Array 1 4668-4902 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAKEA010000002.1 Adlercreutzia sp. ZJ138 Scaffold2_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 4668 36 75.0 30 C...CTTGGGGC........................ AATAAAGCAATGCGGACACGTCCTCGCTGT 4734 36 100.0 30 .................................... GCCTGAGCGTAGTTTCCATCAGTCGCCATT 4800 36 100.0 31 .................................... GCCTGTCCGGTAGATACTGGCAGATTGCGCA 4867 36 97.2 0 ......T............................. | ========== ====== ====== ====== ==================================== =============================== ================== 4 36 93.0 31 GTTTGAGTACCAGTCAGAATGTCACTGCTCCAAAAC # Left flank : CCGTGTTCCGGCTTGTTTCCGAATGTTGGTTCGGGGAATACTTGGTCATGCATTGCCCGGTGCTCCATTTCTGCTTGGAGCCAGTCGGCAGTCGTCTCACACACTTCGCGAAAGTTTGCACCCTGGGTGCCACCATCCATGTCATAAGGGAAGGCAAGAAACAACCCATCATCTTCAAAGACTTCAAACTCGTATACGTAAAGCATCTCTATGCTCCTTTCATATCGCTGTGAGGGGCTATTTGAGACCTGCTTGCTTCTTCATTTCATCGAAGAGATTATTGCTGATTTCCTTGTGTCTTCCGAGCGTTGTCCATCTTCCATCTGGGTGAACCAGCTTGTCGTGGTTGGTGCCGCCCTCATTGATGAACCCATGCTCTTTAAAGAACAGCTCATCCTGCCTTCTTTTGACCACCTGTTTTCCTCTCATTATATACGTTAATCCTAAACATTTATTTATAATTTATCAAGCTCGCACTAAGCTAATAATTAGCAGTATCG # Right flank : CTGTCCAATGACTGTAGTGCTATACGAGGTCTCATGGCTACACGGCGTATCACTACCTTCGATACCACCTTGCGCGATGGCGAGCAGTGTGAGGGGGTCAATTTGTCGCTCGGGGACAAGCTGGCTATTGTGCGACGGCTCGATGAATTCGGCATCGACATTATCGAAGGTGGCTTTCCTGCCTCGAACCCCAAGGATGTGGCGTTCTTTCAGGAAGTGGCTGCTATGGGGCTTACCCATGCGCGTATTGCTGCTTTTGGCTCCACCTGTAAAAAGGGAGTGGCAGCCACTGACGATCTTGAATTGGCCGATTTGCTGGTTTGCGAGGCACCGGTGGTAACTATCGTCGGGAAAACGTGGGATGCTCAGGTGGAGCGCGCTTTGCAGACCACGCTCGATGAGAATCTGCGTATGATTGCCGATTCGGTGGCGTTTCTTGCAGCCGCCGGGCGACAGGTGGTGTTCGATGCTGAACACTTCTTCGACGGTTATCGGGCGAA # Questionable array : NO Score: 5.51 # Score Detail : 1:0, 2:3, 3:0, 4:0.65, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGAGTACCAGTCAGAATGTCACTGCTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:54.17%AT] # Reference repeat match prediction: F [matched GTTGGATTACCAGTCAGAACGACACTGCTCCAAAAC with 92% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [65.0-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.77,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 1798-441 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAKEA010000026.1 Adlercreutzia sp. ZJ138 Scaffold25_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 1797 36 100.0 30 .................................... TGCCGGATTCTCCTATCGCTAAGCATGCTA 1731 36 100.0 30 .................................... CCTGTGTCTGTGCCTCTGATATGGCCCTCT 1665 36 100.0 30 .................................... CGACTCAACGAGGTTATCGGTATACGTTCC 1599 36 100.0 30 .................................... CGAAGAAGACGGCTACACCACGTACCGCAG 1533 36 100.0 31 .................................... CACTTTTCCGCCATATTGTGTATAACTCAAG 1466 36 100.0 30 .................................... TGATCTGCTTTACCTGACCAAAACTTATCA 1400 36 100.0 30 .................................... TGCTGTTTGAAGGCGATATTATGTATTGCA 1334 36 100.0 30 .................................... GCCGCCTTGCCAAGGTTGCCCGATACAGCA 1268 36 100.0 30 .................................... AAGCACGAAGAGATAACTATTCCTAAGAAA 1202 36 100.0 30 .................................... TCTTCCATGCCGAAGCTCTCACGCATGTAC 1136 36 100.0 30 .................................... CCAGGCGTTGCGTGACGAAAATCAGGCACT 1070 36 100.0 30 .................................... TGTACAAAAAGATACAGGGTTGAAACCGAT 1004 36 100.0 30 .................................... CATATGCAAGCTCGAAGGGTGGGACTATCG 938 36 100.0 30 .................................... AGTGAGTTGATCTGTATTGCCGTACCGCCT 872 36 100.0 30 .................................... TGTTTCATGGCTTATTCTGATGGCAAACAT 806 36 100.0 30 .................................... AATTCGCTTTTACGGACGCTTGCGGCTTCT 740 36 100.0 30 .................................... TCCCTCCGTCTTAGGCACTCCACATTCAGC 674 36 100.0 30 .................................... AGTTCTTCAAAAACTGCGACAAGCTCGAAG 608 36 100.0 30 .................................... CTCCCCATTTTGGATACTACGAAGGGCAAT 542 36 100.0 30 .................................... TGAGCGAAAGCGATTTGCGTCGCAAAAGAA 476 36 97.2 0 .............................A...... | ========== ====== ====== ====== ==================================== =============================== ================== 21 36 99.9 30 GTTTTGGAGCAGTGACATTCTGACTGGTACTCAAAC # Left flank : GCTATTTAGCAGTTTGTATGCAAAAACGGTTGGGTTCGCACATGAGGATGATGAGCTGAGGGGACGAATAGAAGAGCTGGGATCTCAGCTTAGAATGGTGATATCTAAGCTGGGGTTTCAAATGCAAGGTGACTACGCTTTCGAGGTAGAATGGGATCTGCCCACATTTCTTAAGGCGTTTAACTTCAATATTGAGGTGCCTGAGAATGCTTCGCTCTTTGATAATCTTATGTGCTTTGTTGAGTATGTAGCTGATATGGGTTTTGACGGGGTACTTCTTTTCATCAATTTGCATACCTTTTTGGCCGAGAATGAGCTCGAATCCTTCTATGAACACGTGCTTTTTCTTGGAATTAAGGTGCTGGTATTAGAGGGAGGTTCTTCTTGTTCGGTATACTGCAAAGAAAGAAAACTGCTTATTGATCAGCGATTTCTTGAGACTTTGCTGATCGGACAGTCAGATCGTACGCCTTCTACGCAGGGAAGGATTTGCTTCAACG # Right flank : CTGCGCAATCTGCCAGTATCTACCGGACAGGCGTTTTGGAGCAGTGACATTCTGACGCCCCAAGAAAGCGATACTGCTAATTATTAGCTTAGTGCGAGCTTGATAAATTATAAATAAATGTTTAGAATATACGTATGTAATGAGAGGAAAACAGGTGGTCAAAAGAAGGCAGGTTGAGCTGTTCTTTAAAGAGCATGGGTTCATCAATGAGGGCGGCACCAACCACGACAAACTGGTTCACCCAGATGGAAGATGGACAACGCTCGGAAGACACAAGGAAATCAGCAATAAGCTCTTCGATGAAATGAAGAAGTAAGCAGGTCTCAAATAGCCCCTCACAGCGATATGAAAGGAGCATAGAGATGCTTTACGTATACGAGTTTGAAGTCTTTGAAGATGATGGGTTGTTTCTTGCCTTCCCTTATGACATGGATGGTGGCA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTGGAGCAGTGACATTCTGACTGGTACTCAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.10,-2.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [43.3-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA // Array 1 63145-63973 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAKEA010000003.1 Adlercreutzia sp. ZJ138 Scaffold3_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ================================================================================================================================================================== ================== 63145 36 88.9 162 T.........................AC...T.... AAGGGGCCTGCTTCGCAGGTACCCGCAAGGTAAAGCCCCGTTCGCGGGGCTTCCTTTTTCAAAAAACTTGAGATTAAGGATATTTTACAACCGTGTGTTATAGTTTTGCACGTACCACAACAATAAAAAACGCCCTTTCAAAGGGCGTTTTTTATTGTTGGC ACA [63170] 63346 36 100.0 30 .................................... CAAGCTCATCGACCGGCTTTAGCGCAGCGG 63412 36 100.0 30 .................................... CGAGTCTGTAATATATTCAGTTTCACCAAA 63478 36 100.0 30 .................................... ATACGCCGGACGTTTTTGATACCGCTGCAA 63544 36 100.0 30 .................................... CCCGTATTCATCTACGGACTTAACAGGACG 63610 36 100.0 30 .................................... CCTGACCCATCAGGCACCAGGCGACACGTC 63676 36 100.0 30 .................................... GGACGCTGATATTATCGCGTTGCCTGATGG 63742 36 100.0 30 .................................... AACGACGGAATAACAACGCCCATTTCCGTA 63808 36 100.0 29 .................................... TACCCATCAGTTATGTTTGCAGCACATGG 63873 36 100.0 29 .................................... GGGTGCGCATTCGATGATTAACGCGCGTA 63938 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ================================================================================================================================================================== ================== 11 36 99.0 43 ATTATACCAAATGGGGATTTGAGTGGGTGCCAAGAC # Left flank : CAGACTCTCTACCAGAGGAATCCCCCGATTTCACCTCCTTGGCATACTTTCGAACATCTTCACAACCTTCCAGACCCAGTATTTCCAAGCATTGCGCTTGGTTGAGAATCTTTTGTTCTACGATCGCCTTCCACAGTTGCTTTGCGAGGGGTTTCGAAATAAGAAGCTGATCCTCCACAATAGCAGCATGTCTGGAATGAGCACCAAGAGGCAATTGAAGAGCGACGGGCATATGACCCCCATCACATACCAAAACCCCTATCCCTTCTTCTGCCATCGCTGCAAGCAGAGCGGTTGACACTACTACCTCATTGCTCTCTAAAACAAGAACCCAGATATCCTCCAGAGGAATGCTTGTCTGAACGCCTCGCTGGTCCACCAGCAATTGATTATTCTTGCAGAAAAGCTTGGCGGGATTCTGTAAACAAATGGTTCTTTTTGACATGGGGGACAACCTCTTTTCACTTGGGAATATCAATTGTATAATGTCCACCTAGGCA # Right flank : CCGAGTCTGTTTGCAGCTGTGCAACCGGTACGTGCAGAGCAGCGCGAGAAATGTGCCCCCAGTTTCATTGGTATAAAACCGATACCACTCTATAAACCCAGCAAGTCCACGCGATCTAATTCACGTCAACCTGTAAGACGGAGACACCAGCCTTTCTGAAAGAGTCGAACCCCTGGAAGAACGGCAAACGCCCTTTGATGCAAAAGTAACTATCCCACAGCCTTTGCTAACTCGGGCACCTCCAGCGGCGCCACCTTTTTGATGTCTTCGCTGTGTAGTTCCATCGAGTTCCACAGATCAACCTTCTGCTGCATGTTCATCCAGAACTGCGGAGTGGTGCCGAACAACCGCCCTAGTCGTAGACACATCTCAGGACTCAGACCCCGCTTCTCACGAATGATCTCGTTCACCGTCTGACGCGTAACACCAAGCCGCTTTGCCAACCCTGCCACACTCAAACCAAGTTCCGGCATGTAATCTTCCCGAAGAAACTCGCCAGG # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTATACCAAATGGGGATTTGAGTGGGTGCCAAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-2.90,-1.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [60.0-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.64,0 Confidence: HIGH] # Array family : NA //