Array 1 162410-163437 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_NGJT01000002.1 Vagococcus bubulae strain SS1994 2, whole genome shotgun sequence		Array_Orientation: Forward

  Position	Repeat	   %id	Spacer	Repeat_Sequence                     	Spacer_Sequence                	Insertion/Deletion
==========	======	======	======	====================================	===============================	==================
    162410	    36	 100.0	    30	....................................	TAAAAGAAAAAACCATCCCATCGCTTACGA 	
    162476	    36	 100.0	    30	....................................	AGTAGTAATAACAATGTACCCCTGAACCGT 	
    162542	    36	 100.0	    30	....................................	TTAATTTTTTATTTTTCTGTTTATTTTTGA 	
    162608	    36	 100.0	    30	....................................	ACCTCCATTCGTTTGTAAATCCGTTATTGA 	
    162674	    36	 100.0	    30	....................................	TCTATATGAAAGAAGCAGCTTCGAACAATA 	
    162740	    36	 100.0	    30	....................................	ATTTTTCTGTAACTACTTGCTAGTCCATGA 	
    162806	    36	 100.0	    30	....................................	ATTATGTTGATAAGAATTATAAAGAACTTA 	
    162872	    36	 100.0	    30	....................................	ACAACGTAGGTGCTTACGTTATGAAATACA 	
    162938	    36	 100.0	    30	....................................	ACACGTTTAAAAACAACGCTTGGACTAATA 	
    163004	    36	 100.0	    30	....................................	TATTATTTCGGGTGGTAATTGGGTGTTGGA 	
    163070	    36	 100.0	    30	....................................	CTAACCATCCATTTATCGCATTCATAGTAT 	
    163136	    36	 100.0	    30	....................................	TTTGATGATATGAGTTGGGAACAAGTGATT 	
    163202	    36	 100.0	    30	....................................	CTCACCGGATTTCATTATTAAAAATCATGA 	
    163268	    36	 100.0	    30	....................................	GTTCAGACGCGTTGCATTTTATATTGAGTT 	
    163334	    36	 100.0	    31	....................................	AATGAGGTAGGCACGCAAACTGTTCGAAATA	
    163401	    36	  86.1	     0	..........................AAA.T....T	|                              	T [163434]
==========	======	======	======	====================================	===============================	==================
        16	    36	  99.1	    30	GTTTTAGAGCTATGTTGTTTTGAATGCTTCCAAAAC	                               	       

# Left flank :   TAATATAGATGTTGAAGCTAAGACAAAAGTAGAATATCATATTAATCAAATAACTAATCTTATAAGTCAGGAAGTTTTAGAACATGATCTGAGTCTCACTATGGATGAGATTACTATCCAAGAACTATTTAAATCTTTAGGAATAAAAGTACAAGTAAATCATGAGTCTATATTTTTTAAAATGATGGAGATTATTGAAGTATATAAATATTTAACTAAGAAAAAATGTCTAATATTTGTTAACGTTAGCTCATACTTATCTACTGAAGAACTACTTTCTATAAATGAATATATTCATTTATCTCAAGTTGATGTTTTGTTTTTAGAACGACATGAAATGATAGGAATTACAAATTATATTTTAGATGATGATTTCTATTTTTATAAAGAGAATGTGGTATAATTATACAAAATATAGTTCTTTGAAAAATAAAAAGCATTCAGAGCAGATACTTTGCTATGAGTATGTATAGCGCGATTACGAAATCTTTTGTTACGAG
# Right flank :  TTATTTATAAAAAACTATGTCAATGTTATTTTATTGACATAGTTTTTTTGTTTTACTTATTCAAAGATTTATTGATTCCCATAAAAATTGCTTGTACTAGTCCCATGATACAAAATAGTGTTGCGACGATAAACGCAATATTGTAACCATGTAAGGTAGCAGATAATACATCTGATTTGTAAGTAATAGGAGAACTTAAAAGAAGTGATTTATGTGGCATATCTTTTAACGTTGCTTGAGATAAGAAACTAATTAAGATGGCTGTCCCAATAGAGCTGAATAGTTGTTTTGCTGTGTTATTTGTAGCAGATCCATGACTAATGAGAGTATCAGGCAATGAATTCATACCAGCAGTTGTGATGGGCATCATGACCATACTGACACCTAGCATTCTGACACCATAAATAATGGTGATGAAATGCATAGGTGTTTTTTCATTTAGTGTACATAAACAGGCTGTTCCAATCGTTAATAAACTCATCCCAATTATTGATAAATAT

# Questionable array : NO	 Score: 6.21
# 	Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GTTTTAGAGCTATGTTGTTTTGAATGCTTCCAAAAC
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     NA [Repeat is AT rich:66.67%AT]
# 	Reference repeat match prediction:         F [matched GTTTTAGAGCTATGTTGTTTTGAATGCTTCCAAAAC with 100% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  F [-2.20,-0.80] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      F [0-6] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: R [61.7-85.0]%AT Score: 0.27/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         F [5.28,0.27   Confidence: HIGH] 

# Array family : II-A [Matched known repeat from this family],   
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