Array 1 1379460-1375600 **** Predicted by CRISPRDetect 2.4 *** >NZ_FFFK01000001.1 Listeria monocytogenes strain 2842STDY5753932, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 1379459 29 100.0 36 ............................. GTTGAATAACCGGAAGCAAGTGGTACGTTTGTCCAT 1379394 29 100.0 35 ............................. TTATCCGAATGTAATTCTTTAATGTTCAAACGATC 1379330 29 100.0 35 ............................. ATCGTTGGGAACCTTATTCACGGGATGATTTTAAC 1379266 29 100.0 35 ............................. TTGAAATACGATCACGACATAATACTTTCGTCATT 1379202 29 100.0 37 ............................. TAAAATATTGGCGAAAACAGGTGACAGCAATAACCGC 1379136 29 100.0 36 ............................. TAGTTATAAAACCAGTAGACTTCTACGGTAGCATTC 1379071 29 100.0 36 ............................. TCCGCCAAGCAAACTATACAAGACTCATTTATCGAC 1379006 29 100.0 37 ............................. AAACTAACTTAGTTTCAGAAACATCCCGCGAAAACTC 1378940 29 100.0 35 ............................. AAAGCAGTCAAGAAGGCAGTAACGGGTAATGGTAA 1378876 29 100.0 36 ............................. CATGTTACCCCACGTAAACCCTTGCAACCATGCCAT 1378811 29 100.0 34 ............................. TTCCCCAAACATTTTATCATTATGACCTTATAGG 1378748 29 100.0 34 ............................. ATGAAAAAAGGTTCGCTAGATATTTCTATGCTAT 1378685 29 100.0 36 ............................. GTCTACAACATCACGTAATAGAAATTGAGTCTTAAC 1378620 29 100.0 38 ............................. CCAGTTAAAGAAGAACCACAACCAGAGCAAGAAAAAGA 1378553 29 100.0 35 ............................. CCGAAAAAGTCGGCAAAGTAAGATTGTTTTTTAAA 1378489 29 100.0 37 ............................. TTGGAAGGTTGCTTTGGTGGTATTTGAAGAGTTTGAC 1378423 29 100.0 34 ............................. TTCAAATTATATGTTACTTTTTACAAGAAATTCC 1378360 29 100.0 38 ............................. GTGAACTCTGTCCCGCCGAAGGGAGCCGTCCAATCGTC 1378293 29 100.0 35 ............................. CTAAAAAGGATTGGCAGAATGGAAATGTGTACGTA 1378229 29 100.0 36 ............................. ACCATTACCACCAAAGTCCCTACACTCAATACTACC 1378164 29 100.0 36 ............................. GAGAACGCCATACCAGTTGAACTAGATCATGTAGTA 1378099 29 100.0 37 ............................. TTGAGACCATCTTGCGAAAAATGGATGCGGCAGGGTA 1378033 29 100.0 35 ............................. TACTCCGTTAATGTTTTAGATGCTTTTTTAACAGC 1377969 29 100.0 36 ............................. ATTTTTTTATTCCAGCTTTTGCGTATCCGGCTTTTT 1377904 29 100.0 35 ............................. TTGTTTAGCTCCGTCAATTGAAAGTCTCGCAATAG 1377840 29 100.0 37 ............................. TTCTCGTAACTCTTGACGATTGCATTTTTTTACTCTC 1377774 29 100.0 37 ............................. TTTTGTCGCATAAATTCTTTGATGTGGCGGACTGACG 1377708 29 100.0 35 ............................. AACAGTATCATCACGTTGTTATTGCTGTCACCTGT 1377644 29 100.0 36 ............................. TAACCAAGCATTGCCAAAAACTCGTCTGTTGATAAT 1377579 29 100.0 36 ............................. TTCTATTGCAGAACAGAATGAATTGTATGCACAAGG 1377514 29 100.0 37 ............................. TCGTTAATCATAATTGATGAAAGTCATCATGTGTTAG 1377448 29 100.0 36 ............................. ACGGGTACCAGCTTTGATTTGCCGTTTTCAATTATT 1377383 29 100.0 35 ............................. TTTATCACTCCTATACTTTTCTTATTTCTGTAAAT 1377319 29 100.0 35 ............................. GCTTTTTTCAACAATTTTATCACCAGATGTCATTA 1377255 29 100.0 36 ............................. ATAGATTAGTAGGGAAATAATATGTAATGGTTACTG 1377190 29 100.0 37 ............................. AAGAAATCCGGGAAGTTTTGTTCTACAGAGCGAACGG 1377124 29 100.0 36 ............................. CTTCTTAACCCTTTAACACAAGCGCAAGATGGCTGT 1377059 29 100.0 36 ............................. TTAATAAATCCGATGGTGATGCCTATGTTATACGTC 1376994 29 100.0 35 ............................. TAAAACATCGCTTCGTTATACAATGTCTTTTTATA 1376930 29 100.0 36 ............................. GTCAATAACTAGACGAGCTAACGTTTGTCGCTGTTT 1376865 29 100.0 36 ............................. GTGTAATTCTTAATTCCGTATTGATTCGCTAGTTTT 1376800 29 100.0 37 ............................. TAATACAAAATATTCATAACTCCTACATCATTATATA 1376734 29 100.0 36 ............................. TTGCAAACCTAACTTATCTTTGTTTTTTTGCTTTTC 1376669 29 100.0 37 ............................. TTGGATTTTATTAAATACAGAGTCACGGATTGTATTT 1376603 29 100.0 37 ............................. ATGAATGTATTAGCTACATGGACAACTATGCAACAGT 1376537 29 100.0 35 ............................. TACGATAATACGAGTTTTTCAATAGGCAGACCTCC 1376473 29 100.0 36 ............................. CCGGACAAATCCACTTTCATGGCTAGAGCCGCTTTC 1376408 29 100.0 36 ............................. GGTGAATTCGTCACAAGTATTAAGTCAATTACAGCG 1376343 29 100.0 37 ............................. GTTATTAAAGGCTATATAGACAAGGTCTTAAGCGAAC 1376277 29 100.0 36 ............................. AGAAATATGGGAAGCTGGACCAGAAAACTTGGCAAG 1376212 29 100.0 35 ............................. TTTATTGTCGATAAGCTCATGACAGATGAATCACT 1376148 29 100.0 36 ............................. AAAGGTAAAAATATTCTTGCTGTGGCAGGTCCTGAT 1376083 29 100.0 38 ............................. CTCTTCCACTTTTGCTGCTTTTTCCGCATCTGGTACAA 1376016 29 100.0 33 ............................. TAAGGTCATATAAGAAAAAATGTATTTTTTCCC 1375954 29 96.6 34 .......................C..... CAAGATATGCTAGAAATGGCGCAAATAGCGCGCG 1375891 29 100.0 36 ............................. ACGTTTGCGGTAGTTTTACCGGGCACGGTCAAATAT 1375826 29 100.0 37 ............................. AAGCTACCCCTGCAAGACATGAAATAATCGCAATGCC 1375760 29 100.0 36 ............................. GGCTTTCTGGAATTGTTTCGCTGACATCCCTGCCAG 1375695 29 100.0 37 ............................. AAAAACTATGCAATTAGCAAAGTGATTTTATGTAATT 1375629 29 93.1 0 .......................C....C | A [1375604] ========== ====== ====== ====== ============================= ====================================== ================== 60 29 99.8 36 GTTTTAACTACTTATTATGAAATGTAAAT # Left flank : CATTTAAAATTTGGTGGTGAAGATATGTATGTAATTTTAATTTATGATATTTCAATCGAAAATGGTGGAGCAAAAGTCTGGAGAAATGTATTTAAGATTTGTAAAAAGTACTTAACTCATGTTCAAAAATCAGTTTTTGAAGGTGAAATAACTCCAGCGCTTTTAGTTAAGTTAAGGATGGAGTTAGATAAGTATATTCGAGATGATCAAGATTCAGTAATTGTTTTTTCTAGTAGACAACAAAGATGGCTAGAAAAAGAATTTTGGGGATTAACGGATGAAAAGACTTCTAATTTCTTTTGATGTTCTCGGTCTGTCGACCTTTAGTAGTGCGAAAAATAGTGGGGTTCGACAGATTTAGGGAAATCATTGGGGGAGAAAGAGTTTGAAGTTTTTAAGCGGAAATCTGAAGGGATAAGTTATGATTTTTACGTAATTTTTAAGAGGTCGACAAAAATAGTGACCTGAGTTATGATGGGAGTAGGCGTAAAATAGAGCGG # Right flank : GTCTTCTTAAAATTTAAACCCCAAAAATAAAAAAGGCCAGGACCTAAATCCAAGCCTTTTCCTACACTCCTCTAAACCAACAAAACCGCAACCAACGCCAAAACCGCCGGCAAGCCCTGCTTCACTAAAATCCCCTTAGAAGAAGTCGCCCCTCCAAACAGCGCCGCCACAACCACACAGCTCAAAAAGAAAATCTGCACAGTTTCAGCAAACCCTGCTCCCGCGAAAAACAATCCCCACACAAGTCCTGCCGCAAGAAAGCCATTATAAAGCCCTTGATTCGCAAATAGCGTCTGTACTTTCTTATTCGCAAGTAGTTCCTTCTCCACACCAAATGTCTTGGCTGCGAGTTTGGTATTGGCGAAAAACATTTCTAAAATCATTATATAAATATGCTCGATCATTACGATGAAGGTTAAAATAAATGCTAAAATGGCCATAAAAAATCCCTCTTTTCTACTTCGAAGTATAGCATAGCTTGTAAATTTTTCGTAAAAATA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAACTACTTATTATGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:82.76%AT] # Reference repeat match prediction: R [matched GTTTTAACTACTTATTATGAAATGTAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.91 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], //