Array 1 17344-19752 **** Predicted by CRISPRDetect 2.4 *** >NZ_LDRJ01000047.1 Rothia kristinae strain SA15 contig_47, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 17344 28 100.0 33 ............................ CACGTGCTCGGCTTTCAGGAGCCCGTTATCGTG 17405 28 100.0 33 ............................ GGTGTGGGAGTCCATCAGCACCGGCGGCGGCTC 17466 28 100.0 33 ............................ GGATCCCGCGTTCATGATCATCGTCAGCTGCCC 17527 28 100.0 33 ............................ GGGGAATGATGGGTGCATAGATCGGCGCCTCGT 17588 28 100.0 33 ............................ CGAGTCTCCGGCCTGCAATGCCAGTGACGTTGC 17649 28 100.0 33 ............................ GGGCAGCACCTCCGGGAACAGCTCGGCAGCCGC 17710 28 100.0 33 ............................ CCGGGCGCTCTCGTCCTTGTACGCAGTGAGGGT 17771 28 100.0 33 ............................ CCAAGATGCGCGGCGTCGTGGGCTATCTGCTCG 17832 28 100.0 33 ............................ GCGAAAAAGTGGATGGGGTGCTCGGAATCGATG 17893 28 100.0 33 ............................ CCATCAATGAACCATCAAGGGGAACCCCTACTG 17954 28 100.0 34 ............................ GAACCCCCGTGCGCCAAGCGCCGGGGGTTCGGTG 18016 28 100.0 33 ............................ GCATGACCGAGAAGAAGAGCGCAGCCGATGAGG 18077 28 100.0 34 ............................ CGGCCGACGATGCCGAGCCGGAGTCAGAGAACGT 18139 28 100.0 33 ............................ CTGGGTGTCGAGGCCGGTCGCATCGGACAGTGC 18200 28 100.0 33 ............................ GCTCATGGGATCCATTGTGCGCCTTTCTAGAGG 18261 28 100.0 33 ............................ GACCGCTCGGTCGCTCTCGGGCTCAAACTTCGA 18322 28 100.0 33 ............................ GTTTGGACGCGCTGCTGGAGCAGTGAGATGTCA 18383 28 100.0 33 ............................ CCGAGGACACCATGACCGCAATGCTCAACACTC 18444 28 100.0 33 ............................ GCGCCTCGGGGCAGCCCCTGGGAGAGCAGGTGT 18505 28 100.0 33 ............................ CACTAGCCCCTTTGCCTCCAGCTCTGCCTTGGT 18566 28 100.0 33 ............................ GGGCATCCTCCATAGGGCCTTGGTGGGTGAGCC 18627 28 100.0 33 ............................ CGAGACCGTTCGCGAGTACAAGGCCCAGGAGGA 18688 28 100.0 33 ............................ CCCGACGTGCGTGCCGTGGTTGCGGCACTTCGA 18749 28 100.0 33 ............................ CACCGGCCCCTCCTTCTCTGTGGCCCGCATGAA 18810 28 100.0 33 ............................ CGTCGGCGGAATCACCTGCACCAGGCCCTGGGC 18871 28 100.0 33 ............................ CTGGCGGAGGTGCCGGTAGTCGGCTCCGAACTG 18932 28 100.0 33 ............................ GGAAGCCGATGTGCCGTGGTGGCTCCGCGGGCA 18993 28 100.0 33 ............................ CCCGCGGAATCGTCGCGCTGTCCATCAGAACGG 19054 28 100.0 33 ............................ GTAGCCCCAAAGTAGCCCCGGCCGGGTTGGGGA 19115 28 100.0 33 ............................ GGGCACCAGCTTCGGCCTCAACGAAGCCGCCAC 19176 28 100.0 33 ............................ GGTCTCCACGAAACAGGAAAACGCTACCAAGGA 19237 28 100.0 33 ............................ CCCATTTGAGGAATGCGTGGATCATGTCGAATG 19298 28 100.0 33 ............................ CGGGGTTCTTGTCGGTCTCTGCTGAGGCGGACG 19359 28 100.0 33 ............................ CTCGGCGGCCTGCAGCAAGTCAATCAGGCTGAG 19420 28 100.0 33 ............................ GGAGAGTCGCATGACCCCGATGACCGACGCGGA 19481 28 100.0 33 ............................ GAGGGCCCGCACTATTAGTGCGGGCCCTCTCGA 19542 28 100.0 33 ............................ CCCACCCGTTGTTCTTCAGGGTCTCGATCAGCT 19603 28 100.0 33 ............................ CCGTGCAAGCTTTTGGGGGTGGGAGCAAATGGG 19664 28 100.0 33 ............................ GTGATGGCCGAGACCACCGGACACGCCTACACC 19725 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================== ================== 40 28 100.0 33 GCCCTCCCCGCGCATGCGGGGATGAGCC # Left flank : CACGGGAGAGGACGGCGTCGAACCGGGAAGGAACTATGCCTTCGAGGACGAGGACTCCGCGTCATGATGGTCCTCGTGCTCACCGCCTGCCCAGCAGGTCTTCGCGGCGACCTGACCAAGTGGCTCTTGGAGGTTAGCCCGGGGACATTCGTCGGCAATGTCTCCACCCGGGTCCGTGAGAAGCTCTGGGACCGAACGAAGGAGCTGTGCCGAGACGGGAGAGCACTGCTGGTATATACATCGGATGGCGAGCAGCGCATGCGCTTCGAGACTCACCGACACGACTGGGAACCCGTGGATATGGAGGGCCTGACGCTGGTCAGACGGCCCTTGCCGAGCAGCCGATCCGCCGAGAAGAATCCCCGGCGTACCGGTTGGAGCCAGGCATCCGCAGCCGCCCGCAGCCGACGCCCCTCCTGGAGACGATCGCGCTGATGCGGCACTCCGTTAAACTGAATCTGAACCGGCCGACTTCCTGACGTATCCCCAAGTCAGGAAGA # Right flank : CTCAGCTGCCACCGGCGGAAGAAATCCGCCAGCGCCCTCCCCGCGCATGCG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCCCTCCCCGCGCATGCGGGGATGAGCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [3,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCGCGTGCGGGGATGAGCC with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [48.3-23.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 918-37 **** Predicted by CRISPRDetect 2.4 *** >NZ_LDRJ01000205.1 Rothia kristinae strain SA15 contig_205, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 917 28 100.0 33 ............................ CTGGCAGAAGCTCTACGCCGATGCCCACGCAGG 856 28 100.0 33 ............................ GTTCTGAAGGGGAGCGATGGAGAAGGTGTGGGA 795 28 100.0 33 ............................ CAAGCTCCTCGCGGGAGGGGATTCCGCGAAGGA 734 28 100.0 33 ............................ GCCATCCGCGGACGCGTCCACCAGGGTCCGGTC 673 28 100.0 33 ............................ GACGAGCGCAACACCCCCTAAAACCTCCACAGA 612 28 100.0 33 ............................ GCGTCCCACCCGTCGTACCCGAGGGGTACCCAG 551 28 100.0 33 ............................ GAACACACCGAATTGTTCGAGGGGATCGAATTC 490 28 100.0 33 ............................ GGGTCCCGGCTTGCGAGGACCGCGCCTCTTCGA 429 28 100.0 33 ............................ GAAGCACGCAAAAGATGGAACGCTGTGGAGCGG 368 28 100.0 33 ............................ GAGCTGTGCCGCTGCGTCTGCCGCCTGAGGCCG 307 28 100.0 33 ............................ GGTGTAGTGCCCGGTGACGGCCGGCTCCGGGTC 246 28 100.0 33 ............................ CCTCCAGCTCCCCGAAACCCCCATCCCACAACA 185 28 100.0 32 ............................ CGCATGGGCCGCCCTCGGGCACCCTGACCAGA 125 28 100.0 33 ............................ TCAGCAGCCCGAAGAACAGCAGCCCCGCCCCGC 64 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 15 28 100.0 33 GCCCTCCCCGCGCATGCGGGGATGAGCC # Left flank : GCATGCGGGGATGAGCCGCGGGGGCGGTCGGGTCATCCGGGTCCCCCGG # Right flank : CGAACTCAGAGAGGTCGGCGGCGTCCGCCTCGGTGCC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCCCTCCCCGCGCATGCGGGGATGAGCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [3,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCGCGTGCGGGGATGAGCC with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [16.7-18.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.87 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 927-44 **** Predicted by CRISPRDetect 2.4 *** >NZ_LDRJ01000078.1 Rothia kristinae strain SA15 contig_78, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 926 28 100.0 33 ............................ GAAGACCACCGTGTACATGCCCCTCACGCTGCA 865 28 100.0 33 ............................ CATGAGGGCGTCCTGTACAAAAGTCATGAAAAC 804 28 100.0 33 ............................ CACGCGCCGCGACCTGCGGGCCGTGTTCGGCTA 743 28 100.0 33 ............................ GCAGGCGCTGGCGCGTGTCGGGTTGCCGACCTC 682 28 100.0 33 ............................ CACCACGTGAGCGACGGCCAGAGAACCCCCTCG 621 28 100.0 33 ............................ CTGTTCCATGGACTCCCCCAGCTCGATGCGCAG 560 28 100.0 33 ............................ CCCGGCGGCGGGGGTGTCGTCGGGGAGGGTGAA 499 28 100.0 34 ............................ GCTGCCCCAGCGCAAGCTGTTCCGCCGCCGCTTC 437 28 100.0 33 ............................ GACCGTCCGCTCCGCAACTTGACGGACCCTGCC 376 28 100.0 33 ............................ GCGCAGATGCGGCTGCACTTCCCAGGACCACTC 315 28 100.0 33 ............................ GCCCTTCGTGGACGCCGCGAGGGTCAGGTACGC 254 28 100.0 33 ............................ GCAACGAGCGTCGGCGGGAAGGTCGGGGAGGAA 193 28 100.0 33 ............................ CGCGGCTGGGGATGTGCGGCTGGGGAAGAACCT 132 28 100.0 33 ............................ CGAGCGGCGGCTGAAAACGTCGAGAATGTTCAC 71 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================== ================== 15 28 100.0 33 GCCCTCCCCGCGCATGCGGGGATGAGCC # Left flank : GCCGAACGGCGGGCTTCCGGCAAGCGTTCC # Right flank : CGATCACCCGTGCGCGCGCGAGCGGCGCACGGGTGATCGGCTCA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCCCTCCCCGCGCATGCGGGGATGAGCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [3,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCGCGTGCGGGGATGAGCC with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [18.3-13.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.87 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 98-1286 **** Predicted by CRISPRDetect 2.4 *** >NZ_LDRJ01000102.1 Rothia kristinae strain SA15 contig_102, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 98 28 96.4 33 ...A........................ GGTCCGCAGATCCGCGAGCGCATCCGTCCACGC T [100] 160 28 100.0 33 ............................ CCGACAGGCCGGCAAGAACGACATCCCCGTCGC 221 28 100.0 33 ............................ GAGTTGGGGCGCGGCGCACGGAGGGCGGTAATG 282 28 100.0 33 ............................ GAAGGCCCCGCCCCTCACGATGGAGGGGCGGGG 343 28 100.0 33 ............................ GCACATCGTGCAGGCGATCAACGCCCACCAGGG 404 28 100.0 33 ............................ GCGTGTGAAGGCCGCTTACCTGGCGCTGCGCGG 465 28 100.0 33 ............................ CTTCTCGGTGAGGCTGCCGAGCAGCCCCTCGAG 526 28 100.0 33 ............................ GCGCTGGCTCGACAAGCGCGGCCACGAGTACAC 587 28 100.0 33 ............................ GGTGCCGGTGAGCCCGCGGATGTCCAGGGCCTG 648 28 100.0 33 ............................ GACGGGCAGATCGTGTTCGCGGACACTGACGGC 709 28 100.0 33 ............................ GTGAGCGAGCACCTGGAGAAGACCGAACAGGAC 770 28 100.0 33 ............................ CCCAGAGGCGTTGCGTTCGAACCGCCCCATGAA 831 28 100.0 33 ............................ CAGGAGACGCGCCGGGGCCGCCGGGCGACGCTC 892 28 100.0 33 ............................ GTTGTACGTCCCGACCTTGGGGGTCTTGTTCAC 953 28 100.0 33 ............................ CTTGGCCTTGAACTTCTCGGTGAGGCTGCCGAG 1014 28 100.0 33 ............................ GCTGATCACCCTCGAGACCACCATCGCCGAGCA 1075 28 100.0 33 ............................ GAAGGATGTCCCCTCGAATCAGCTCAGCATGGT 1136 28 100.0 33 ............................ GTACATGCGCCCGGTCTGAGAGGCCCGCGCTTG 1197 28 100.0 34 ............................ CTACGGGTGCGGGATGCTCACGCTCCACGAGGAC 1259 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================== ================== 20 28 99.8 33 GCCCTCCCCGCGCATGCGGGGATGAGCC # Left flank : TATATTTGTGTCTCGAGTGTGCGCAGAACCCAGTGACGCACACAGATGACGTCATCGGCACGGTCAGAGGTGTATAAGAGACGGGGTCTGCGGACCGG # Right flank : GGTGTTGTAGCGGCTTGCAAGCAAGCTGGCAAGGCCCTCCCCGCGCATGCG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCCCTCCCCGCGCATGCGGGGATGAGCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [3,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCGCGTGCGGGGATGAGCC with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [40.0-28.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0.41 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //