Array 1 164030-161865 **** Predicted by CRISPRDetect 2.4 *** >NZ_QYVK01000004.1 Salmonella enterica subsp. enterica serovar Montevideo strain 10TTU271b NODE_4_length_187613_cov_16.1815, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 164029 29 100.0 32 ............................. CCCTGGTTAATGATGGTTGTCAGCTTAGCCAG 163968 29 100.0 32 ............................. GTGGCAGCTGAGAACCCGGAGGTTATCCGGTG 163907 29 100.0 32 ............................. GTGCCGTGTTTGAAATTCCCAACGATACGTTG 163846 29 100.0 32 ............................. GCGCGGCTCGCATGTCAAAAATTGTCGATACT 163785 29 100.0 32 ............................. TGGCAAACGAAAGGCCATGTTGGCATAAGTAG 163724 29 100.0 32 ............................. ACGTATTACGTTTATGTCCGCACCAAAAATGC 163663 29 100.0 32 ............................. AGACATCAATTACTCAGGACGGGATGATGTTT 163602 29 100.0 32 ............................. TATGCTGAATTACAGGAAGGCAGGAAGTACGC 163541 29 96.6 32 ............................T TACCTGGTTGAATTCGGTCTGACTCCGGCCGC 163480 29 100.0 32 ............................. GCGCCCGCGGCGATTTAGCATAATCTGCAGTT 163419 29 100.0 32 ............................. GAGGGGGTTTCTTCATCGTCTGATGAAAACGG 163358 29 100.0 32 ............................. TCGGATGCATTGGGAGCGGGATTGCCGGAGCC 163297 29 100.0 32 ............................. GCTTCCCAACCTACCTGGAGCCAGGCGCGTTC 163236 29 100.0 32 ............................. CGGGCGCGGTCGAGAAACCATGCCTGCTGATA 163175 29 100.0 32 ............................. CCATATACAGTGGCGAAATTCCTTTTCCTCTT 163114 29 100.0 32 ............................. CGCAGGCAACGCTTCCCATTCCTCCTGCGACA 163053 29 100.0 32 ............................. CAACAGCCGGGAAAATGAAGGCTGAAGGGCAA 162992 29 100.0 32 ............................. AATCTAATTATGACGGCAAGGCGACTACTAAA 162931 29 100.0 32 ............................. AATAATCACATCACCATCACGCGCGACAACAT 162870 29 100.0 32 ............................. CGGTCTCCAGATAATAGCCGATTTATTTAAAA 162809 29 100.0 32 ............................. GCCCGCATTAAGCCGCTGACGCACTGGATCAA 162748 29 100.0 32 ............................. CGCTCGCAATCGAGGTTTGCGCCGAGTTGCGT 162687 29 100.0 32 ............................. GGCAATCATTAACAGCGCCGTTAATTCAGCGA 162626 29 100.0 32 ............................. GGAGACGAGAAAATCTTTAATAGTCTCAGCGT 162565 29 100.0 32 ............................. CCCGCAATCTGCGGGCGTTCTCGTCAATTTAC 162504 29 100.0 32 ............................. GATTGGCCCTTAGATAACGGGAGATCAAGCGC 162443 29 100.0 32 ............................. CATAACCTTCGCTACCACACTTGCCGGTACTT 162382 29 100.0 32 ............................. CCTTGAGGTTAGGGGAGTCAGGAAATTGCATT 162321 29 100.0 32 ............................. ACAAAATCGGCGGCCCAATCGCCGGCGCTGAC 162260 29 100.0 32 ............................. GCCTGCCGTCTTTTTATTGAGGTCTGTAAACC 162199 29 96.6 32 ............................T TAATCATTTTGTTTAAATCCCGGATCACCTCC 162138 29 100.0 32 ............................. GAGTTATTGTCACTCGTCAGTGATAATTTTCT 162077 29 100.0 32 ............................. CCCGTTGAAGATCTGGACGCATGGGGCAAAGC 162016 29 100.0 32 ............................. GTGAGCTCGGTTTTAATTTCGTCGCTAAGGTG 161955 29 100.0 32 ............................. CAAAAGGCCGACAGTGTGTACACCTCTAAAAA 161894 29 96.6 0 ............T................ | A [161867] ========== ====== ====== ====== ============================= ================================ ================== 36 29 99.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGTACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGCCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCGCAAAGATCCGCGAGATGATATGGCAACAGGTTTCCGTTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAGGTTTTGAGTTTCAGACTTTTGGTGAAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAATTTAGAGATCTTTAAAAATTAGGAAAAGTTGGTGGTTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGATTTAGA # Right flank : TTTCACCAGCTTATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGTGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 182223-180792 **** Predicted by CRISPRDetect 2.4 *** >NZ_QYVK01000004.1 Salmonella enterica subsp. enterica serovar Montevideo strain 10TTU271b NODE_4_length_187613_cov_16.1815, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 182222 29 100.0 32 ............................. CCAAATGGCTAAGTGGGGCGTTGGTGGGCGAA 182161 29 100.0 32 ............................. GCCGCTCCGATACGCATTGCGGCGGGGATAAA 182100 29 100.0 32 ............................. GCAAAATAGTCACCTTGCAGGCTGATGTCAGT 182039 29 100.0 32 ............................. TTGAAGACCGCGCTGATGCAATCCGCCAGGCG 181978 29 100.0 32 ............................. TCGGCATTGATCTTGTTCAGTTCAGCCGGTGA 181917 29 100.0 32 ............................. TGACCACAGGTTTTTCGTCTGCTGATGTCGGC 181856 29 100.0 32 ............................. GACAAGCTGGAACGTGATCGGCTTACTGATGA 181795 29 100.0 32 ............................. CGCCGTAAATTGTGGTACGTCGTGACTACAGA 181734 29 100.0 32 ............................. GCGACCTGCTCGACAGCATTCAGTTTGTTGTT 181673 29 100.0 32 ............................. GCAGCCGTGCGCAAGCGTGGCCTGACGATGAG 181612 29 100.0 32 ............................. TGCTGTTTGCAGACCACACAGGCGACAAATTC 181551 29 100.0 32 ............................. AGGGTGAACGAAGTCACTCTTAAATTTCTGAA 181490 29 100.0 32 ............................. TATGAATTTAATGTTTATCCTGGGCGCTATGA 181429 29 100.0 32 ............................. GTTAGGGAAGGTACTCCTGGCTAATTCTTTTG 181368 29 96.6 32 ............................A TTAGTATCAGTATAAATAACCACGTATTCACC 181307 29 100.0 32 ............................. TATGAGCCGATCTGGAACGTGAGCGCTGAAAC 181246 29 96.6 32 ....A........................ AGTTCGGCAGGTTTTAGTTCCGTCGCGTTTGC 181185 29 100.0 32 ............................. AAAATATAAAGTATGTTTTGTTTAATTCTAAA 181124 29 100.0 32 ............................. GCAAAACTCCCCAGATACCGCGCATCGGCACT 181063 29 100.0 32 ............................. ATAAATTATCGGGAAATCATAATCAGCGCCGC 181002 29 100.0 32 ............................. TCGAGTTCTGGCACGTCAGACTGACGTATCGC 180941 29 100.0 32 ............................. AAAACCCTCAAATATGCGTAACGGGAGGCTGG 180880 29 100.0 32 ............................. GGGATCGCGCTGGCGGTCGCATCCGTTGCCGT 180819 28 89.7 0 ............T...........G-... | ========== ====== ====== ====== ============================= ================================ ================== 24 29 99.3 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GCACGAAGTGCGCTGTACGCCTAACACCTGGGTAACGGTTTCACCAAAAGTGAATATGCGCGGGGGATATGACGTGCTTTCCCAGGCGCTGGAGCGCGCCAATGAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGCTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCGCGTAACTGGCGTTTGTCGATGCAAACACATAAATATTTAAATATTGCCTGATGCATTACTAATTTTACGGACGGCCTGCCGATGCCGTCTGTGAGTCATCCATTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATGATATACGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTCGGCGATGGGGAGCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCATGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGCAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //