Array 1 46351-45127 **** Predicted by CRISPRDetect 2.4 *** >NZ_QQJK01000006.1 Neisseria meningitidis strain M29645 M29645_CHA4080A32_cleaned_ctg_9990, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 46350 36 94.4 30 ........G...A....................... GCGGAACGGGTTGACAGACTGAATTTGAGT 46284 36 97.2 30 ............A....................... ATCACTTTTAAAGGCGGCATCGGCTGGTTT 46218 36 100.0 30 .................................... AGGGGTCGTGAATGGAGTTCTTGCAGTTCG 46152 36 100.0 30 .................................... TAAGCGTTTCTTTTTTGGTCTGCTTCTGCT 46086 36 100.0 30 .................................... AATCAGACCGACTTTACAACGAAGGTTTGA 46020 36 100.0 30 .................................... TGCTACCAGCGACAACAGGCATTACGCCCA 45954 36 100.0 30 .................................... TGAGAAAGATTTAAGAACTAAGTTCCCATC 45888 36 100.0 30 .................................... TCAGCCTCAAATACATCCGCCAAATCGTTG 45822 36 100.0 30 .................................... ACACAATCTCCGCCGTTCCAATCAAATGTG 45756 36 100.0 30 .................................... CTGATGAAGATACAACCGCACTAACTTTAC 45690 36 100.0 30 .................................... CTCTTCATTGAAGAAGTTATAAGCCTTTGT 45624 36 100.0 30 .................................... TTTGGTAAAGGTTTCTGTTGCGACCCGAAT 45558 36 100.0 30 .................................... GCCTGCGTACTTGGTACGCTGGTCGCCTCC 45492 36 100.0 30 .................................... TTCATAGATCGATGCATGAGGTTTTCATGG 45426 36 100.0 30 .................................... AGGTCAAAGTGTCAGGCAAATTTAAAGGTG 45360 36 100.0 30 .................................... AAATCCATTTATCGCCCACCCTTTCCGGCC 45294 36 100.0 30 .................................... TGCTGAAATTATGGCAAGTATGGGGCAAAG 45228 36 100.0 30 .................................... TAGCAAACAAGGAATATTCAAAGTCCTTTA 45162 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 19 36 99.6 30 GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT # Left flank : GGAAACGGTCGATGTGTTTGGCAATCATGGCTTGGGCGGTTTGTTGAAAGAAGGTGCTCATGAGAAATCCCCTAAATGTCTTGGTGGGAATTTAGGGGATTTTGGGGAATTTTGCAAAGGTCTCATTTTGCAAGATTTTAGTTTAATCATCAAACAGGGAACAGCAAAAATCCCCGCTGCAACGGGGATTTTTGTTCGGCTCTCGCCTGTGTGATTAACTTCACTAGGAGAAGCTAAAATGCTTAAATTCCTTATGCGTGGGAAAAAGTTGCTGCTGTCCGTTGAAGTGAACCACAAGTTCATTTTAGCGGTTGCTTTGCTGTTAAGTCAATGCAGTAGCTAACCCGACCACAATCAAAAAAACGCAAGTTTTCCGCCTACTCTGTGAGTGGGCGGTTTTTTCTTATTTCAAATCTGTGACACAATATCTGTCGCCTTTCTTGCCATAATTGCACTGTGTCTCAATGACTTTAACGCACGTTCGCTTATCGCAACGGCTG # Right flank : ACTTCGACGGGAAATCCTTATTTCATAAGGGTTTCCCGTTTTATTTGTTATGAAAAAATGGGCTTAAAATAACAATAATTGGTCTGAATTGACCTTTTTTTCTTGGGTTTTCAGCTCGCCCAACAGCAGTTTCATGGCGGCATATTGCTTTTCTGTTATCTCCAAACAGCGGATTGAGCCTTCTTGCGGAAGGTTTGCACACAGTCTGTTGTGGTGTTTTTGCAACGAATCGCGGCCTTTGACGATACGGCTGTATACGGAAAGTTGCAGCATTTGGTATCCGTCTTTTAATAAAAACTGGCGGAATTGATTGGCGGCTTTGCGCTTTGCCGCCGTGATAACCGGTAGGTCGAAGAAGACGATAATCCTCATAAATTTGGCCTCACTCATATTGGTATTCTTTCAATGGTAGGATTTCAGGCAGTTTCAGTTGTTTGGCGTTTTTATCGGTTACGCCGGCTTGAAATGACAAAATCATTTTGTCGATGGCAGCCAAGGTG # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: R [matched GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.90,-0.40] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.68,4.5 Confidence: HIGH] # Array family : NA //