Array 1 1636092-1635313 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP021386.1 Bifidobacterium breve strain NRBB04 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ==================================== ================== 1636091 33 100.0 34 ................................. AAAAAAGAAAACCTCTATTGGGGTTCGACCGTGC 1636024 33 100.0 34 ................................. AAAAAAGAAAACCTCTATTGGGGTTCGACCGTGC 1635957 33 100.0 33 ................................. ATGATCGTCCACACCCAGGTGCCGATGCGCCCG 1635891 33 100.0 33 ................................. TCACGGGCGATGAACTGCTTGTCGGTGCCGTCC 1635825 33 100.0 35 ................................. TTGGACAACGGGTACCGGTTGCCGTCCATACGGCG 1635757 33 100.0 36 ................................. ACCTCAGTAGACGTAGCCGTTGCGGCGGGCGCGCGC 1635688 33 100.0 36 ................................. CCTGCTGATGGTGTCGAGGATGAGGTCCGCGAGGTC 1635619 33 100.0 36 ................................. GTAAATCTCAGGTTGCGCGAAAACACATGTTTCGAC 1635550 33 100.0 35 ................................. TGGCTCGCCCACAACTGGTACTAAGGAGAGGGACA 1635482 33 97.0 35 ............T.................... CTGTACGGCAAGGCTCAGACCGGCAGCGAGGGCTG 1635414 33 100.0 36 ................................. CAAGCCCCCATACCCCGCGCAGCCCTCAAATCCAGC 1635345 33 84.8 0 .............T...........G..CCT.. | ========== ====== ====== ====== ================================= ==================================== ================== 12 33 98.5 35 GTCGCTCCCCATCCGGGGAGCGTGGATTGAAAT # Left flank : GAGCAAGGCAGGAGCGTGAGGTTCCGGCAGACCGCGGAGCTCGTGCTCCAGCCCGGCAAGGCCAAACGCGACGGCGCCCTCGACAGCCTGCTCGGGGACCTCGCCCGTGCCGACCTGATCATCCTCGACGAGTTCGGCTACGTGCCCTTCGACATCGACGGGGCCCGTCTCCTCTACCAGATCATCGCCGGCAGCTACGAACGTCGCAGCATCATCTTCACCACGAACATCGAGTTCAGCAAATGGGGGACGATCTTCGCCGACGACAAACTCGCCGCCGCGATCATCGACCGCATCGTCCACCACGGACGCCTCATCGAATTCACCGGCCCCAGCCGACGCGTCAGCCAAGCCCTCATGTTCGGCAAGACGGACAACCAGTAAAACAAACCACCGGCCGGCACTCCTCATGCCGAAAACCGAAAAAATTAGTGACGAAACACGAAACACCGACTTGACTAAAAACAAGCATCGCCGCGACCGCCGCCGAAGTGGCGCAA # Right flank : GCCGGATTAATACGTTGGTTGATGTCGGTATCGTCCCATCTATCCTTGATATAAGGATTTGTGATGGGGGTAACGATATCAGCTTGGTTCCACTGGTCAACGTATGAGTATCGGATACGGTTCGGTGCGTATGTTTCGATCATTCGCTGATAGTAATCGCGTTCATTAAGAAGCAGGTCCACCAGATATCCGGGTTCGTTTGGGAAATTCTTTAGTGCGCGAGTATAAAGATTGTGGTGTTCGTCCAATACCAGAGCTGGAACGGAATCTAAGCGCAAGAGTTCTTTAAACATGACGAGTCGCCCAATTCGACCGTTACCGTCGGAGAATGGGTGCGTGGATTCGAACATCCAATGTGCTTTTGCGATTGTAAAAGGATCATCTTCCAATTGTGAGTACAAGCTGAATACCTGTTTCATGGCAAGAGGCACATCTGCGGGGAGTACCGTATGAATTCCCTCAAGTTGGCTGATGACGTTGGGCACTATTTTGTATCCGCC # Questionable array : NO Score: 9.19 # Score Detail : 1:0, 2:3, 3:3, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCCCCATCCGGGGAGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [7,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCTCCCCATCCGGGGAGCGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-8.40,-8.50] Score: 0/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [58.3-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,9.41 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 1645718-1643724 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP021386.1 Bifidobacterium breve strain NRBB04 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ==================================== ================== 1645717 33 100.0 34 ................................. CGCTCGAATGCGGTTGAGTATCGTATTGGAGACA 1645650 33 100.0 35 ................................. GGTTCGGAGCGTGGCATAAGCCACGCGCGTGTGAG 1645582 33 100.0 35 ................................. TGTTCGCCCGAAGTCAAGTCGGCGCTTGACGTGCA 1645514 33 100.0 36 ................................. ACGTGAAACACAGGAACAATGGTTTGGAAAATTGGA 1645445 33 100.0 35 ................................. GCATCATCCTGGAATGATGGGCGCCGGCGATAATC 1645377 33 100.0 35 ................................. AGGATCGACCAGTGGGGAGATAACGCTTCGACTCA 1645309 33 100.0 30 ................................. CGGTTACCGCAACCGCCCTGTATACGAATC 1645246 33 100.0 35 ................................. AGCGCCAAAGTGGCCACGTCCAAATTCGGCACAGC 1645178 33 100.0 35 ................................. AGCGCCAAAGTGGCCACGTCCAAATTCGGCACAGC 1645110 33 100.0 35 ................................. GATGTATGGGGTATTGCAATCTGCCCGCGCTCAAA 1645042 33 100.0 36 ................................. ACGTGAAACAAACCGCAACCGGAGAGCGTCGGCAAA 1644973 33 100.0 34 ................................. GCAACTACTCGGTTATCTGCATCCCACGGCATTA 1644906 33 100.0 35 ................................. ATTGACTTGGATTCCATGACCGACATGGAGGTCGC 1644838 33 100.0 35 ................................. CTGACTGCCGATCTCGAACAGGTCTGTGACGGTCG 1644770 33 100.0 35 ................................. TACGATCCGCATGACACGGCGCATCTCCTGGTCAC 1644702 33 100.0 34 ................................. CGAGAGCGCACGTAAATCGCTCGGTTCGCCGTAA 1644635 33 100.0 35 ................................. CGCCTGATTACGTGACATTGCAATCCAATATGCTG 1644567 33 100.0 35 ................................. CTTTGTATGCAATCGTATCAACGCCCGTCGCGACC 1644499 33 100.0 35 ................................. GCGTAGTCTAGGCCCCACGCGCCGGTCGAGGCGGT 1644431 33 100.0 35 ................................. AAGGGCCTCGGCTACGGCACGTACACGGTCACCGA 1644363 33 100.0 34 ................................. AACAACAAGGCCACGCATGAGGAACACAGCGCCG 1644296 33 100.0 33 ................................. TCCTGCGCATCCTTGGCCTCACGTTTCGCGGCT 1644230 33 100.0 35 ................................. ATCAGGCGTGAACCCCGCCAAACACGTTCGAATAA 1644162 33 100.0 35 ................................. ACCATAGCCCACGAACTCGGACACCTGCTGCTGCA 1644094 33 100.0 34 ................................. CCCGACCTGCGGTTCGGCACGGTCTCCCAGCCGC 1644027 33 100.0 36 ................................. ACGGTGACGGTCACATCGTTCCACCCACCAAATACG 1643958 33 100.0 34 ................................. AGGGACTTGACGTAGAAGTCGCCGAGGGTCTGCG 1643891 33 100.0 35 ................................. CTCGCCCGGCGGAATCCCGTATCGAAGTAAAGCGA 1643823 33 100.0 34 ................................. GAGCTTTCTGATGGCGCTCGGATCCCAAGTCACG 1643756 33 100.0 0 ................................. | ========== ====== ====== ====== ================================= ==================================== ================== 30 33 100.0 35 GTCGCTCCCCATCCGGGGAGCGTGGATTGAAAT # Left flank : AAGCCAAGGCCGAGTATGGCTTGGCCAATGAGGTCATAGAGTCTGAATGGTTTAAGTAGCTTGGACTGCCAGCCTTACGAACTGTTGAGGCAGTCGAAAAAGGAGATGGCACTATTACGTGTAGTTTGTTCCGTTGCAATTGAGGTATGCGTAAAGGATCGAGCATCGTGGTGGGCGGTGACATTTGCCTGTTGATGGGGTGGCAATGCCTGAACTGGCTGCGTCGAGGGGAGGACGGTGATGTCGCCGATATCGTGCCATGTGGCCGGTGCGACCTTAAAGTTCTCATGAATTACTCGTCCTTTCGCACTGCAGAATGACGTGGAGATGAGGGTTATTTTCGTCTCTCTGGTTGCTTGATGACTTCATAGTGGCTAATGCGCTGGTGTTTTTTGACTTTTGCGGACGGTGCCCAAAACGTCAACGACGATCTGCGATACAATCAGTGTTGAAAATGGATGATTTTGCCCATATCGTGGGCGAAGGTGTCCATTTTCGCG # Right flank : CATTGTGAGTGTAATCGGCAGTGTTGGTTTTTGTTTTTGTTCAATAGGATTTTGAGGTTTTAGTCACGAAGGTTTTTCGGGTTTAGGCGGAAAGGCATGCCGACCACCCGTGGGCCTTAGCCTGATGGTGCTTCTAGTTCCATTCGGGAAAGGTCCGGAAAGGCAATGATCAGCATGCCCCAGATACAGTCTATCCGTTCGCGTCGCAGGAACGGTGAGTCCATCGCCTCGATAGCGCGCAGCGAGAGGGTCAGCGAGCCGACCGTGCGCAAGTATCTGAGGGTCGACGGCCTATCGGCCAGGCCGCCCGTGAGGCGACGTCGTGGTTCGGTGATCGACGAGTGGCTGCCCATGATCGAGGGCATGCTCGCCGAGGACCGGGAGACCTGGCGCAAGCAGCGGCATACCGCGACCCGCATCCATGAGCGGTTGCGCGACGGGTACGGGGCCGGGGTGTCGTTGTCGACGGTGACCCGGACCGTGGCGCGGCTCAGGCGCGA # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCCCCATCCGGGGAGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [7,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCTCCCCATCCGGGGAGCGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-8.40,-8.50] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [65.0-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,9 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //