Array 1 62320-61511 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAABKZ010000002.1 Moraxella catarrhalis strain AS012769 AS012769_2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 62319 28 100.0 32 ............................ TTTTATCATAATTACTTGTTATTTCTTATTAT 62259 28 100.0 32 ............................ CACTCAATGTATAACACCGTCCGCACCAGTGA 62199 28 100.0 32 ............................ ACGTGTGAAAAAGCGTGTCACTGCATCATAAA 62139 28 100.0 32 ............................ TCAGCACATAGACATGCGATTGGTGATATTAC 62079 28 100.0 32 ............................ CGAGTTAAATCAAAGCATTGCTGATGCTCAAA 62019 28 100.0 32 ............................ ATATCAATCCCATAGTGCCTGTGGGTTGACAA 61959 28 100.0 32 ............................ AGTAATGGTGCGGTTGCTTTAATTTTACCTAC 61899 28 100.0 32 ............................ ATTTCAAACAAAATAGCACGCAAACGGTTAAT 61839 28 100.0 32 ............................ GGGTGGAGAATCTGAGAATTTTTGTATAGCGA 61779 28 100.0 32 ............................ AAACCAACAACAGCAGTAGAATTTACTACTTT 61719 28 100.0 33 ............................ TTATTGATTATTACATTTCAGCGTTGAGATTGC 61658 28 100.0 32 ............................ CTGAGCTGACTGCCCATTTGGTTTTTAGCACA 61598 28 100.0 32 ............................ TAAACCTTATTGGTGCGTCTGCTGTCAATTTT 61538 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 14 28 100.0 32 CTTCACGACCGCACAGGTCGCTTAGAAA # Left flank : TTCAAATCGGTCGGTTTGAGCGTATTCATAATAATACAAATCCATGTTTAATGATTCAATTTTATCCTAACAATTTTCAACATCATTTAATATGATTTTATTGGATTATAAACTAAAAATAAATTTATACCAATCATTTTTTAATTGTATTTAGCGATTAAAATGTTTTAAGATAACCCAACCAGAAGATGGAAAAATAACTGATTGACCCTTTATTTTTTTACTATTTAAAAACTTGAATATTTTCAATAAGTTATAACATGAAGATTTTTGATTGGGTTTTTGACAAATTTTATCATAATGACTTGTTATTTCTTATTATTTTGGTTTATACTAACTCTTCACGACCGCACAGGTCGCTTAGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTAAATACTAACTCTTCACGACCGCACAGGTCGCTTAG # Right flank : TTTTGTTCTATGGCTACGCTGATTATTTAAAATTTTTGTGCCAATCCCTTGAAAATTTTATCCTTAACCATTATGAAGATGGGGAATTTATATTAACTTTTTTGGGGCAATTTATGACCGAGCAAACCACCGAACAAACCACTATGGAAGAGATTATGGCTGAGACGACAACCGAGCAAGTCGAAGCACTTCATAGCCAAATCCAAGCGCTAGAAAATGAAGTCAAAGAAGCCAAAGAGACTGCTGCGCGTGCCAATGCCGAAAGCTATAACGCCCAACGCCGCATGGAACAAGAAACTGACAAAGCCAAAAAATTTGCACTACAAAAGTTTGCCAAAGAGCTTTTGGAGGTGGTTGACAACCTAGAGCGCGCCATTAAAGATACTGAAGAGACAGGTGCAGATGACGCATCACTTAAAGGCATTCGCCTAACACATAAAGTACTGCTTAGCGTTCTTGAAAAAAATGGCGTCGTGGCCGTGGGTAATGTCGGTGATACA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCACGACCGCACAGGTCGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTTCACGACCGCACAGGTCGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.10,-7.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [71.7-33.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.24 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 926-778 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAABKZ010000021.1 Moraxella catarrhalis strain AS012769 AS012769_21, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 925 28 100.0 32 ............................ ATAGTGCCTGTGGGTTGACAAATCTTTGCCAA 865 28 100.0 32 ............................ ACCGACCCGCTGTTGATATTACTTTTTCAGCA 805 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 3 28 100.0 32 CTTCACGACCGCACAGGTCGCTTAGAAA # Left flank : ATACTAAC # Right flank : ATAGTGCCTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTTCAGCACTTCACGACCGCACAGGTCGCTTAGAAAGCATTGAGCATTGATTTTTTCACGCACTTTAGCTTCACGACCGCACAGGTCGCTTAGAAATAATTATGGAGACTTTTTTATGATTTATGTCACTTCACGACCGCACAGGTCGCTTAGAAATCTTCACTGGTGCGAATAAACATCCAGCTATCCTTCACGACCGCACAGGTCGCTTAGAAAAGTGATAGGGTATTTTCCTGCCACTTTCAAATCTTCACGACCGCACAGGTCGCTTAGAAACAGTGTACCACCACCAGTTAGACCATTACCTGCTTCACGACCGCACAGGTCGCTTAGAAAGCACAAGAGATTATTTTGGTTCCGCCAAGCTCTGCTTCACGACCGCACAGGTCGCTTA # Questionable array : NO Score: 5.67 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCACGACCGCACAGGTCGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,10] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTTCACGACCGCACAGGTCGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.50,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [6.7-10.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.78,4.87 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //