Array 1 45100-47500 **** Predicted by CRISPRDetect 2.4 *** >NZ_VSVH01000006.1 Ligilactobacillus salivarius strain FJLHD32M4 Scaffold6, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =================================================================================== ================== 45100 36 100.0 30 .................................... TTTCCAGGTAGGATAAAAACATTTGACATT 45166 36 100.0 30 .................................... GGTCTTATTGAACATATCACGTTTGAATTG 45232 36 100.0 30 .................................... GCAAAGAATTGTTAGCAGGCAAAACTCCAC 45298 36 100.0 30 .................................... GACGAGCGCACGTTTAACGTACCTGGGCAC 45364 36 100.0 30 .................................... AATCACTGGTAATTTTTTTAAATCTTGTGA 45430 36 100.0 30 .................................... ACTAACAGCACTAACTTTTTTAAGATTAAA 45496 36 100.0 30 .................................... TAAAACTGGAATAGGTGGAGCAATTGCCGA 45562 36 100.0 30 .................................... AAATCAAACGGAAAGTTAGCGGAGTTGCAA 45628 36 100.0 30 .................................... TTTCACTGGTAATTTTTTTAAATCTTGTGA 45694 36 100.0 30 .................................... ACTAACAGCACTAACTTTTTTAAGATTAAA 45760 36 100.0 30 .................................... TAAAACTGGAATAGGTGGAGCAATTGCCGA 45826 36 100.0 30 .................................... AAATCAAACGGAAAGTTAGCGGAGTTGCAA 45892 36 100.0 30 .................................... TTAGCGGTGTTACTAATGTACTTTATCCAA 45958 36 100.0 31 .................................... CTTTTTATGACGAAAAGACAAAGGAATTTAA 46025 36 100.0 30 .................................... TTTTTATGACGAAAAGACAAAGGAATTTAA 46091 36 100.0 30 .................................... GTGCGATACGTTCAGTAACATATCTGTGGT 46157 36 100.0 30 .................................... GGCTCAAAAAGTTATCTGGGGTGCGTTCTT 46223 36 100.0 30 .................................... CAATCATAGATTTTATAAAAACATTGTTAA 46289 36 100.0 30 .................................... ATATTTTTACTTGAGTTGCGAAGGGTTGCA 46355 36 100.0 30 .................................... TAGACTTTTGATAACCATTCTCGACCATGA 46421 36 100.0 30 .................................... AAACACTCCAAGTGTTCAAGCAGCTAGAGG 46487 36 100.0 30 .................................... AGATGTTTTAACGTTTATCAACTACAACAG 46553 36 100.0 30 .................................... AGATGTCGGTGGAATATAGCCCATGAACTG 46619 36 100.0 30 .................................... CCTACTTCTTTTTTATTAATCGCATTATTG 46685 36 100.0 30 .................................... TTAACCATCGCTAACATTGGTCGAGCTACT 46751 36 100.0 30 .................................... AAACTGTTTTATTAACGCATTAATGAAGAA 46817 36 100.0 30 .................................... CGATAAGATTGCAGAAATTACTAACTTGAT 46883 36 100.0 30 .................................... GAACCATTTACTTCATACGTGATGTTGGCG 46949 36 100.0 30 .................................... TATCTAATGTATTTTATGGATCACGTCAAA 47015 36 100.0 30 .................................... TTGCTGTCTTACACCTATGTCAATTCAACT 47081 36 91.7 31 .....................G..A..A........ ACAACTGGAGTTTGAGTAACGTTTAGCTTGT 47148 36 97.2 30 ..........T......................... AAGTTCACACGAAAAGCCCTATGACAATAC 47214 36 86.1 29 ..........T.........T...A......G.T.. ATCTGCGTTCAGTTGGTGTCTCAATGCTC C [47247] 47280 36 94.4 83 ........................A..A........ ACAACTGGAGTTTGAGTAACGTTTAGCTTGTGTTTCAGAAGTATGTTAAAAACCTATTATATGTTATAATATGAAAGTGTTTA 47399 36 83.3 30 .....G....T.........T.........G.T..T AGTAATTCACCGCTAGTTAAGTGGTTTTTT 47465 36 80.6 0 ..........A.........T...AG...CG..G.. | ========== ====== ====== ====== ==================================== =================================================================================== ================== 36 36 98.1 32 GTTTCAGAAGGATGTTAAATCAATTAGGTTAAGACC # Left flank : TAACAGACCGAATTAGTAAAAAGTATATGAATGTATTAATTAAGAAGATTATTGAAGACATCACAGACGATGAAAGACAAGCAATACTAAATCAGTAAATAGTTTGTATGATCGTATTCGAGAGGTTTTGTATAAAATTGATATACCATTACAAGTAGATTATGACAATGATTTAACAAGACTATTTAAGTATTGTCAGGTACATACAGAGGCATTGCTATGGAAAAATGCGTATGATAGAATATCTTCAGATGTTAAATTGCATGTGGAACTAAATAGAGAAAGAATTATAGGTCTAACCAATGTCGCACATTATCTCACTAAAGAAGAGTTTCAGGAACTTGTAGGTCTTGTTAAGGCGACTAACTCATCAATGTTTATAATTGAATTCACAGAAAAGAATGGTCAGAGATTCTTTGAAAGCTGTGATAATTACTACATTGATGAGGATTATATTGATTGGTACTAACGAATCGTTAAATTTTGATTATAAAGTAACG # Right flank : CTAAAATACAAAAAATATTTCATAATATTTATAAATCTATCAGAAATTTTCTGGTAGATTTTTTTAGTGTAAAAATTTTTGAGTTTAAGATATATTATGGTTGATAATGTAATATTATATGATATATAATATAGTTGAAGATGAGATATAAAAGAAAGTGAGGGATGATGATGAAAATTCAAGTTAGTTCTGATTTACTAGATGGTTTAGTATTAGCGCTTTTAGATAAGCAAGATTATTATGGATACTCATTGACACAGGATATGCAAAGAGCAATTTCAATTTCAGAATCAACACTCTACCCAGTATTACGAAGGTTAAAGAATAATGGTTTATTAGAAACATATGATCAATCATATCAAGGGAGAAATCGTAGATATTATCGCATAACAAATAGTGGGGAAGAACATTTAGGAAGAGTTAAAAAAATGTGGAGCGACTACAAAGTTAGTTTAGATTCAATTTTCGAAAAAAACTAGGGAGGGGGAATAATAATGAAC # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:-0.09, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAGAAGGATGTTAAATCAATTAGGTTAAGACC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.70,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-25] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [73.3-85.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.27 Confidence: LOW] # Array family : NA //