Array 1 57054-59593 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAEUXF010000008.1 Streptococcus suis strain HN108 Scaffold8, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 57054 32 100.0 34 ................................ AGGGTTCCACCAATTTGTTCAGGAGCAACTAATG 57120 32 100.0 34 ................................ TAAATTAAAACAAGATTCTAATTCAAAGAAAATT 57186 32 100.0 33 ................................ ACAAATTATTGATAAAATAAAATCAAATATTTT 57251 32 100.0 33 ................................ ATTACTCTACATCCAAAACCGTCACTCTCAATA 57316 32 100.0 33 ................................ AATGTAAAAACATCCATCCCTGTAAACCACTAT 57381 32 100.0 35 ................................ ACAAAATGAGGTAATAAAATAGAATGGAATATACA 57448 32 100.0 34 ................................ GGAATGAGTATCAATTCAAGATTGTGGTTAATGT 57514 32 100.0 34 ................................ ATCTTTGATTAATAATTATCTTGATGAACCTCAA 57580 32 100.0 34 ................................ AAGATTTTAATATACCAATATCTTACGATATAGA 57646 32 100.0 34 ................................ ATTTGTGTATTTACTGTCCACATATCTAAATTAC 57712 32 100.0 34 ................................ CAACTAAAACAATTTATTTTACACCTTTAAATTC 57778 32 100.0 34 ................................ TATCTGATGATGATGATTATATAATAAAACACCC 57844 32 100.0 35 ................................ AAGGCTCTTGAAACATGGATAGCAGCTGCGCGACT 57911 32 100.0 34 ................................ AACGTCGAATCTAAAGACGAAAGTGAGAAATACC 57977 32 100.0 34 ................................ GTAGTCGGAAGATAAAAGTCCGAACACATCTCCA 58043 32 100.0 34 ................................ AACTAGGTCAGACGGTAAAACAACAACATATTTT 58109 32 100.0 34 ................................ CGCTTATAAAGTTGGTATCGCTATGAGCGGACCA 58175 32 100.0 34 ................................ TAACCAATCCCCTCTAAAAATTCATTTAGTTTAA 58241 32 100.0 36 ................................ AATTATTCAACAAGCTAAAATAAACACAATTTTAAA 58309 32 100.0 34 ................................ ATGCACTGCTTGGTATTTAATAACAAAGGCATTG 58375 32 100.0 34 ................................ TTTAATATCCTTATCGATGACTGTGACGGCAATT 58441 32 100.0 34 ................................ CAGTACAGCTGCAAACAAAGTCCTGAAAAAGAAA 58507 32 100.0 32 ................................ AGGCAATACATTTGTGACCCTTGGTAGATACG 58571 32 100.0 35 ................................ TTGGTATAGCTTATCGTATTGCTGACGTCGTTAAA 58638 32 100.0 35 ................................ AACCGTGGGAGGTATAACATGACGACATCACATTT 58705 32 100.0 34 ................................ AACAGGCAGTTAACACCGTTAAAAAATGGAGGGA 58771 32 96.9 35 ....T........................... TATTTCCAAGAATGACCGAGATGCTGAACTTGCCT 58838 32 100.0 33 ................................ AAAGACATCAATGTTGGTAATGCGACGATTAAG 58903 32 100.0 34 ................................ TTTAGGATTGACCAGCGTATCGTTGACCTGCATG 58969 32 100.0 36 ................................ AAGAGAGAGTCTGGATTTCCATAACGTCGATATAAA 59037 32 100.0 34 ................................ TCCTGGAATCAGCGTCCTAGCTGCAGTATTTCCG 59103 32 100.0 34 ................................ TCCTTTGATTAAGCTAAAATTGTGATGTTGTCTT 59169 32 100.0 35 ................................ TTTGTTTGCTAATTCAACTGCATACTCCAAAGCAT 59236 32 100.0 34 ................................ TCCTAATTTTTCAACAACTATCCCATGTTGTTCA 59302 32 100.0 33 ................................ AGTCTGATAAGCACGCTATCGCATGGCATATTC 59367 32 93.8 34 .............T........A......... AACGTATCGACAGACTACCTGCTCGGACGGACCG 59433 32 87.5 33 .......T..T...AA................ AGGGCATTGAGCTGTTCTTGGGTCAATGCTTGG 59498 32 84.4 32 .......T..T....A.....C..G....... TGGACGGAACTATGGAAACACCAGGCACATCG 59562 32 68.8 0 ....T..T..TTG..TA.A...A.G....... | ========== ====== ====== ====== ================================ ==================================== ================== 39 32 98.2 34 GTCGCACCCTACACGGGTGCGTGGATTGAAAT # Left flank : CAAAAGCTATTCGAGGCGAGTTGGATAGCTATCCTCCCTTTATGATATAGGGGCTATATTATGATGGTATTAGTGACCTATGATGTCAATACAGAGACAGCAGCTGGACGAAAGCGGTTGAGAAAAGTAGCTAAGCTGTGCGTTGACTTTGGTCAACGTGTGCAACATTCTGTTTTCGAATGTTCAGTCACTCCAGCAGAATTTGTTGAAGTAAAGAATAGATTATTGGAAATCATTGACAAGGAACAGGACAGTATCCGCTTTTATATGCTAGGAAAAAACTGGCAAAATCGTGTGGAAACGATTGGGCGAGATACTAGTTATGATCCAGATCAAGGAGTTCTTCTGTTATAGATTATCTATGCGAATCGGACTTACTCATTAAATGTGAGGAGATTCGCGTGAAAAGCATATGAAAAAAAGTGAAAATAGAGTGAATTTATGGTATATTCTATATTTGTAGAAACTTTATTTTTTACAAAACAGTGTCAAAAGGCACT # Right flank : TTGTTTTTTGCTTAACACAGTATATCTGGTATGGACGTGTTCGAAGTTTCCCTCCTTTAACTCATCTCCCCCACAATTTTCTAAAATTCTTGTTTTGTCTTGCTTGCTTCATGCTATAATAGTTGTATCAGTTTTTTAAAAGGAGACAAAGATGACAAACCTAAAAGAGCAGGTTGGGATTAAGGCGGCGGAGTTCGTGACGGACGGGATGATTGTTGGGCTGGGAACTGGTTCGACGGCATACTATTTCGTGCAGGAGATTGGTCGCCGGGTTGCAGAAGAAGGGCTACAGATCACAGGCGTAACGACCTCTCATGCTACGGCAGAACATGCTGCGTCCCTTGGGATTCCCCTAAAAAATATCGACGAAGTCGAATACGTAGACTTGACGGTGGATGGGGCTGACGAGGTGGATGGTGCCTTCAATGGTATAAAGGGTGGCGGTGCTGCACTGCTCATGGAGAAAGTGGTAGCAGTCAATAGCAAGGACTGCATCTGGA # Questionable array : NO Score: 9.17 # Score Detail : 1:0, 2:3, 3:3, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCCTACACGGGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [7,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACCCTTCGCGGGTGCGTGGATTGAAAT with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-4.90,-6.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-22] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [75.0-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.68,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //