Array 1 219373-218426 **** Predicted by CRISPRDetect 2.4 *** >NZ_MEJW01000024.1 Salmonella enterica subsp. enterica serovar Oranienburg strain CFSAN039532 scaffold_3, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 219372 29 89.7 32 AC..A........................ GTGTTTTCTGCCGTCCACCGCGTGGATGGACA G [219365] 219310 29 100.0 32 ............................. TGACGCTCGGTGATTCAGGGGCAACCATTGCG 219249 29 100.0 32 ............................. GCCAGGCCGGGATCGGTGGGGTTATCGACGAG 219188 29 96.6 32 ............................C ACGGCATCATCAACCGAGACAAGCCCCAACTC 219127 29 100.0 32 ............................. ACCGAGAACGTTCTACCTTTGATTACCTTCCC 219066 29 100.0 32 ............................. GACGCGTTAACTGGCCTGCGTGATGCTATCGA 219005 29 100.0 32 ............................. AATTATTTATCAGTCCCATAGTTGTGTCTCTT 218944 29 100.0 32 ............................. CACTCCGCGCCGCTGGCATCCATGTTATCGAA 218883 29 100.0 32 ............................. AAAATTATCGAGGATGAATTTAAAACAGGTGC 218822 29 100.0 32 ............................. ATTTGCCCCTCATCTTTCGCCCTTAAGCCGGG 218761 29 100.0 32 ............................. GTACGGAAATTGTAAGCCCCTGGATTCACAGT 218700 29 100.0 32 ............................. CTCCAGCAGTTGGGCATCAACAGGAGAAACGG 218639 29 100.0 32 ............................. GCAGCGCCGGTGTGGCACTTGCATGAATCGTT 218578 29 100.0 32 ............................. GCCGATATGGCTAAAACGGCGCTTGAGAACAG 218517 29 100.0 33 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAAA 218455 29 86.2 0 TAA.........T................ | A [218428] ========== ====== ====== ====== ============================= ================================= ================== 16 29 98.3 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CATTACTGGCGAAGCAATACGGCGTGAAGTGGCATGGTCGTAACTATGATCCGAAAGACTGGGAGAAGGGGGATGTCGTCAACCGATGTATTAGCGCGGCAACATCGTGCCTGTACGGGATTTCAGAAGCGGCTATCCTGGCGGCGGGATATGCGCCGGCTATCGGTTTTATCCATAGCGGTAAGCCGCTTTCTTTTGTTTATGACATTGCCGATATCATCAAATTTGAATCGGTGGTGCCCAAAGCATTTGAGATCGCTGCTCGTCACCCGGCGGAACCAGATAAAGAAGTGCGCCTGGCCTGCCGTGATATTTTTCGTAGTTCGAAGCTGACCGGAAAATTGATCCCACTGATCGAAGAGGTACTCGCTGCCGGTGAAATTGAACCGCCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAA # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACTTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGCGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGTTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGTGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [5-5] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [50.0-45.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.24 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 235725-235148 **** Predicted by CRISPRDetect 2.4 *** >NZ_MEJW01000024.1 Salmonella enterica subsp. enterica serovar Oranienburg strain CFSAN039532 scaffold_3, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 235724 29 100.0 32 ............................. ATTATGGACGACAGCTATATGAAAACGCATTG 235663 29 100.0 32 ............................. GCAATTAATAACAGAAAATAAATAGCGAGGAA 235602 29 100.0 32 ............................. GCGAGATTAAAGCGGGCTAACTATTTGTGAGA 235541 29 100.0 32 ............................. TGCGCAGATTCCGAACCGCTTACGATGAAGTG 235480 29 100.0 32 ............................. TTTGCCTGGGCTGGTTCGCCGAAAACGGCGCG 235419 29 100.0 32 ............................. GCTGCTCTCTCACGGGGGTGGCCTTTTTTATT 235358 29 100.0 32 ............................. CGAGCCCAAATAAGCCGCCAGGCGTCGCGAGA 235297 29 100.0 32 ............................. CCGGTGCTAAGTGGGTGCGTCTGCGTGATTTT 235236 29 100.0 32 ............................. CCATACCATTTCCACTGGCGCAACGATTTTTG 235175 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================ ================== 10 29 98.3 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGTGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGCTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGTTTGTCGATGCAAACACATAAATATTTAAATATCGCCTGATGCATTACTAATCCTACGGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCACTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTGGTGCTGATAAAAAGTATTTTATAAACAATGATATACGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCTGGTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTTCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGACCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCATGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGGAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCTCTGCCGATTGGC # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //