Array 1 565-1 **** Predicted by CRISPRDetect 2.4 *** >NZ_MAWD01000022.1 Streptococcus agalactiae strain ATL-58 NODE_2_length_277649_cov_78.247_ID_3, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 564 36 100.0 30 .................................... ACGATGTTTGTGAAAGACAAAATCTTCGCT 498 36 100.0 30 .................................... GTTGATCTTATTCACGTTTCGTGAAGTTTA 432 36 100.0 30 .................................... CAGAAAAAATCATGGCGAGAGCCTTGCTCA 366 36 100.0 30 .................................... ATTAATATTGGTCAGAATAAGCTATTTCAG 300 36 100.0 30 .................................... GATATTTGGAAAGATTCTGATTTTGGTAAG 234 36 100.0 30 .................................... TTACCGAAAGAGTGGAAAAACTACTCAGTG 168 36 100.0 30 .................................... ATCCATTCCTACAGGAATCACTCAAAATAT 102 36 100.0 30 .................................... AGCGGATGTCAATAGATTTCTACGAACAAG 36 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 9 36 100.0 30 GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC # Left flank : CGAAAAGCCAGAAGTGAAATCAATGGTAGAAAAATTAGCAGCTACTATTACAGAACTTATCGCATTTGAGTGTCTAGAGAATGAGCTTGATTTAGAATACGATGAAATTACGATTTTAGAACTCATTAAGGCACTGGGAGTCAAAATTGAGACACAGAGCGACACTATCTTTGAAAAATGTTTTGAAATTATACAAGTTTACCATTATTTAACGAAAAAGAATCTCTTGGTTTTTGTTAATAGCGGAGCTTATCTTACCAAAGATGAAGTTATAAAATTATGTGAATACATCAATTTAATGCAAAAGTCAGTACTCTTTCTAGAACCTAGAAGACTCTATGATTTACCGCAATATGTTATTGATAAGGATTATTTCTTGATAGGCGAAAATATGGTATAATATTAGTAAAAGCACAGTAATAACAAGGAATCATCGAAACTGAAGTCCTGCTGAGACGAATGGCGCGATTACGAAAGCTCAAAAGAAAATTTTCTACGAG # Right flank : C # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.20,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.87 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 1 1-1026 **** Predicted by CRISPRDetect 2.4 *** >NZ_MAWD01000010.1 Streptococcus agalactiae strain ATL-58 NODE_19_length_44758_cov_75.5163_ID_37, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 1 36 100.0 30 .................................... CATGCTTGCTGTTGTAAATTGCCCGACTGT 67 36 100.0 30 .................................... ATCAACTGCTAGATACGATAACACGACAAC 133 36 100.0 30 .................................... TACCACCTGATGGATTATCAAGTGATAAAT 199 36 100.0 30 .................................... TAACTTTAATTCGATTATGTTTTGGTTATC 265 36 100.0 30 .................................... GTAAGTATTTTAAACGTGACTATTCCTGAA 331 36 100.0 30 .................................... TTTTTATTATGGAAAGTAATCATTATTTTT 397 36 100.0 30 .................................... TTCTTTAATACCTGAAATCATTGCGTTGTA 463 36 100.0 30 .................................... TTGTAATATTTGGTAACTCTTCTTTTGTTA 529 36 100.0 30 .................................... TCCGACCATGTCAGTCCAACGGTATTTTGT 595 36 100.0 30 .................................... TTCTTTAATACCTGAAATCATTGCGTTGTA 661 36 100.0 30 .................................... AGGGAGGAGAGAATCAATGCCGAATGCTGA 727 36 100.0 30 .................................... TGGCGAAAAATGGTATTATCTCAAAGGCAA 793 36 100.0 30 .................................... TTTTTACCAATGCTTCCATATCGCTTATAT 859 36 100.0 30 .................................... TACTTGACGAATTGAAGATGACGGAATTTA 925 36 100.0 30 .................................... TGGTTATACATTTACTAATCCATCAGCATT 991 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 16 36 100.0 30 GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC # Left flank : | # Right flank : CAAGCTAATTCTCATCTCACCGAGATGGATAGTTTTAGAGCTGTGCTGTTATTATGCTAGGACATCATTGTGGTGTTCTAGTTTTTTGTTATACTGAAATAAATTTTCAGAGAATGTGGGGGAAGGCGGTAATTAGATTAATTCAAGACGTAATTCAGAACTTAGTTGGCCAAGCTAACGAAATCACCCCAATTTATCAGTTTGATTGGGAAACTTATATATTGGCGACTAAAAAATATGAACGTCATTTAGAGGTGTGTCTATTAGTAGAAAATTCGAATTGTTTTTCGGATTCAAAGAGAATGTGTCAATAAAAGAGATATGAAAGGCTATAATTCCAACCTTATGGTTAAAGGGCTAGGTTGTTCTACGCTTTACTTAATTATTAGTTTGACAGCGTTGGTTCTTTTAGTGATTGCTGGTGTTTTCTTTGTCATTAATACTTGCAAGCTTACAAGGAAAGCAGTGGAGAACCTATCCATAATCAACTAACAGCTATG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: F [matched GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.70,-0.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //