Array 1 93564-88550 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGGKX010000013.1 Virgibacillus natechei strain DSM 25609 Ga0454132_13, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ================================================= ================== 93563 32 100.0 34 ................................ ATCGAATTACGTGTTTTTCTTCCGTTCGGATATT 93497 32 100.0 33 ................................ AAACATCTAGCGCACCTCCTTATGAAGTATCTT 93432 32 100.0 34 ................................ GAAACTAACGAAATATTGGAATCAATGCCAGGCC 93366 32 100.0 33 ................................ TTTCCCTCTTTTTAAGGCGGCAGAAATGACAGA 93301 32 100.0 39 ................................ ATTGATACGGTGCTGATTATGATCTATACAGGGTTAAGG 93230 32 100.0 34 ................................ CTCTGATAGCAAAACTCCATCTATTGATTTCCTC 93164 32 100.0 34 ................................ TTCCTCAGCTTGCTTAGGCTCGTCCTTCTTAACT 93098 32 100.0 34 ................................ CCTTTAAATCTGTACTTCTCCAATCTGTCCCCCT 93032 32 100.0 33 ................................ ACGTAATTTAGGCGGATCATCCAATCGTCCTGC 92967 32 100.0 34 ................................ TCTTAGTATGAGCACCGTTTTTGGTTAACGGCTT 92901 32 100.0 34 ................................ ATTTACCAAATGTTTATTTTGTTCAAGTGTTGAA 92835 32 100.0 34 ................................ TGAAAAGTATAAGGAATATTTAGAAACAGCAAAA 92769 32 100.0 33 ................................ CCCTTTATTTGATAATCTTGACAGCAGAATTAG 92704 32 100.0 33 ................................ TTCTTGCAGATTCCTTTGTGGCAACTTGATAAA 92639 32 100.0 34 ................................ CAAGATTGTACCGTTACGGATGCAGAAAACGGCG 92573 32 100.0 36 ................................ CAATAATCCAGTTTGGCTTTCGGAGGATGCGGGGGA 92505 32 100.0 34 ................................ TCCAATAACGCCCATGAAGCTTATAAATATCACG 92439 32 100.0 34 ................................ TTCTGACGCTTTATTTTCTTACTCAATTTCTTAT 92373 32 100.0 35 ................................ ATCAAACAGATCATCTCGGAGAGGGAAGAGGAGAA 92306 32 100.0 33 ................................ TTGGGGTAATTAACAGTGAGCGTGAATTACCTA 92241 32 100.0 34 ................................ AAGTAAAAACTCATCGTATATTATCGTACAGACA 92175 32 100.0 33 ................................ CTCCTTTAATTAGCTATAAATATATAAATCTCC 92110 32 100.0 36 ................................ AAATGGATGGGGGTGGCCTGTATGCGAGTAGAGGTT 92042 32 100.0 33 ................................ CAATTAATGCCCTCTTGACCCGCTCTAATTTGT 91977 32 100.0 34 ................................ TTTGGTAATCTGAGCGAAATCCACACCGTTTTCT 91911 32 100.0 34 ................................ ACACATGCTACCAAACATGCAAGAAGCTGTGGCA 91845 32 100.0 37 ................................ GCCACTAATTGCCCAGTATCGTCAAGGTGCGGTGTCC 91776 32 100.0 35 ................................ TGAAAGTAAAACCAATCAAAACGATAAATTACAAC 91709 32 100.0 35 ................................ CACATGATCGCTACTTTTTGATCTAACATATAATG 91642 32 100.0 33 ................................ AATTTGGTGGTGTTGAATGGATAGTGTTAGACC 91577 32 100.0 49 ................................ ATTAGTAGATGAAGAATTAGAAGATGAAGAATTAGAAGATGAGGGATAT 91496 32 100.0 35 ................................ GTTAGAGGTATGGGTCTACCCTATACTCGTTGTGA 91429 32 100.0 34 ................................ TTTTTATCCCTGTCTTTGAACCAGTCGGGGACAA 91363 32 100.0 34 ................................ AATCTTTTTATTTCAGCAGAAACCTTACTATTTC 91297 32 100.0 35 ................................ ACTGTCGGCTTGCTGTGAATCATAGTGAAATAGTT 91230 32 100.0 34 ................................ TCCATTCAACTCATACAAATACTCTGTGTAAGGC 91164 32 100.0 35 ................................ AAAATATTTCATTGTTTTTCCTCCTTGGTTTAAAC 91097 32 100.0 35 ................................ CGACCAGTCCATGATCCAATTTGTGGTTCGGCCAG 91030 32 100.0 34 ................................ AGTAAGTAAGACAGAATATACTCGGGGGTGGCGG 90964 32 100.0 34 ................................ AAAGTGCGGATTAACAGCCTTTTGTATTACTGCC 90898 32 100.0 33 ................................ ATCCGGCTCTCTACTAATGTTTTCAGCGATCTT 90833 32 100.0 34 ................................ ATTTCATAGTCAACTTCATCACCTTCATAAATGA 90767 32 100.0 33 ................................ CTTTTTCTTGGCAGGAACATCATCAACTGCGTA 90702 32 100.0 33 ................................ CATTTAAGCAACCTCCGATTTCACTTTATTTTC 90637 32 100.0 33 ................................ TTTAAATTCCAGGTCTTCTGCTAGCTTTGAATA 90572 32 100.0 34 ................................ TTAAAGTTTCGCTGAACAGAAAAAGCTACCGCGG 90506 32 100.0 33 ................................ AAAAAACAGCAACCTAAGTACGTTTATGATGAC 90441 32 100.0 35 ................................ ATACAAACTACCTAAAGAAATGAAGACGTGACAAT 90374 32 100.0 33 ................................ ACCTCGAATGTCGTCTTGCTTACCCAGGGTGTT 90309 32 100.0 35 ................................ TCCAATTCCGCTTTTGTCTTCGGGCCATAATCTCC 90242 32 100.0 33 ................................ GCCAACTTTTTCAATCGTGCCACCTGCGTCGTC 90177 32 100.0 36 ................................ TACAACCCCGATTTGAAACGTTTCATGAATCGTGAC 90109 32 100.0 35 ................................ ACCATCTGGGATGAATCATTGATCAATAAAATCTA 90042 32 100.0 36 ................................ GAATTTGAATTAGCTGGCGCTGTACATGAAACTAAA 89974 32 100.0 33 ................................ TTGTTTGGTGATCGGCTGCACGCATTCAAATCC 89909 32 100.0 34 ................................ GTTTGAAGAATATGACGATCATGACGAATCGTCT 89843 32 100.0 33 ................................ TTGCTCTCTCCGATGTAGTTGTCTAAACCTGAT 89778 32 100.0 35 ................................ TCCAGAACGTTTAACTTGTCGTCATCCACAAGCCC 89711 32 100.0 34 ................................ TACTATATCTGACATTTGGGATAAGGTCATGGGG 89645 32 100.0 35 ................................ TACGAATCGTAATATTTCTACTATTGTTTGTACGC 89578 32 100.0 35 ................................ CATAGCAGGTATCGTCATTGCGTATTTAGGTTACC 89511 32 100.0 36 ................................ CATGTCCAACCAATCGTAATTGTCCATCGGATCGTC 89443 32 100.0 33 ................................ TTTTTTCCAATCAAAATGTTCGGGGTAACTTCT 89378 32 100.0 36 ................................ AATTGCATGTTGTTTCCTGCTCTTATGCTTGCAATG 89310 32 100.0 33 ................................ TGTCTTCGGTTTATCCACTATAGGAACAATGAA 89245 32 100.0 33 ................................ TATCTAGGCACTAGCAAAGAAACAGTTTTAAAG 89180 32 100.0 36 ................................ TCGTCTAAATCATTGGTTGTCAACGCAAACACATGT 89112 32 100.0 33 ................................ ACTCTAACGACCCTACAGGTCAAGCTGTTTGGG 89047 32 100.0 34 ................................ TCCAGAAGTGGCGAACATGGTAATTATCCTGCCC 88981 32 100.0 34 ................................ AACACAAATCATGTTAAATTTATTTCTCAAACGT 88915 32 100.0 34 ................................ CTAAAGCAGACCGCAATTCATCGTTTACATTTTC 88849 32 100.0 35 ................................ AATGTTCCAACGATTCAACGCTTCCATGGCATTGT 88782 32 100.0 35 ................................ TTTAATAACGATATCCAACTCCAGAAGAAACTAGA 88715 32 100.0 33 ................................ CATATCATGATGAACTTTGCTGAATGACTTCAA 88650 32 96.9 34 ..................T............. GAATGTGGAAAGGGTATTGTTATGGAAGATATGA 88584 32 84.4 0 .............T....A..A......T..G | C,A,C [88552,88556,88558] ========== ====== ====== ====== ================================ ================================================= ================== 76 32 99.8 34 GTCGCTCCTTATACAGGAGCGTGGATTGAAAT # Left flank : CTCCTTATACAGGAGCGTGGATTGAAATATCGAATTACGTGTTTTTCTTCCGTTCGGATAT # Right flank : AGATAAATAAGGCACTATTATTAAGGTATTATTGGGTTCATTGTAAAATCAAATGCAACAGTTAAATAAAATAGAAAGCCACCGTGAAATCGTGTAGTATTAATGTTGACCAAGACAAATAAACTCACGGGGGTAATTCACGATGGCTCAGAGTAATTCTAGCACAAAAAAACGAACTTTTACACATTTAACCGATACAGAGAGAGGCGAAATTGTTGCTTATAAAAAAATGGGACTTTCACTTAGAGAGATAGCCAAAGAAACAGGTCGCCATGTTAGCACGATTACACGAGAACTCAAATAAGGCTCCGTGCAACAAATTGATACGAATCGAAAGTCTTCGCCTATTATCCAGACGCAGGCGCTCGCGTTTATCAGAACAATCGTGAAAATTGTGGTGCCCACTCCACTGCGATGAAAGCCTGGGAGTTTATAGGTTACACGGAGGATAAAATCTTACAGGATAAATGGTCTCCGGATGCAGTTGTCGGGTACGCAAA # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCCTTATACAGGAGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.12%AT] # Reference repeat match prediction: R [matched GTCGCACCTTATATAGGTGCGTGGATTGAAAT with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-3.80,-2.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,9.41 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 1547-60 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGGKX010000030.1 Virgibacillus natechei strain DSM 25609 Ga0454132_30, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 1546 32 100.0 34 ................................ CACTGGCTCATCGTTGAAACTGTAAGCAAAGAGA 1480 32 100.0 34 ................................ AAATTGATGGTGGCCTGCCAGACAATCAAGTGGG 1414 32 100.0 34 ................................ ATCAACTACCCCAGGCTTGCCTACACTGTTGGCA 1348 32 100.0 33 ................................ GATTTAGAACAGAAGTAGTGGAGCAAATACAAC 1283 32 100.0 33 ................................ CACTCTGCCATTATAATTTTCCCCCTTTAATTA 1218 32 100.0 35 ................................ GATTCTTACATACCAACCTGCCCCATCATTAAAAC 1151 32 100.0 36 ................................ AATAACATATTTTAAACCTGCTTCACCGCGCTCGCC 1083 32 100.0 34 ................................ AATCGGTACAGTTGCTAGTGGAGCAACAGGAAAC 1017 32 100.0 36 ................................ CACCCATTCCTTTCTACAAATTCGTATGTTTTCATC 949 32 100.0 33 ................................ AATTTGCAAGTTAAGGTTTTGCTCAGCAAATCT 884 32 100.0 35 ................................ TATCTCCAGCTAGATACGGGCCGTCTGCACCTAAT 817 32 100.0 34 ................................ TACATTTTGCAGGACGCTAGGCATATACAGCACC 751 32 100.0 34 ................................ TGAAGGCATGTCTTATTTAGCGATGGCTGGATTA 685 32 100.0 35 ................................ CTTGCTAGGTCTTTCGAGAATTTAGGAGACGATAC 618 32 100.0 34 ................................ TGTGTAGCGATTTGGCCGATTGATCTACGCTGGT 552 32 100.0 33 ................................ TGGGAAATTAAAATGCAACCGTTGTGGCTATTC 487 32 100.0 34 ................................ ATCATATAAATCAGTTAATACGCGAGCGCTCTGT 421 32 100.0 33 ................................ AACCTTCTTAGGTTATGGTAGTACCGAATAAAT 356 32 100.0 35 ................................ CTTATCATTTAGATATGGAAATAAATAAATAATCG 289 32 100.0 34 ................................ CCTTATATTTTCAAAATCTATATACTTAACATTA 223 32 100.0 34 ................................ ATTTTTGATTCCTCCTAATTTTTTATTGATTCGT 157 32 100.0 34 ................................ TAAAATGCGCGTCTGCCACAAGTATTATTTTATT 91 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ==================================== ================== 23 32 100.0 34 GTCGCTCCTTATACAGGAGCGTGGATTGAAAT # Left flank : GGAGATCTTGATGCTTATCCTCCTATTTTGATAAGGTAGGTGTTTGAATATGTTAGTCTTAGTAACATACGATGTACAGACATATACGAATGGTGGCAAAAAGCGTTTACGAAAAGTTGCAAAAAAATGTGAAGAATATGGCGTTCGTGTACAAAATTCCGTATTTGAATGTATTGTAGATAGTACGCAATTACGTCAACTTGAAATAGCACTTGAAGAAATAATAGATCCTTCAGTTGATAGTTTACGTTATTATCGTTTAGGTAATAATCATGAAGCAAAAGTGAAACATGTGGGTGCGAAACCTGCAATTAAAGTGGATAAACCTTTAATTTTTTAAGAGAGGCGAACCTTAAGTGAACATAAAAGTACTGGGAGGTTCGCGTAAAATCCATGTTAAAATCACTTGAATTTTTGTATATATTTAACTCGTGGTAATAAATATTCACCTGTCAACACAACATATAGTGTTTGAGTTATAGCGATACCTACATATCGCA # Right flank : TATCGAATTACGTGTTTTTCTTCCGTTCGGATATTGTCGCTCCTTATACAGGAGCGTGGA # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCCTTATACAGGAGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.12%AT] # Reference repeat match prediction: R [matched GTCGCACCTTATATAGGTGCGTGGATTGAAAT with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-3.80,-2.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [55.0-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,9.27 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //