Array 1 58177-59347 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_QJOG01000002.1 Lactobacillus helveticus strain FAM22157 FAM22157_scf0002, whole genome shotgun sequence		Array_Orientation: Forward

  Position	Repeat	   %id	Spacer	Repeat_Sequence                 	Spacer_Sequence                     	Insertion/Deletion
==========	======	======	======	================================	====================================	==================
     58177	    32	 100.0	    35	................................	TAAAAGTAATACTGTATCGTTGCCAAATGTTAGTT 	
     58244	    32	 100.0	    34	................................	TTTATGCTGTAACCACTGCGATTACCCCAGAATA  	
     58310	    32	 100.0	    34	................................	GTTATCGAGTTTAGGCCAAAGAGGTGGCTGGCTT  	
     58376	    32	 100.0	    35	................................	TTAAAAGCCTTAACGTAACGATTGGAATTAATGCT 	
     58443	    32	 100.0	    34	................................	TTCTTAAACCAATTAATTGTATCAGAAACACCTT  	
     58509	    32	 100.0	    36	................................	GTCAAGACCACCTTCTAAGAAGTGAAACCACTAGTT	
     58577	    32	 100.0	    36	................................	ACCTGGTCAAGAAGAATTATTAAAAGAAAATCGCGA	
     58645	    32	 100.0	    35	................................	AATTATGTTTGGGATGATAAAAAAGAAGCCCCGAT 	
     58712	    32	 100.0	    36	................................	AGTGTAAGGAATGGTAGTCCAGCCATTATGATATTC	
     58780	    32	 100.0	    34	................................	ATAAGTGGGTAGATGGCTTAGTTAAGGGCTTTAA  	
     58846	    32	 100.0	    36	................................	CAATGGCTCATATTGGGAGCAGGATAATCAGGGATT	
     58914	    32	 100.0	    35	................................	AACCTGATTCAAACGGAAATATTAAAACTGATCAC 	
     58981	    32	 100.0	    35	................................	TTCTAATTTCTTTAGTGGTGATCCTGATGGTGGTA 	
     59048	    32	 100.0	    35	................................	TTACGATTAGAGTAAAGCTCCAGAATCATAAGAAA 	
     59115	    32	 100.0	    34	................................	TAAATATTGACTGAAAAAAACACTATAAATTTTG  	
     59181	    32	 100.0	    36	................................	TACGCTCTTGTTCGTTGATTTTGATTGAGAACTACC	
     59249	    32	 100.0	    35	................................	TACTTAGATGCTGAAATGAACTTAGACCCGTGGAT 	
     59316	    32	 100.0	     0	................................	|                                   	
==========	======	======	======	================================	====================================	==================
        18	    32	 100.0	    35	GTCGCACTCCTTGTGAGTGCGTGGATTGAAAT	                                    	       

# Left flank :   GGAGATCTTGACGAATACCCACCGTTTATGTGGAAGTAGGTATGCAGCATGATGGTAGTAGTTAGTTACGATATTAATACGGAAAGTAAATCTGGTCAGCGAAGGTTACGTCATGTAGCCAAAATATGCTTAGATTATGGACAACGAGTTCAAAATTCCGTTTTTGAATGTAAAGTTAATTCGATGCAATTAGAGTTGATGAAAGAAAGACTACTAGACGAAATCGATGATAGCCAAGATAGTTTGTATTTTTTTAATTTAGGGAAGAATTATAAAAATAGAATTAAGTCATATGGAATTAAAGAGGTTATAAATTTAGAATCGCCTGTAATATTTTGATATCGGTGCGAACTGTATGTGAACATGCTTTTAGGGAAGATTCGCACCAATTTTAAACAGGTGAAAAGTGATCTTTTGATAAAAAATATATTTTTATCAGGGTAAGTTAATTTGAAGCCCAATATTTAGAAATGAATTGAAATCATGATCTAAATATTGCG
# Right flank :  TTTTAGGTCCATTGCGCTCTTGCCAGTGAAGTCGTGTCGCACTCCTTGTGATGCACTTGTGGGTGTATTAGTCGGCTTCTTCAACCCAGGCTTGAAGTACTAATTATTAAGAGGAGATTATTCAGATGACAATCGAAGAGATGCAAAAAGGCTATCAAAATGAAGTTGCTTATCAAAAACATATGCTTCGCAATCTAGGCTATTGATTCCAACTCTTTTTAACAGTTAGTGCGATTGGTTTGGTTTTAATTTACTATTTCCATCAATCAACTATGTGGCTCTTTATAATCGGAATTATTCTGATGGTCGCCTGTGTTTTAGGAATGTTTGCTTTTGGCTATGCTTCTTGGCGCGGACGGCAGAATGTCACTCTGGTAATCGAAGACTATGAGAAAAAGATTGCAGAAATTAAAAAGTTAGATCAAAATGCTTCCGGAACGGAAAAGATCCGTTTCAAATGATTCTTATATGAATAAAACAATTTCCCCTTCTCTAGAAAT

# Questionable array : NO	 Score: 9.26
# 	Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GTCGCACTCCTTGTGAGTGCGTGGATTGAAAT
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         F Score: 4.5/4.5
# 	A,T distribution in repeat prediction:     R [6,10] Score: 0.37/0.37
# 	Reference repeat match prediction:         F [matched GTCGCACTCTTAGTGAGTGCGTGGATTGAAAT with 94% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  F [-3.50,-2.50] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      NA [0-0] Score: 0/0.41
# 	AT richness analysis in flanks prediction: F [73.3-48.3]%AT Score: 0.27/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         F [9.64,0.37   Confidence: HIGH] 

# Array family : I-C [Matched known repeat from this family],   
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