAAAACATATTTGTCGCCGGATTCAGTGCAGGAGCAGCCGTTGCATGGCTATGTAGTGAAGAACGACTTGTTGATGGAATTATTGGGTATTATGGTTCCGTATTAGAAATTATATGGAAATATCGCCTCAATGCCCGGCATTGCTGTTCTTTCCAGAAGAAGAAAAATTATTTAATGTTGATGAGTTAATTTTAGCTTTAGAAAACAAGCATAATGTTGAGGTTCATAAGTTGAATGGACAACATGGATTCAGCGACCCATTCTCTCCAAAACATAACGAAGCATTAGCAAAAAAAGCTTTTAACCAGATGTTGTTTTTTCTTTTCGACCTCCAATCGTGTAAAAATCCCTGGAGATCGACGACAGCTGTTTTTTGAAGGAAACAGCAGAATAATGGGCCATTGCGAAAATTTTCCATGTTCCTTATAATTAAAACCAACATCCGCCATTATTTAGAAAACATACTAACATCAACGTTTTTTGGG # Right flank : GCCATATCTTGAAGCTTCAGTGCTCGCTTTTTGCGGTTTTTAAGTATAAGGAATCAAAACTAATTGAGCATTAGTTCACTTGAAAGCGGAAGCAGTTGCCCGATCTGTGAGCAATAGTTTCTCAATTATAAAGATCAACGAATAAACATATGCAGTGCCATTTATTTTTGCCTCTTGCCTCTGTTGCATCACTTTTCTACCCTATTGATCTCTCAATGAATTTAGACATTTGATTTTATAATCGTATCTTATAAAAGGGAGAAGTCTTAAGACAGCCGATATCAATTCCTGTTTGCAGACCATGCGGACGTTTTTCAACTCAATTGCAAATTCCTTGTAAACACCCTTGCCTTTCATTCATTCACAAATAAAAACAGCTTTCCTAAATACATGATCCCTCCAAATTTGAAATACCTTTACTTCACGAAAATCAATCATATTCTTTAGCAGACAATAAATTTGGCGAACGATGAATGGATAAGAGAAAAAGTTATTCAGAG # Questionable array : NO Score: 8.56 # Score Detail : 1:0, 2:3, 3:3, 4:0.89, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTATCTTAACTATAAGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: R [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.40,-0.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,9.41 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 1703-34 **** Predicted by CRISPRDetect 2.4 *** >NZ_QURG01000033.1 Aeribacillus pallidus strain W-12 scaffold33, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================= ================== 1702 29 100.0 36 ............................. CCAGCATCTGAATGTGTATTAATTTTGTTTTTCTGT 1637 29 100.0 36 ............................. TGAAATTTTTAATTTATTTATTTTATATTTAAATTA 1572 29 100.0 37 ............................. TTGACTGTTTCCAAGCTTGAAAAACAGCTGGGAAAAA 1506 29 100.0 39 ............................. ACGCCTTTTACGATTTTCACAACAAACACCGCCTTTCAA 1438 29 100.0 37 ............................. TCAGATGGTACATATAAAATTTTTGTTTCCATGAGCC 1372 29 100.0 35 ............................. TCCGTTTCAATACGAAAATGCAACTCCAAATCAAA 1308 29 100.0 39 ............................. AAATAACACCGTCTTTGTTTACTTTCAAGTCGATTTCGT 1240 29 100.0 35 ............................. ATTCTTGACCCAACTGAGATTTACAGCGGTATGTA 1176 29 100.0 37 ............................. GTTGATACTGACGCGAACAGGTATACCTACGTGGCCG 1110 29 100.0 39 ............................. TTTTAGACATGGGTTATTCCTTCAAATATGCGGCACCGA 1042 29 100.0 38 ............................. TGTCAGCTACAGAACTTAATAATTATGTGAATCTGTGG 975 29 100.0 39 ............................. TAGTCTTTTCTGTTCATCCGTGAGCCCATAGTAAAGATT 907 29 100.0 35 ............................. ATAACTGTAAGAATTGCACCGACAGCAATTAAACT 843 29 100.0 35 ............................. CAAACATGAGGAAGCAAAACCCCGTTTGCGGGTGA 779 29 100.0 35 ............................. ATTTATATAAATATATAAAGGCGCATAGGTAGAAA 715 29 100.0 35 ............................. TTCGAATCACGGTATTTCCGTGTGTTCTCGATCAC 651 29 100.0 36 ............................. AACAAATGCTTTGAAGGGATATCAAAACGCTATTTC 586 29 100.0 35 ............................. CTTGAATTACGGATTGAATCATCTGACGTAATACT 522 29 100.0 37 ............................. ACAAATTGCTGCAACTATGTAACGGTGCTGTTTACGA 456 29 100.0 36 ............................. AGGTCTGGGGGTACTAACCAAGCGAATAACATTGAC 391 29 100.0 37 ............................. AACAATCGTCGGCGACAAGATGAGAGATGCTAAAAAC 325 29 100.0 36 ............................. AAAATCATATGGTTTTCCTGGTTATGTGAATGGGAT 260 29 100.0 35 ............................. ATTTTTCAACCGATTCAACCAGACAATAAGCAAAT 196 29 100.0 39 ............................. CCACTCAAATCGCGATATTCCCGCGTGTTCTCGATCACA 128 29 100.0 37 ............................. GTTTATATTCGGCAAGTGAGGCTGTCGGAAAACTTGA 62 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ======================================= ================== 26 29 100.0 37 GTTTTATCTGAACTAAGCGGGATATAAAT # Left flank : GATTACGAGAATAATGTTGTTATAATAGATTGTATTGATTGACATAGGGTACTAGTGTTTCCAATCTTTTTTTGGGAAGGTTAGTATACATTCATTATTTTAATGAACTCAATTCATGATGATGCATGAAATGGGCTGCTGACGGCTAGTATGTATTTGTAATTTTAATGAAAAAGACTTAAATGAGACTTGTTTTCGTAGGGATATGGATCAAGATTGGAAGAGTAGCAAGGATAGACAAATATTCTTAGCCTAAGGAATGTTGTTTTTGTCAACAAGTATCAACATTATCTCAATGTTGAAGGCAAAAATCAATATTTGCAGCAAACCTATTATATGAAAAAGTGATGAAACCTTCGATGAATTCTAGGTTTCAAAGCTTTTTTTCATAGATCCCAAAACACGATTTAACCTTTACTGCAAACTGCACAAATACTTGATCTCGCAAGTTTATAAAAAAGCTTGATACTATCGTTATTTTGGCATTTTTGTTTGGTGGG # Right flank : TCAAAAAACTCCAGAACAAATTGAAATTGAGAAT # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATCTGAACTAAGCGGGATATAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:68.97%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,-0.50] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [40.0-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.27 Confidence: MEDIUM] # Array family : NA // Array 1 28479-28119 **** Predicted by CRISPRDetect 2.4 *** >NZ_QURG01000035.1 Aeribacillus pallidus strain W-12 scaffold35, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 28478 30 100.0 37 .............................. AGATAATTAACAGCATGGCTGATGATATGGATTTTGT 28411 30 100.0 36 .............................. TCGCTAAACAGATTCCCGGTTTTTTCCTCTACATTC 28345 30 100.0 37 .............................. GCCAAACGGCGATCTTTTATGAACTTCGGTGCGTTTG 28278 30 100.0 35 .............................. ATGCTTCCACAATATCGTAATGAGCCTGTTCTTCA 28213 30 96.7 36 .................G............ TCCGAATGACAATGCAATTGAACACTTACGCACCTT 28147 29 90.0 0 .................G.......-..G. | ========== ====== ====== ====== ============================== ===================================== ================== 6 30 97.8 36 GTTTTTATCTTAACTATAAGGAATTGAAAC # Left flank : TTTCGTTAAAATAAAAATAACCAGTCAAGCATTAAAAATGAAATGCTTATTTAACAACGTTTTTTGG # Right flank : CCCTGTATCTAAGAAAATATGCTAGTCTACTAATAAGTGAAGCTATGAAAGAGCGCTAGACGAATACCAAAGGAGCGCATGAAATGACGTGTAAAGAACCTAAATTTACAAAAAGTCCTTTCTTCGTTGATGAACCGGGTAACTGGCACCTAAAGCCTGGAGCGCCGGAAGACATAGTAAAAGAGTTTAATGAATATATGGAAGCCCAAAAAATGTGTGTAGAAGCTCCGAAGTTAGACGAAGCAGAGTTAGAAAAAATCCTTTCAGATCAGAGCTAAAAAAACTTTGAACGACTCTTTTTTCTACTGGCTGCTTCCCGTACAAGTATCAATAGGGTCTTGGGGCAGTTGTGATGGAAAACGCGCAGAATTTCACATTCAGCGCTGTAAAGCAGCTGGTTTAATCTTAACGAAGCTTTGGCATTGTCAGGGAAACACATCATTTAAATCGGTGTGTATTCTTTCACAATACATTAACAAATCCTTCGGGTAAGAAATGTT # Questionable array : NO Score: 9.15 # Score Detail : 1:0, 2:3, 3:3, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTATCTTAACTATAAGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.67%AT] # Reference repeat match prediction: R [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.40,-0.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [63.3-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,9.68 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 8189-7956 **** Predicted by CRISPRDetect 2.4 *** >NZ_QURG01000041.1 Aeribacillus pallidus strain W-12 scaffold41, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 8188 30 100.0 38 .............................. ACGTTAATGCATCCACAATGGCTTTTAAATGCATTCTT 8120 30 100.0 38 .............................. CATATTGTGCCAAATCGATAAATTGACGACGGATTTCA 8052 30 100.0 37 .............................. TTTTCAAAGTCGATGTCATCCCATGTCAACGCCAACG 7985 30 96.7 0 ................C............. | ========== ====== ====== ====== ============================== ====================================== ================== 4 30 99.2 38 GTTTTTATCTTAACTATGAGGAATTGAAGC # Left flank : AGCTCTGCCTTTGTGCGGAGAAAAAGGGGTTGGTTTGCTTATTTTTAAGGGAACCTATAATAGATATAGATAATGTAAAAAATAAAGGGTGAATCTGCCAACTTTTTTCTTAAATCGAATTCGATAAGGAATGTTTCCTCGTATTTTTATCCCATCGCCATGCGTTTGACCTTTTTCTGTCATTTCATGAAGGATGGACAGGTTTCGGTAAGTATGCCATTCTTTATTTGGAGGCCGGAATTGTAATTAAGTAAGAGGTGTTAAATCAAGTTCCAAATGATAGAATTGTTGATCGGTACACGTGGAACACCTGTTTTAAACATAATAAAATTTGTCGTAGATCTCCAATCGTGCAAAAATCTCAGGGGATCGACGACTCTTTCAAATCTTCATTGAGCCCATGCAAATCAAAGGATTGATAAAATGTACCTCCTTCGCTAAAATGAAAATAACTAATCAACCACTTTAAACCAAATACATATCTAACAACCATTTTTGGG # Right flank : CCTGTTGTGGATGGCGCAATTTCCGCCCAAAATATGCTTTTATTTTAAACTATGAAGAAAAACTTTAAACAAAAAAGCACGGCCAATGTGAAGTGAGCCATGTCAAGTAGACAGGAACATTTTATCCATCTTTCAGAATTGAAGTATTTTCATGATATACAAGCTATACTTTTTCAAGAAAAAGAAATCACATATCTATTTTTATAGCGATCATTTCTACAATCCAGCAGGAAATTATGCACAGACTTGTGAAAGATAATGGCCAATCTTATAAAAAATGTATTCAAAAGTGATAGCTTCAAAACTATGAAATTCGTAAGTAAAAGAAAGCGAAAGAATGGAACACCATAAAAGACGAGGAAGCTCGTCCGGATCGTACCAATCGGGAAGAAAGAAGTTAAACTGCAGCCAATCGAATGCTAGACGAAAAAAACTGTAGAGCGCATATGAATCCATATTCAAAAATCCTTCAACGCTTAAATGTTTCATTTCCGACGAAG # Questionable array : NO Score: 5.82 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTATCTTAACTATGAGGAATTGAAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.00%AT] # Reference repeat match prediction: R [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,-0.60] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [63.3-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.18 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 61-2135 **** Predicted by CRISPRDetect 2.4 *** >NZ_QURG01000061.1 Aeribacillus pallidus strain W-12 scaffold61, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================================================================================== ================== 61 29 100.0 35 ............................. TAAAATATCGTACGCACGGCTGTTTGTGGGTTGAT 125 29 100.0 38 ............................. TCGCCATCGATAACACCAGCCGGCGTGTTGTATCCTTC 192 29 100.0 35 ............................. GTAGAATCGGCGTTCCGGTTCCGGGCGCGCTCAAA 256 29 100.0 37 ............................. AACCCTTATATGACGAGTTCAACTTTTTGGTCGACAG 322 29 100.0 39 ............................. TACGTCGATTCGGCGGGGGAATATTTAGGGCGGCTAAAA 390 29 100.0 37 ............................. TAGTAGTTCTTAGTATTAAACCTTCTACACCATATAC 456 29 100.0 36 ............................. GGACAAAAGGCAGTTTTGGATGCAATCAAACAAAAG 521 29 100.0 37 ............................. TTGGAAACGCTATGGAAGGCGTTAGAAAGGCAGTACA 587 29 100.0 38 ............................. TGGGAAACAATTATTCTTTCCACAACTGACATTACTGA 654 29 100.0 36 ............................. ATGAAATCAAGAATATAACAGCCTTACGGAAGAACC 719 29 100.0 36 ............................. AAACATTTTATCATTCTCACGAAGAAATTCAACATT 784 29 100.0 36 ............................. TTGGGATTCTAATGCGAAAGCAGGTAGAGCATCAAG 849 29 100.0 36 ............................. TTATATTAACTCACCAGGCGGCAGCGTCTTCGAAGG 914 29 100.0 35 ............................. AGAACGTTTCTTGTAGGGGAGGTGAGTGTTTTTGA 978 29 100.0 37 ............................. GATCAAGTCTTTGCCGAATTCAACCTCACGTCCACGC 1044 29 100.0 38 ............................. AACGTTTTGAAGCGTTGGAACGGAAGCGCATGGGTAAA 1111 29 100.0 36 ............................. GGTTGATCGGCTTTTGAGGTTGCCGTGAAAACCCAG 1176 29 100.0 35 ............................. AACATCTAGCAAAGAGAAATCGTATCATCATTCCC 1240 29 100.0 37 ............................. TTTTTGCGGGCAGGAAAAGCAATTGTTTCCCTGCCAC 1306 29 100.0 35 ............................. AATGAGTCAGCAAATTAAAAAGCGCAGGACATTTC 1370 29 96.6 55 .................T........... ATCGGTACAGGAATGATTTTANTGCGGGCAGGAAAAGCAATTGTTTCCCTGCCAC 1454 29 100.0 35 ............................. AATGAGTCAGCAAATTAAAAAGCGCAGGACATTTC 1518 29 96.6 36 .................T........... AAAGATCTCTGCGATCGGTTCGAAAATGCAAAAATC 1583 29 96.6 36 .................T........... TCTGTCGAAATGAGTAGGCGGAGGGAGGTGAAAAAA 1648 29 96.6 35 .................T........... AACGGTACAGGAATGATTTTACCCGCGTTCTTCGA 1712 29 96.6 35 .................T........... CGAAAACGCCGGTAGAATCGGTGTTCCGGTTCCGG 1776 29 93.1 43 .................T..........G ATTAATCTTNCGGTACAGGAATGATTTTACCCGCGTTCTTCGA 1848 29 96.6 35 .................T........... CGAAAACGCCGGTAGAATCGGTGTTCCGGTTCCGG 1912 29 93.1 38 .................T..........G ATTAATCTTCTAAGAAAAGAAATGTCTGATCAGTGTGA 1979 29 93.1 98 .................T..........G TTTTTTCCGTTAGAACCGAAATAAAAAGTAGATTTGTTTTATCACTAAGTTGGATATAAATAAGGGGAACTTGAACGTATTCGGACAGGCTGGAAATG 2106 29 82.8 0 ...G....AA.......T..........C | C [2131] ========== ====== ====== ====== ============================= ================================================================================================== ================== 31 29 98.1 39 GTTTTATCTGAACTAAGCGGGATATAAAT # Left flank : TATCTGAACTAAGCGGGATATAAATGGCCATATTGATGCTGGCAACGCATCAGAAAGGGGG # Right flank : CCGCTAAGGCTAATTTAAGCGTTAATCATTTCATAAGCAGGCAACACGAATATAACGGAAAAGCTGGAGAAGAACAGTGCCTGCTTTCTTAAATTTTGTTTTATACTAGCTTGTCTCAATGATGGTTTCCATCTTCAAAGGACGGGTCAGTGCTTACTCTTTCTCATAAATCATTTGTACAAATGTGTGATTCTTTTTAATGAAAATATTTTTGTAAAGGTTTAAAATGAAACATATACTAGTGCTTTTGTCATAATGCAAGAGAAATTAGCATTGCATGAATCAGAGGCTGGTTTAGGGGGAGTTTCCAATGGCTTGTAAAAGCGGTGAGACGATAATGAATATAAGCTTCTAAAGGTAAAATATTTTATCTATTTGGTTAGCATTCGGCTTGCTTCTTATTCGTGATGCCATTCGGAAAGATTTTATATTGCATTTTTCCCGAAATGGTTGTTTTTATATTTTAGTCGGTGCTAAAAATAGAAAGATTTTTGGTTATG # Questionable array : NO Score: 2.96 # Score Detail : 1:0, 2:0, 3:0, 4:0.90, 5:0, 6:0.25, 7:-0.19, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATCTGAACTAAGCGGGATATAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:68.97%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.50,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [55.0-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA //