Array 1 187398-184437 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAIQEH010000003.1 Salmonella enterica strain L5-39 contig00003, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 187397 29 100.0 32 ............................. CCCCACAAATCACTGGTCGATTTCGTCGCACG 187336 29 100.0 32 ............................. GTTGCGACTAAACCGGACCAGCGCCCGCCCAC 187275 29 100.0 32 ............................. CCAGTGCTCGCTTGCTTCTACCCGTCCCGATC 187214 29 100.0 32 ............................. GCGGTTTTATTCGGCAGGGCATTGAATTTAAT 187153 29 100.0 32 ............................. AATTATCTATTTTTCTGGCCCGTTTTCAATGC 187092 29 100.0 32 ............................. CCCGCGTTTTGCGTCAGCATATAGCCAATATG 187031 29 100.0 32 ............................. GCTTTGCATACGTCACTCATAGACAAATCACG 186970 29 100.0 32 ............................. CGATTCTGGTAACGTCGCTGTACTGCCTGACA 186909 29 100.0 32 ............................. GGCGCATGAAACAACCGGCGGGGATCTCTATT 186848 29 100.0 32 ............................. ACAGCGTTAAAATGACGCCCGACGTTGTGGTG 186787 29 100.0 32 ............................. AGGGCTAACACATCACCATTATTACCAAATTC 186726 29 100.0 32 ............................. GACATTGCCCGCTGGGATGCGCGGCAACTGGA 186665 29 100.0 32 ............................. AATTGCCTTTGCTGCCCGGCTCTTCTACGGTC 186604 29 100.0 32 ............................. AGATGAATAACGCGATTTACGAGGTTACGTAT 186543 29 100.0 32 ............................. ATTAAATACCTGGAAAAATACCCCAAAGGGGC 186482 29 100.0 32 ............................. AAAAATAGCGATAACGCGCCAGATCGTGAGGT 186421 29 100.0 32 ............................. TCATTTTTTATTTTCACGTTCGGCTTTCTCAC 186360 29 100.0 32 ............................. TTAAATCGACCTACCTGTTAAACGCGTCAATG 186299 29 100.0 32 ............................. TTCGCAGTAACAGTGTCGTTTTTATAACCGAC 186238 29 100.0 32 ............................. GCGGCATTAATGCGGGATTGTGTTTTCTGAGC 186177 29 100.0 32 ............................. ACGGCAGAAACAATGGCGTCAGTAGCTCAGGA 186116 29 100.0 33 ............................. CAGTCAATGAGACTTTTCACACTGATAATGTTG 186054 29 100.0 32 ............................. CCCCTATTCCTGATCATCGCGCATTTGGCGGC 185993 29 100.0 32 ............................. ACCACCACGTAGCCGTAGGCTGTCGCCAGTTG 185932 29 100.0 32 ............................. GAATTACGTTGCGAACAGCGCGGCGAGAGACG 185871 29 100.0 32 ............................. CGGATTGCATTCAATAAACATGTAAATAGGAA 185810 29 100.0 32 ............................. TTACCGACACCTGCGTGGCTAGCGTTTTTTCG 185749 29 100.0 32 ............................. CCAAAAACATTGAGTGCTTCTTGTACGTTCAT 185688 29 100.0 32 ............................. CCTGCGTGCGTGCAACGGGTAACTAAGGGGAA 185627 29 100.0 32 ............................. CATTGGGTAATTATATTCGCAATTTAAGCGAT 185566 29 100.0 32 ............................. ATATTTTAAACCAGACTGACGCGATGATCGTT 185505 29 100.0 32 ............................. CCATCAAAGCTGCTGCGCTGGTGGCATAACCC 185444 29 100.0 32 ............................. ACTACGCGGCATGGCTGAACCCCGGATTCAAG 185383 29 100.0 32 ............................. CCCCAGGCGGTGCCTACGTCGGATGAAGAGCC 185322 29 100.0 32 ............................. CCGTGGAAAGAACCAGAGCGTTGGTTATTGGT 185261 29 100.0 32 ............................. CTCCCAAACCTCTACAGCGCTACCAACAGGAA 185200 29 100.0 33 ............................. GATCGCCCACCGGCATAAACGCGATAGCCGCGT 185138 29 100.0 32 ............................. CTGTTCCCGATCGCTTTATATCGGGGGCCATC 185077 29 100.0 32 ............................. TACCAGACGGACAGCTACGATACCGCTGACGA 185016 29 100.0 32 ............................. GCAGTACTGGCTCTAAATTTAAAACTGGTCAG 184955 29 100.0 32 ............................. TGGCCCACGTGCGCGGAGACGGCAACCGGTTC 184894 29 100.0 32 ............................. TCTCGACGCCAGATTTAATATTAATTCCCGCA 184833 29 100.0 32 ............................. CAGACGTAGAGATTGAGAACACAAATGACTCA 184772 29 100.0 32 ............................. GATTGCTCAGATTGGGAATTTGACCAGCGACC 184711 29 96.6 32 ........................G.... ACTATTTTTCAGGTGAATTACAGCGCCGCAAC 184650 29 100.0 33 ............................. GCGAAAAATTGACGCTATCAGGGAGAGCGCCGG 184588 29 100.0 32 ............................. CCGGAAAACTATCTCTATCGCAGGCTGGATAT 184527 29 100.0 32 ............................. GCCGTGAACGCGTCGCCCGCTTTTTTGTAGCA 184466 29 96.6 0 ............T................ | A [184439] ========== ====== ====== ====== ============================= ================================= ================== 49 29 99.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCCCTGGGGGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTAGTCACGGAAAACGTACCGCCGCGCCTGCGGGGTCGCCTTGCCGTCTGGTTACTGGAGATTCGTGCCGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATTTTACCGTTGGTAGTTTGTTAGGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTTTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 205030-203657 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAIQEH010000003.1 Salmonella enterica strain L5-39 contig00003, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 205029 29 100.0 32 ............................. ATTAAATTTTCGGGAACGGCGACGGAATCCGG 204968 29 100.0 32 ............................. AAAATCATCATGGCCAGCGCTGGCGCGCTCGC 204907 29 100.0 32 ............................. AATGATTATATCGATCGACCAATCGATGAGCA 204846 29 100.0 32 ............................. TCGGTGAGACAAATCATTCCAGATTGATCAAC 204785 29 100.0 32 ............................. AATTTAAACAGTAATTTAAAATTGTTAGCGTC 204724 29 100.0 33 ............................. GCAACGGCGGCGCGGCATTCTGCGGTGCAAATA 204662 29 100.0 32 ............................. GATTCCAGCGCGCCAAAATCAGGAGATTCCGT 204601 29 100.0 32 ............................. CCCCCGGCATTCGGCTATGCCTATTCATATGT 204540 29 100.0 32 ............................. TGGTCACTACCGTCTATCTCTTCCGGATACAC 204479 29 100.0 32 ............................. AACCCGGCAGCAGGGGTAATTCATACAGCATA 204418 29 100.0 32 ............................. ATTTGGTGAAGGGCGCATTTGAGGACCCGTTA 204357 29 96.6 32 ............T................ CTTGCAGCCGAATACGGTATAGAGTGGGACGG 204296 29 100.0 33 ............................. GCCTGTCCTGCGTCAGCGTTACCAGCTTCATGC 204234 29 100.0 32 ............................. AAATTCAATTACGACTCGCTGCCTGACGGGGT 204173 29 100.0 32 ............................. ATTTTGAGCGGACGGGAGCTGGCCGAATGACC 204112 29 100.0 33 ............................. CGGTTTTTACTTTTGCTGCATTCCGCCTCCCGG 204050 29 100.0 32 ............................. TCCTGGCAGGAATACAAACTTGTGATGCTGCG 203989 29 96.6 32 .............T............... ACCGCAGGCGCAGCGGCAATATTCTGGTTCAA 203928 29 96.6 32 .............T............... TCGTTTCTGGGAGCGGGTCTTTCCAGTATTGC 203867 29 96.6 32 ...........C................. CAGGGGAAGAGGTTCCGGCCCAGCAGTTCTAT 203806 29 100.0 32 ............................. CTGCTGGGTCGTGTTTGACTCAACGCTCCCCA 203745 29 100.0 32 ............................. ATTTTAGAATTACGCATTGAGCCGATGATGTA 203684 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================= ================== 23 29 98.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATGATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTCGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCATGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCACTGCCGATTGGC # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //