Array 1 58847-55952 **** Predicted by CRISPRDetect 2.4 *** >NZ_JPRF03000002.1 Kitasatospora aureofaciens strain ATCC 10762 contig_10, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================== ================== 58846 29 100.0 32 ............................. ACCTGGCGGCCGTTGGCGCGGGCCTCGTCGTA 58785 29 100.0 32 ............................. GAACGGGCGCGGGCGATCTGACGCTCGGTCGG 58724 29 100.0 32 ............................. TCACGGTCAGGGAAGGACGGAGGGACGGAAGA 58663 29 100.0 32 ............................. GTCGGGTTGAAGGCGAGGACCAGGCCGTCGGC 58602 29 96.6 34 ............................A GACCACCCGGAAGGCGCCTCATGAAACCACTCAC 58539 29 100.0 32 ............................. AGGACGCCCGCGAGGAAGAGGCCAAGGCCCGC 58478 29 100.0 32 ............................. CAGCTGCAGGCCCAGATGGCTGCTGCGGCGCG 58417 29 100.0 32 ............................. GGCGAGGGCTTGCCGTCACCGACGTCGTCGCG 58356 29 100.0 32 ............................. TGGCAGGAACGTGCGTCGTTCGCACTCGGAAT 58295 29 100.0 32 ............................. GACGGCGTCCCGAAGTGGGAGGTGCAGGTCGT 58234 29 100.0 32 ............................. ACCGCCACCGACCTCGCCATCGAGGCGGAAAA 58173 29 100.0 32 ............................. TTGGCCCACCCGCTCGCGAAGTTCACGTTCTG 58112 29 100.0 32 ............................. CCCCTGCGTCTCAAGATCCACGACCGGCCCTG 58051 29 100.0 32 ............................. GCGCGCGCACGGCGCGCGCGCGTGAGGGCTGC 57990 29 100.0 32 ............................. AAGCGCATCAGGGACATCATCGGCACCGACCG 57929 29 100.0 32 ............................. GCGGCCCGGGCCGCCGCGCGCGTGCCGGTGGC 57868 29 100.0 32 ............................. TCCCTAGTCCCCCGTCGACACGAGGAGGGCGC 57807 29 100.0 32 ............................. GCCCACGCCGAGAAGAACGCCGACCAGCTCGA 57746 29 100.0 32 ............................. CAGAGCCCGGGTCCACTCCGCCGGATCCTTCG 57685 29 100.0 32 ............................. GTGATAACACCACTAGTGCTGGGCATAAAGAG 57624 29 100.0 32 ............................. TCTCGAACTTCACGAACTGGGTGGACAAGAAG 57563 29 100.0 32 ............................. CCCGGTACAGCGCAGCAGATTGCCGGCGGCGC 57502 29 100.0 32 ............................. CGGCTTTACGCCACCTTCCCGCTCTCCAAATC 57441 29 100.0 32 ............................. TCGGCTTTGGCGGGCGACTCCACCGACGCCCG 57380 29 100.0 32 ............................. GTAGGCCATAAATGACTCATGCGCTACCCCCT 57319 29 100.0 32 ............................. GCGACGGCAGCGCCCTGACCGAGCAGGAACTT 57258 29 100.0 32 ............................. AACGCGTTCGCCGGTGACTCCTCGGATGCCCG 57197 29 100.0 32 ............................. TCGGCGGAGGCGGTGCCCATGAGGACGGTGCC 57136 29 100.0 32 ............................. TGGGCCACCAGCGTCCAGACCCGAGACCGCGC 57075 29 100.0 32 ............................. CGATCTTGCGGAGGTGACATATGGCCATGTCG 57014 29 100.0 32 ............................. TCGCAATCCGGTGCACCATGCACCCACTTTTC 56953 29 100.0 31 ............................. CCCGGCGCCTTGGGGGACGGGTCGCGAGGAT 56893 29 100.0 32 ............................. GTGGAGTAGACGACGCCCTCGTCTTCCCAGCG 56832 29 100.0 32 ............................. CCCCCCGGACTGATCCCCAGGAGTTCCCGCTC 56771 29 100.0 32 ............................. GCTGGGACACCTGCCCGCGCCTGCACGTGTTC 56710 29 100.0 32 ............................. GCCGCGTGGGCGGCCTCCGGGTCCGAGGGGGC 56649 29 96.6 32 ................T............ GATCAGCATGGACCGCGAGTTGAACATCATCT 56588 29 100.0 32 ............................. CTGATGACGTCGAGCAGGAGTTCGCGAATGGG 56527 29 100.0 32 ............................. CCGGAGAGCCTGGCCCGGGAGATGCGCAAGCA 56466 29 100.0 32 ............................. CCAGATATCCGAATCCGAGGCACGTCCCGGTG 56405 29 100.0 32 ............................. CCGAGCAGGAGGCCGGTGTCGCCGGAGGCCGG 56344 29 100.0 32 ............................. GCCTGACGTGCTGCGGCCCCGCCCTTAAAGAA 56283 29 100.0 32 ............................. TTCGACGAGTACACCCCCGACGCCTGGCACGA 56222 29 100.0 32 ............................. CCTTCCCCGCTCAGCAGCATCTGCACCACGCG 56161 29 100.0 32 ............................. ATCATCGGGTCGCTGGTCGACGCCATCAAGTC 56100 29 100.0 32 ............................. GCCAGGGTCAATAGTTCGTTGACCGCCGCCAG 56039 29 96.6 32 .................T........... CTCCGAGTCCGCGCAGAAAACGCGCGGAGGGA 55978 27 82.8 0 ................--....C.T...T | ========== ====== ====== ====== ============================= ================================== ================== 48 29 99.4 32 GTCCTCCCCGCGCGAGCGGGGGTCAGCCG # Left flank : GGGTCAGCCGTCAACGCCCACGGCGTGCGAGGCGGGGGAGTCGTCCTCCCCGCGCGAGCGGGGGTCAGCCGATCCTCGGCGGCGGCCGCACCGAGTACCTCGTGTCCTCCCCGCGCGAGCGGGGGTCAGCCGTACTCTGGCGGTGTCTAGGCGCTAGGTGCTTGGTCCTCCCCGCGCGAGCGGGGGTCAGCCGTCCACGCCTACGGCATGTGAGGCGGGGGAGTCGTCCTCCCCGCGCGAGCGGGGGTCAGCCGACGAGACCGTCGCCGCCGCGATGATCGACCGACTCGTCCACCACGCCGAGGTCCACTCCCTCAAGGGCGAGTCCTACCGCATGCGAGGACGCGAACTCGGACGCGTCCCCACCGACGACAACGACTGACGCACACCATCCAACGAGACCAACGGATGGCCCACAACTGAACCGCTGGAACCGGCCCGTTTTGAGCCGTTGCCGACAGTCAGCCAGCTGCGCCGCCCCAGGCGCACCGGCTGGCGCC # Right flank : GCTCCACAAGGCCAGGATGCGGGTGCGCGACGACCTGACCACGATGCTCTGCAAGCGGGTGGCCAGCAAGGTGCGCCGGGCCCGCGACGAGCTGGAGGAGATCCGCCGCCAACAGCAGGGAATCGTCGAGGTGCTGGTCGGCAACTACCGCACCCTGCTGCGGCAGGTGGACACCGACGGGCCCGCGCAGACGGCGAGGGCGAAGGCTGGCGCGCTGACGAAGGAGACCCTGGACGCCCTGGAGGGGCTGGACGAGGAAGCGCTGCCCGGCGAGGTGTCGCGCCGGCTGAACCGGAAGGTGTCGGCGGCGTTCCTGAAGCTCTCCGAGGGCCTGATGATGCAGTCCAACGGCGCCGGTCGAGCAGGGCGCCGACTTCCGCCAGCCGCCCGGCGGGACCGTTGCCGTCCCCGTCCCGGCCCGCCGCCGCCTCTCGCCCGGTGGCCTGACCTTCTCCGACCCGGACCGCCAGATCTGACCGGTGCGGCCCGGCCCGCCGGAT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCTCCCCGCGCGAGCGGGGGTCAGCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [3,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCCTCCCCGCGCGAGCGGGGGTCTACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.20,-13.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [33.3-26.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 59732-59093 **** Predicted by CRISPRDetect 2.4 *** >NZ_JPRF03000002.1 Kitasatospora aureofaciens strain ATCC 10762 contig_10, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 59731 29 100.0 32 ............................. TGCGCCCCCTCCGTTACCGCAGTCGCGAGCTG 59670 29 100.0 32 ............................. TTGCTCAACGTCTACGCCGCCCACGGCTGGAC 59609 29 100.0 32 ............................. ACGGGGCGTACGTCGCGGACGTGATCGACCTC 59548 29 100.0 32 ............................. GTTCCGGCCGCGTTCGCCAGGTCTTCCCGGGT 59487 29 100.0 32 ............................. GGCGTCCTCAACGTCTCCGGCATCACCAGCGT 59426 29 100.0 32 ............................. CCGAGACCGGCCGCGGCGGGCAGGCCGTGCTG 59365 29 100.0 32 ............................. TCAACGCCCACGGCGTGCGAGGCGGGGGAGTC 59304 29 100.0 32 ............................. ATCCTCGGCGGCGGCCGCACCGAGTACCTCGT 59243 29 100.0 32 ............................. TACTCTGGCGGTGTCTAGGCGCTAGGTGCTTG 59182 29 100.0 32 ............................. TCCACGCCTACGGCATGTGAGGCGGGGGAGTC 59121 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 11 29 100.0 32 GTCCTCCCCGCGCGAGCGGGGGTCAGCCG # Left flank : CCAGCGCTTGCTCGCACCAGAACAGCAGATGGCCACGCCTGACCCCGAGGAACAGCTCGTGGACCTCTGGGATCCCGTCTCAGGAGTGCTGCCGGGCGGCGTGAACTACTCGACGGAGCAGACCCTTTGACCGCCTCCCTGCAGTCCGCTGGACAGTCATGGCAACAATGACCGTCCTGTCCGCAACCGCTGTCCCTGATCACGTTCGAGGAGCCCTGACCCGCTGGCTCCTCGAGGTCACCCCTCAGCTGTACGTCGGCACCATCTCCGCGAAGGTCCGCGACGAACTCTGGCACGCCGTTAGTGAATGCATCGGTAGCGGAGTGGCTGTACTGGTCCACCCGGCATCCAACGAGCAAGGCTTCGTGCTTCGCACAGCGGGTGAGCAGCGACGAAAGCCCGTCGACTTCGACGGGCTCACACTGGTGGCGATGACCCGCCGGCATCACCACCAAGGTCAAGAAATCGCAAACCCCTAGAAACATTGCAGGTCGGAAAGG # Right flank : ACGAGACCGTCGCCGCCGCGATGATCGACCGACTCGTCCACCACGCCGAGGTCCACTCCCTCAAGGGCGAGTCCTACCGCATGCGAGGACGCGAACTCGGACGCGTCCCCACCGACGACAACGACTGACGCACACCATCCAACGAGACCAACGGATGGCCCACAACTGAACCGCTGGAACCGGCCCGTTTTGAGCCGTTGCCGACAGTCAGCCAGCTGCGCCGCCCCAGGCGCACCGGCTGGCGCCGTCCTCCCCGCGCGAGCGGGGGTCAGCCGACCTGGCGGCCGTTGGCGCGGGCCTCGTCGTAGTCCTCCCCGCGCGAGCGGGGGTCAGCCGGAACGGGCGCGGGCGATCTGACGCTCGGTCGGGTCCTCCCCGCGCGAGCGGGGGTCAGCCGTCACGGTCAGGGAAGGACGGAGGGACGGAAGAGTCCTCCCCGCGCGAGCGGGGGTCAGCCGGTCGGGTTGAAGGCGAGGACCAGGCCGTCGGCGTCCTCCCCG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCTCCCCGCGCGAGCGGGGGTCAGCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [3,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCCTCCCCGCGCGAGCGGGGGTCTACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.20,-13.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [30.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.14 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 69617-72061 **** Predicted by CRISPRDetect 2.4 *** >NZ_JPRF03000002.1 Kitasatospora aureofaciens strain ATCC 10762 contig_10, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 69617 29 89.7 32 ......G......AC.............. CACGATGGTCTGCCGGGTGCGTATCCGGTGAT 69678 29 93.1 32 .............AG.............. GGACAGCCATGTCCGACGCCACCCGCGTCCTC 69739 28 89.7 32 .....-.......AG.............. TTCTGGAAGCAGGGCCCCACGGTCGCCAACCC 69799 29 93.1 32 .............AG.............. CACTCGATCTGGATCGGGCGCGCCGGGGAGGG 69860 29 93.1 32 .............AG.............. ATGTCGCCCATCTACAGCCTGACCACGGGTAC 69921 29 100.0 32 ............................. CACTAACTCGCTACCGGCATCTACCGCCGCCG 69982 28 96.6 32 ......................-...... CAGGAGAACCAGTGAGCAACCCCGTCGAGCAG 70042 29 100.0 32 ............................. GTGAGACCGGACAGCGCGTCCGGCACCTCGGA 70103 29 100.0 32 ............................. TACCCGGGTCATGCTGAATCTGGCCGACCCGG 70164 29 100.0 32 ............................. ATGTCCATGGTTCCCCCCTACGGTGCGATCTT 70225 29 100.0 32 ............................. GCGCACAGACGGACCGCACCTGGACCTGCCAG 70286 29 100.0 32 ............................. AACACGCTGGGCGGCGGGTGTGCCGTAGTAGG 70347 29 100.0 32 ............................. AACACGCTGGGCGGCGGGTGTGCCGTAGTAGG 70408 29 100.0 32 ............................. GCGTCCAGACCGGCGGTCAGGTCCATGTCGAG 70469 29 100.0 32 ............................. CCGAGCGGCTGCGCGAGCAGGCCGAGAACGAC 70530 29 93.1 32 .G.....................T..... CCAGCCGCCAGGGGCGGTCAGGGTGCGGACCC 70591 29 89.7 32 ..T..T..T.................... GGCCAGGACACCGGCACCGGCGGCATCATCAG 70652 29 100.0 32 ............................. CCTGGCAGCCTGCGGGCCAACTCGGACATCCT 70713 29 96.6 32 ..................A.......... GTCCGCGTCCCACGCGGCGTCGACCCGACGAC 70774 29 96.6 32 ..........T.................. TCGTCGCACTCGACCGGGTCAGGGCGCTTCGG 70835 29 100.0 32 ............................. GCCACCCAGTTCGGGTTGTAGTCCTCCCACTT 70896 29 100.0 32 ............................. GCGACGACGGTCACGGTCAGCACCGCGCTCAG 70957 28 96.6 32 .................-........... TCCGTGGCGGCCGCCCCGCCGGCCGCCGGGCC 71017 29 100.0 32 ............................. GTGATGTACTCCCGCATCGACTCCGGGTCGCA 71078 29 96.6 32 ...................A......... ATCGTGTTCACGGTGATCGACTTCCCGGAGCG 71139 29 93.1 32 .............GG.............. ACGGGGGCGGCGCTGCACGCGGCGTCGGTGAT 71200 29 89.7 14 ......T......AG.............. ATCTGGTCCCTTTC Deletion [71243] 71243 29 93.1 32 ...........C..C.............. GCCGCCAGCACGGTGCTCGCCGAGGTGCTGGA A [71254] 71305 28 86.2 32 .C.........A..C..-........... TCGGGGCTCCGCTGCAGCGTCCGACACGGCCA 71365 29 86.2 31 ...T.......A..C.T............ GAGACCGTCGCGGGCACGTACGTCGCGCCCA 71425 29 93.1 32 ..T........................T. GCCCCGACGACGCAGAATCGGGAAACCACAAA 71486 29 100.0 32 ............................. GTGTCCATTGCGGTGTCGTCCACCGCCACGAA 71547 29 86.2 32 ..A..........AG.......C...... TTCAGTGCCAGTTGTTCGCCAGCACTGCGGCC 71608 29 89.7 32 ..........T..AG.............. GTCCGCCAGCTGCGGCAGCTCCGCCGGATCGG 71669 29 93.1 31 .............GG.............. ACGGGGCGGCGCTGCACGCGGCGTCGGTGAT 71729 29 93.1 32 ......T.......C.............. AACACCCACACGCCGGGCTGCTCGGGGTCGGT 71790 29 89.7 32 .............AG.............C AGCGAGGGTTCCTTACCAGGGAAACCGGAACT 71851 29 89.7 31 ........T....AG.............. CTTGTATTCGGGCATCCGAACCTCTCGTTTG 71911 29 89.7 33 ........T....AG.............. GCGAGCGCGGGGGCGCTGGCGATCCAGATCCGG 71973 28 86.2 32 ...........A..C..-........G.. CCCTTCCGGCTCCGGTGAGGTGCGAACTCACC 72033 29 93.1 0 ...........A..C.............. | ========== ====== ====== ====== ============================= ================================= ================== 41 29 94.5 32 GTCCTCCCCGCGCCTGCGGGGGTCAGCCG # Left flank : GGGATACGGACCGGGCAAGCCCGCGCTCTTGCCCCACAGACGCCGATCTGGACGCTCAGGTCCGGAGACACCGACGAGGTAGCTGTCAGTCATGGCCGAACACCTATCAGCCACCACTGACACCGATGCTGACACTCAGGTCCCGGAGGTCGTGGCTCAGCCACGGACTGACGCCCTGCTGCGCTGTCTTCGGGTAGTTCTGTCCGGCTGCCGGGAGCTGCAGGAACCGCGGGAGACAGCGTGGTCCTCCCCGCGAGCACAGGGTCAGCCTCACGGGACAAGACACCTCCCCAGTCAGGCGGGCTCACGCACACGTTCGACCGCGCCGACAAGTTGCGCACGTACTCCCGCCCAAACCGAGCACACACCCAACGTGGAGCCTGCGCCATGACACGATGAAGTTCGCTCCTTGACACCACAACAGCGCATCCACCATCACATCCCGCCCTACAACACAGTCAATAAACAGCAAAGGCCCTGCTACGCCGCAGGTCAGAAAG # Right flank : GGGGCCCGGGCGCCATTCTGACGGGCATTCCCGTCTTCCCCTCACTCGCCCGTCGCCGCCCTGCTCGTCCTCGCGTCGCAGCCCCTTCCGACAAGGGGCGCGATCGCACTCGCGCGCGCGACCAGCTCACTAGGACGACCTGCACGCCGGTCGACCGGTTGCGGCCCGGCGCGCGCCAGACGGATGGGAACGGCTTCCCCAGGTCACCCAGCACCTTCACCAGCAGGGCTGGCATCCAGTCACGCCGTGCAGGGAGTCCAGCTCGCTCAGCCGGAGCGTTGGAGAGGATGGCGTTAAGCGGAGCCAGCGGGCCGGTCAGCGGTAACGGAAGAGCTGGTGCAGGCGCAGGACCTCGGACTGCCAGTGCGCGCGGGCCTCGCGGGTGTCGGCAGGAATCGTCCGGCCCAGGCGACGGGCCAGGCCCTGGTAGAGGGCGGGCGGGCTGCTGCCGTCCGCGGCAAGCAGCGAGGACAGCAGCGGTTCCTCGGCCGCCGTGCCCG # Questionable array : NO Score: 5.40 # Score Detail : 1:0, 2:3, 3:0, 4:0.72, 5:0, 6:0.25, 7:-0.03, 8:1, 9:0.46, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCTCCCCGCGCCTGCGGGGGTCAGCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCCTCCCCGCGCCCGCGGGGGTCAGCCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [14-36] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [45.0-25.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 4 74912-76511 **** Predicted by CRISPRDetect 2.4 *** >NZ_JPRF03000002.1 Kitasatospora aureofaciens strain ATCC 10762 contig_10, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================================================ ================== 74912 29 100.0 32 ............................. ACCATGACCCGACTGACCGAGTACCGCGAGGA 74973 29 100.0 32 ............................. GGCACCGCCACCCCGGCGCCGGCGGTGGCTGC 75034 29 100.0 32 ............................. CCCAGTTGTTCTCCGACAGCGACTTCAAGCAG 75095 29 100.0 32 ............................. GCCCGGACCGGGATGGTCCGGGCCTCTGTCGT 75156 29 100.0 32 ............................. CCGTCGCACGTTCCCGCGTGGGCGTTCAACAA 75217 29 100.0 32 ............................. CCGTTCCCGATCGCCGAGGCCGAGACCGCCGA 75278 29 100.0 32 ............................. GCGGGCTGCGGCTCTGCCGGCTGGCGGGCGCT 75339 29 96.6 32 ......T...................... GTCCGGGCCGCCACGGTTGGGGCGTTGTCGGC 75400 29 100.0 32 ............................. CGAAGGGGTACCTACGGTGGTAGCTGCGGGTG 75461 29 96.6 32 .....A....................... CAGCCGTGACCACCATCCCGCCGCCGCCCACC 75522 29 100.0 32 ............................. TGGGGCAAGGGCCCGCTCACCGCGTCCCAGGT 75583 29 100.0 32 ............................. ATCGGCGACCAGATCAAGGCCACCCGGGCCCG 75644 29 100.0 32 ............................. CAGCGGTGTGGGGGGCGGGGCGGCCGGTCAGC 75705 29 100.0 32 ............................. CTCTCGACCCTCCTCCCCAGCCGCTACAACAT 75766 29 89.7 32 C..........A..T.............. GTCCGCCAGGTCCGCACCCGCTCGGCCGCCGC 75827 29 89.7 33 C..........A..T.............. CTCGCCCAGACGGTCGCTCCGGCTGTCGAAAAC 75889 29 72.4 32 TG.TC...T....AGT............. TAGCCCGCCGCCGCGGTCAAGGCGCCGCTCGC 75950 29 93.1 32 .............AG.............. AGCGGGCAGACTGGCCCGTACCGGCCCAAGAG 76011 29 93.1 64 .................A.........T. TCGGCAACGGGTGAAACGAGGGCCACGGACGGCGGATCAAAAGCGGGTCACTGCGAGTGAAACA 76104 29 89.7 32 C..........A..T.............. ACGCTCAGCGCGGTGCTCCGCATGGCCCAGCA 76165 29 89.7 49 C..........A..T.............. TTCGAGGTCCACGCAGAAGGGCGCAGTGGGTAGTCCTCCCCGGGGCAGC 76243 29 93.1 32 .................A.A......... GGCATCGACGACCACAGCCAGGTCGTCATCAA 76304 29 93.1 30 ...........A.T............... ACGGTTGACGACGCGCCGCGCCGCCAAAGA 76363 29 93.1 32 .............GA.............. CGGAAACGGCGGAGGAGCTTCGCCGAGCCGAA 76424 28 89.7 32 .............AG.......-...... ACGTGGTGGTACTGCACCGGCTGTCGTCACGG 76484 28 93.1 0 .........-...A............... | ========== ====== ====== ====== ============================= ================================================================ ================== 26 29 95.1 34 GTCCTCCCCGCGCCCGCGGGGGTCAGCCG # Left flank : CCACCGACCGGGCTCCCGGGCGGGGTAAATGCCCAGATCGTCCGGCTGACGGCACGCAGGAGTCTCTGGCCGACGCCGACGCTCGGACGATGGTCAACCGCGCCGGCGAAAGTACAAGGCGACGTCGGTGGGTGTCTGGCCGGCCAGGAGCACGAGAGGCTCCAGCAGCCCCTCCCTGAGCGCGTCGGTGCCCTCCGGCTGCGCCTCGGTCAACCGGCACGCGCAGGTCGTGCTGGAAGCTTATGGGCCGAGAGCAAGGGGGTCCGCTCGCTAGGGCACTCCTCGCAGGTGGGGGCCAGCCGCACTGGCGCCGAGGAGACTGCGCTGCCTCCTCCCCGCAGGTGCAGGGCCATCTGCAGTTTGGACCGTCCGACGAGGCCTGCGCCGTGACACGATGAAGACCGCACCTTGACACCACAACAATGAACTGCCAATCACATCCCATCTTGCAGCACAGTCAAGAAGTCGCAAAGACCCTCCTGTGTCGCAGGTCAGGAAGT # Right flank : GGGGGACGCGAATGTGTATCACCGTCCGCGGTTCGGCTCTTTTGCCCGTACCTGCCCGGGGGCGTCAGTGCCCCGAACTGCCTGTGTGGGAGAGTACGACGCGATCATGAATCCTGGGGGTGGATCAGTGCGCACACGTCATCGCGCGGTGGTTGGGGTCGTTCTGGCGGTTCTCGGAGTGTCAGCCTGCTCCGCCGACCCGCAGGGCAGACCGGCGACCGGCGCGGCCTCCGACCGGACGCATCCTCAGGCTCGACTACGCGAAGGCCTGCTGACCCTGGACCGGCTCCCCCAGGGGTTCCAGTTGAACACGGCGGACGTCAACTCGACGACGACCGGTGCTCCGCATACCCCGTCCGCAGTTTCCATCGCGTCGATGCCGTGCTCCGAACTCGGTGTCGAGTCCTTCATGACGGCTCACGCTCACCCCGTGGAGGACGCGGCGGTGGGGGTTGAACGGACGCCGGTCGGCGACGACGATATGGGTTGGTTCGGCCAGG # Questionable array : NO Score: 5.63 # Score Detail : 1:0, 2:3, 3:0, 4:0.75, 5:0, 6:0.25, 7:-0.06, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCTCCCCGCGCCCGCGGGGGTCAGCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCCTCCCCGCGCCCGCGGGGGTCAGCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-27] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [45.0-33.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 5 78105-81642 **** Predicted by CRISPRDetect 2.4 *** >NZ_JPRF03000002.1 Kitasatospora aureofaciens strain ATCC 10762 contig_10, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ==================================== ================== 78105 29 100.0 32 ............................. GTCAGTTCACTGGTCGCACCCTTGATCAACTG 78166 29 100.0 32 ............................. CTTGCCGCCGTGGTGCTGTGCTTGGCCGCCCG 78227 29 100.0 32 ............................. GAGAAGCCTGATCTCCCGGGTGCTGAGGCGTT 78288 29 100.0 32 ............................. ACAGCAAGGGCCTAGAGAGGCATCCATGTACG 78349 29 100.0 32 ............................. ACGACGGCCGCAGCAGCAGCGCCGATCCAGTC 78410 29 100.0 32 ............................. AGACGGCTAAGGCCTGCCCCGAGCGCGACGCG 78471 29 100.0 32 ............................. CCCACGCCCGTCAACCTCGGCAAGCCCCGCCA 78532 29 100.0 32 ............................. GTTGTGATCCCCTTGCGGGCGTTGACGACCTG 78593 29 100.0 32 ............................. CAAAAAGCGCGCGCTCCCATCCCTGCTACGGG 78654 29 100.0 32 ............................. ACGTGCGAGGCGGGCCCGTGGACAACTGCGGA 78715 29 100.0 32 ............................. GCCTCGCCGGCATCGACGTCCTGGTCGTCGAC 78776 29 100.0 32 ............................. GTGATGTTCACGGGCGGGTGCCTTTCGGATCG 78837 29 100.0 32 ............................. CTCGTCTACGCCACCCGCCACTTCCACAACCG 78898 29 100.0 32 ............................. TTGCAGAGCTGAATTCCCCGGTGGTTTCGCAC 78959 29 100.0 32 ............................. ACGGACACGTACTCGTGGTTGTCCTCGGTGTA 79020 29 100.0 32 ............................. TCGCAACCCGGTGCACCATGCACCCACTTTTC 79081 29 100.0 32 ............................. GCGCCCAGGCGCCGTTCTGACGGATGTTTGGC 79142 29 100.0 32 ............................. CCGTACGAGCAGCGCCGAAGCCTGGCCACCGC 79203 29 100.0 32 ............................. GTGCTGTGACCAGGCGGCGAGTAGGTGGTCAT 79264 29 100.0 32 ............................. GCCGCGACGACGAACGTCATCTGCCTCGCCCC 79325 29 100.0 32 ............................. GACGGCCGGGCCCTGTACGCGGTGCCCGGGGT 79386 29 100.0 32 ............................. CCGTACGAGCAGCGCCGAAGCCTGGCCACCGC 79447 29 100.0 32 ............................. GTGCTGTGACCAGGCGGCGAGTAGGTGGTCAT 79508 29 100.0 32 ............................. GCCGCGACGACGAACGTCATCTGCCTCGCCCC 79569 29 100.0 32 ............................. GACGGCCGGGCCCTGTACGCGGTGCCCGGGGT 79630 29 100.0 32 ............................. CCGTACGAGCAGCGCCGAAGCCTGGCCACCGC 79691 29 100.0 32 ............................. GTGCTGTGACCAGGCGGCGAGTAGGTGGTCAT 79752 29 100.0 32 ............................. GCCGCGACGACGAACGTCATCTGCCTCGCCCC 79813 29 100.0 32 ............................. GACGGCCGGGCCCTGTACGCGGTGCCCGGGGT 79874 29 100.0 32 ............................. CCGTACGAGCAGCGCCGAAGCCTGGCCACCGC 79935 29 100.0 32 ............................. GTGCTGTGACCAGGCGGCGAGTAGGTGGTCAT 79996 29 100.0 32 ............................. GCCGCGACGACGAACGTCATCTGCCTCGCCCC 80057 29 100.0 32 ............................. GACGGCCGGGCCCTGTACGCGGTGCCCGGGGT 80118 29 100.0 32 ............................. CCGTACGAGCAGCGCCGAAGCCTGGCCACCGC 80179 29 100.0 32 ............................. GTGCTGTGACCAGGCGGCGAGTAGGTGGTCAT 80240 29 100.0 32 ............................. GCCGCGACGACGAACGTCATCTGCCTCGCCCC 80301 29 100.0 32 ............................. GACGGCCGGGCCCTGTACGCGGTGCCCGGGGT 80362 29 100.0 32 ............................. GCTGACGAGGTTCGGCTACGCGAAGGTCCGGG 80423 29 100.0 32 ............................. CTGCCGCGCTCGCCGCCGTCCGCGCCGCCGAG 80484 29 100.0 32 ............................. TTGACGACGTGCTCGTGGCGACCGTTGCCGTC 80545 29 100.0 32 ............................. GCGTGGTCACCGGGGACGCCGGGGGCCTGCTC 80606 29 100.0 32 ............................. GACCTCGGCCGCACCACCGCCTCGTTGGAGGG 80667 29 100.0 32 ............................. CAGCAGCAGGCCGCAGCTGCGGCCGCGGCACA 80728 29 100.0 32 ............................. CTCGGAGGCGAGATGAAACGCGACGGGGCCCC 80789 29 96.6 36 ......................G...... TCCGCCAGCCGTTCGTCCAGGCCTGCGTCCTTCAGC 80854 29 89.7 31 .....................A.....GC GCTCTTCGGCGCGTCCCAGCGCACCGTCCTC 80914 29 96.6 32 ..................C.......... AAGTGTCACCCCCGGGCCGTCACCCCCGGCCG 80975 29 100.0 32 ............................. TCGGACACCCACACCTCGGGGTTCTCGCCGTC 81036 29 100.0 32 ............................. TCGGACACCCACACCTCGGGGTTCTCGCCGTC 81097 29 100.0 32 ............................. CCGGACACCCACACCTCGGGGTTCTCGCCGTC 81158 29 96.6 32 .................A........... CCGGACACCCACACCTCGGGGTTCTCGCCGTC 81219 29 100.0 32 ............................. GTCAGCCCCGAGGAGTGGGACGTGGCCCGGCG 81280 29 100.0 32 ............................. TGGAGTGCGCCGACCGCAGCGAGGCCTCGCGC 81341 29 86.2 32 ............CC..........C..T. CGGCCGACGACGGCGGCAGCGTTGCCGAAGAA 81402 29 86.2 32 ......T....GCC............... AGTTCATACAGCACTCAGGGAGGGAACTGCAT 81463 29 89.7 16 ...........GCC............... CCACCCGGCGCTGGTC Deletion [81508] 81508 27 89.7 20 C................--.......... ATGGAGGCCGGATCGGAGAG Deletion [81555] 81555 29 93.1 29 ............CC............... GGCATGACCGCTCGGCATCACGCCCGCCC 81613 29 72.4 0 C..T...T.A.....A.....A...T..C | T [81637] ========== ====== ====== ====== ============================= ==================================== ================== 59 29 98.3 32 GTCCTCCCCGCAGGCGCGGGGGTCAGCCG # Left flank : TGCGGGGGTCAGCCGACGACCACCGCCTTCAACACTGGCGGCGCGCTGTCCTCCCCGCGCAGGCGGGGGTCAGCCCCGGCCGTGGGCGTCGTGACGCGGGAGCGCGCCGTCCTTCCCGCGCGGGCGGGGGTCAGCCGTCCCCGAACTACGTGCAGGGCGCCGTGGGCTGGTCCTCCCCGCGCAGGCGGGGGGTCAGCCGAGCTGCCCGGACTGGGAGTTGGTGCAGATGTAGTCCTCCCCGCGCCCGCGGGGGCAGCCGAGGCCGGCACTCTCCAGGTGCCCGAGGTGGGTGTCCTCCCCGCGCCACTGCGGTTGTGTCCAGGGCCTCGCTGGCGGGGCGAGTCCTCCGCGCAGCCGGACGACGTCGCCTTTGGCGTGGCACGATGAGACACGGTTCCTTGACAGCACAACAGCACAACAGCACACCCGCCGTCACGGCCCGCCGTGTGCAGCCAAGTCAAGAAACGGCAAAGGCCCCGCTGCGCCGCAGGTCGGAAAGT # Right flank : CCGCCAGACTCCCGAACAGCTACGGTAGGAGCCGTGGGTGTCCGGTCGAACACACCACAGCCAGGCCGGAGGAGGCGAACCGTTGAGCGCGCAGCCGATCGCGTACGCGGACGTGAATCACGAGGCCGCGTTGAAATACGCCGTGCAGCTCATCGATCACCGGTGGGCCCAGGTCATCGAGGGGCGGATCGTCCTGGTGTCACCCACGTGGGACCACGAGAACGTGGCGGCGAAGATCCGCCGCCAGCTCGACCGCCGCGTCGATGAGCTCGGCTGTATCAGCGGGTCCGGGAACCTCGACCTGCCCGGCTCCCCCAACTGGTACATGCCTGACCTCGCGGTCATCCCCGAAGACCTGGCCAAAGGCGCGGGCGCTCTCACCCCCGACCAGACCCTCCTGGTCGTCGAGGTCACCTCCGAGTCCAATGGCGACACCGACCGTGTCACCAAGCGCAAGCGCTACGCCCAGTACGGTGCCCCGCTCTACCTGCTCGCCGACC # Questionable array : NO Score: 6.13 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:-0.03, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCTCCCCGCAGGCGCGGGGGTCAGCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCCTCCCCGCAGGCGCGGGGGTCAGCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-30] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [35.0-35.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 6 82356-85104 **** Predicted by CRISPRDetect 2.4 *** >NZ_JPRF03000002.1 Kitasatospora aureofaciens strain ATCC 10762 contig_10, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================================================================================================================== ================== 82356 29 86.2 32 C..........G.GA.............. GCCGGCGTCGGGACGATCGTCGCGGGACCGTC 82417 29 86.2 32 C..........G.GA.............. GAGACCTTCGCGGGGGTGACGGTGCCGGCGGT 82478 29 82.8 32 C..........G.GA.............C GCAGATCTTCAAACTCGCCGTGGACAACGGCG 82539 29 86.2 32 C..........G.GA.............. CGGCTGAACCTCGTGCGGGGCATCGTCACGGT 82600 29 86.2 32 ...........G.AG.......G...... CCGAGAGTGCTGGACTCCCGAACCGCAAGGAA 82661 29 89.7 32 ...........G.AG.............. AGCGAGGGTTCCTAACCAGGGAAACCGGAACT 82722 29 86.2 32 ...........G.AG...A.......... CCGAGCCGGCGGAACCGCGCTTCCATGTCCCT 82783 27 86.2 32 .......G...-.-T.............. GGGTTCATCATCGACCAGGAAGTCCCTGCAGA G [82787] 82843 29 100.0 32 ............................. CCGAGGCCCGGGCCACGGAACTGACCGAGGAA 82904 29 93.1 32 C............T............... ACCTGGAACGTCTCGCGGTAGTCGCGGCCCTG 82965 29 100.0 32 ............................. CCGCGGGCCTCGTCGGGGTAGTAGCCGGCCTC 83026 29 100.0 33 ............................. CGCTTCACCGCCCCCGCCGTGGAGCGTCGCGGA 83088 29 89.7 32 .....T.....G..T.............. TCAGGTGATGGTGCGCCGCCAGAGGTCCCCCT 83149 29 100.0 45 ............................. CTGCCGTTGACCGTGATGCTGCGGTGGCCGTGGTCCTCCCCGCAC 83223 28 75.9 2 CG.........G..T..-......CC... TC G [83226] Deletion [83255] 83254 28 72.4 133 .G...T...-....A..AC...C.C.... CGGACTTGTCAAACGCCGACCATGCGCCGCGTGACACGATAAGAACTCGCACCTTGACACCACAACAGCACACCAAGTGGCGCAGACCAGTCGAGAAACAGCAAAGCCGCTGCTGCGCCGCAGGTCAGAAAGC 83415 29 86.2 32 C..........G.GG.............. GTTCCGTCCTGGATTTGGCGCCTGTAGGCGTC 83476 29 86.2 36 C..........G.GG.............. CGGTCGTCGTCGAGGTTGAGGCCGAGCCGAGTGTGG 83541 29 89.7 32 C........A.....A............. GCGGTCTACGCGTTCTGGCGCCTGCCCGTTGA 83602 29 93.1 32 ...........G..T.............. GAGTTCGACCCGACCGCGCTGGTCAAGCGCGC 83663 29 100.0 39 ............................. CGGTGCACGCGGGAGGCCGGGCCGTCGAGGGTCGGCGTC 83731 29 96.6 32 ............................A GCTGGGCAAGGCGAGCATTCAGCCGAACCGGG 83792 29 82.8 32 C........C.C.A.C............. CGGCATGCCTCGGAGGACTCCGTCAGGAGTCA T,A [83810,83815] 83855 29 96.6 32 ..................C.......... CTCGCCGAGTGGATCGCCCGAACAGGGCTGAG 83916 29 96.6 32 ...T......................... GACCCGCATGCACACGCACTGGAACGACACCG 83977 28 96.6 32 ..............-.............. TGAGCGATGCGGGCCCGGGCGCCCTCAAGGAG 84037 29 96.6 43 ...........G................. ACCAGGGCGTGGGCGGGGCTGCGGAAGTCACCGTCATCGGGGG 84109 29 89.7 68 ...........G.AG.............. AGCACGTTGACGGTGCGGCTGGCGGAGGCCCTTTAGCAAAGCCGCTGCTGCGCCGCAGGTCAGAAAGC 84206 29 89.7 32 C............AT.............. CCCCCTCTCCCCTTGGCAGGCCTGGCCGTTGG 84267 29 89.7 32 C............AT.............. GCTGACGAGGGAGCAACCCCCGCGAGCGCGGG 84328 29 89.7 32 C............AT.............. CGAAGGAGGCAGCGGAGGCGCAGGCGGCGTTC 84389 29 89.7 32 C............AT.............. CAATTCGGTGTAGGTGCACCACCGGGACGCCA 84450 29 89.7 32 C.............T..A........... GAGACGAACCCGAACTCGGGGCTCCTCGTGGC 84511 29 89.7 32 ...T...T..............A...... ACGTGCAGCGGCTCGCGCGGCTCGGTGGGCTG 84572 28 96.6 32 .................-........... GTCGCGGACCGCGTCGGCAGCTCCTACCGCGT 84632 29 96.6 50 ............A................ ACGGCGTACGGGTCGTAATCCGCTGAACCCAGCCCTCCCACTGAATCCCA 84711 29 93.1 32 .C....G...................... GAGGAGGCGCTCAAGTTCGCCAGCATCGGTAT 84772 28 96.6 32 .................-........... GCCGTGGGGGCGGGCGTGATCATCGCTTGCCG 84832 29 96.6 32 .................A........... ATGAGCACGTTCTCCGGCATGGTCCGCAACAT 84893 29 96.6 32 ...........G................. CGGCCCACTGGCGAACGCGGGCGTTCTGCCGC 84954 29 89.7 32 C............G...C........... CACGTCGACGGTGACGGGGGCACAGCGGCCGA 85015 29 93.1 32 C............T............... CCGGCATCCCAGCTGGGTCTGACACAGCGGAG 85076 29 86.2 0 A.......G....T..T............ | ========== ====== ====== ====== ============================= ===================================================================================================================================== ================== 43 29 91.0 36 GTCCTCCCCGCACCCGCGGGGGTCAGCCG # Left flank : CACGAGAACGTGGCGGCGAAGATCCGCCGCCAGCTCGACCGCCGCGTCGATGAGCTCGGCTGTATCAGCGGGTCCGGGAACCTCGACCTGCCCGGCTCCCCCAACTGGTACATGCCTGACCTCGCGGTCATCCCCGAAGACCTGGCCAAAGGCGCGGGCGCTCTCACCCCCGACCAGACCCTCCTGGTCGTCGAGGTCACCTCCGAGTCCAATGGCGACACCGACCGTGTCACCAAGCGCAAGCGCTACGCCCAGTACGGTGCCCCGCTCTACCTGCTCGCCGACCGGCAGAACCGCACCTGCACCCTGTTCTCCGAGCCTCACGACCTCGGCTACGCCGTCATCGACGGCCCCCACCCGTTCGGGACCGCGCTCCGGCTGCCCGAGCCGTTCAATCTGACCCTGGACACCACCGCGTTCTGACCACACGAGGCCAGCCGACACCCAACCGGCCAGTAAAGAAAACAGCAAAGCCGCTGCTGCGCCGCAGGCCAGAAAGC # Right flank : GCACTCGCATCGTGTCACCGAGCCGGGCCTCCGGGCGGCGTAAATACCCAGATCGCCCGGTGACGGCACGCCCGAGTCTATGTTTACCGGCGCCGACGCTCGGACGATGGTCAGCCGCGCTGGCGAAGGTGGAAGGCGACATCGGAGGGTGTCTGGCCGGCCAGGAGCACGAGAGGCTCCAGCAGCCCCTCCCAGAGCGCGTCGGTGCCCTCGGGCTGCGCCTCGGTCAGCCGGCTAACGGCCGCCTGCTCCCGGGTCAGCGGTGAGGGCAACATCGGATCGTCGAGGCATTCGTAGATGACCTCCACCCTTGCCAGCAGCTGCTCGCGGCGTTCCTGGGCGGATTCGACGGACTGGGCGTCGCGTGCAGTCAGCAGGGCCGGAACCGGAACGGACAGTGCGGCGTGCAGCTGTCCGAGCGTCGGCTCCTCGGCCAGCTCCGCCACCACCTGGTCGGTCAGCGGAACCTTGCCGTCGACCACTCGTTCCAGGACGGCGAT # Questionable array : NO Score: 4.63 # Score Detail : 1:0, 2:3, 3:0, 4:0.55, 5:0, 6:0.25, 7:-0.32, 8:1, 9:0.15, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCTCCCCGCACCCGCGGGGGTCAGCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCCTCCCCGCGCCCGCGGGGGTCAGCCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-9.70,-9.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [26-21] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [38.3-31.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.78 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //