Array 1 43283-43982 **** Predicted by CRISPRDetect 2.4 *** >NZ_NMMX01000032.1 Escherichia coli strain MOD1-EC7014 MOD1-EC7014_32_length_44120_cov_40.3082, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 43283 29 100.0 32 ............................. GTAACCTCTGGGTGTCCATAATTCGCGTATAA 43344 29 100.0 32 ............................. CAGTTATAACCCCGCGCCGTGCTGCTGAAACA 43405 29 100.0 32 ............................. TACCGAAATTCGAGGTCAAATACCCCGAATTA 43466 29 100.0 32 ............................. CGCCCCTGCGGATCGACACCCTGTTTATCAAA 43527 29 100.0 32 ............................. TCGCCATATTTGCTGTCCTCTCGACTGTCCAG 43588 29 100.0 32 ............................. TTGCCCGGCGCACAGGTGCACATCCCGGAAAA 43649 29 100.0 32 ............................. CCTCAACTGGCGTTTGAGTTGTAGATGTCTGA 43710 29 100.0 32 ............................. ATTCAGAAAATTTAAAAATGTGGGCGCGTGGC 43771 29 100.0 32 ............................. TAAGGCCGTCGCCGGATCAGCCTGGCTATGCC 43832 29 93.1 32 .A.C......................... TTCTTGCGGGTGTTGCAAATATTCTTCACGTA 43893 29 93.1 32 .A.C......................... GACGCCGCCGCCGCGAAGCCGTTTCCGATGTT 43954 29 93.1 0 .A..........................A | ========== ====== ====== ====== ============================= ================================ ================== 12 29 98.3 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGAATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTGTAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : CCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAAATTAAAT # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-14.90,-14.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 25482-26668 **** Predicted by CRISPRDetect 2.4 *** >NZ_NMMX01000036.1 Escherichia coli strain MOD1-EC7014 MOD1-EC7014_36_length_36818_cov_38.0244, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 25482 29 100.0 32 ............................. CCACCTCAGCCTGCGCACCCGCTGAATATTCC 25543 29 100.0 32 ............................. ATTACATCCGGCAATATCATGCTGATGCCTCG 25604 29 100.0 32 ............................. GGCGGGCCGTTGGCTAAACGCTGCGATCTGCC 25665 29 100.0 32 ............................. GGACGCCCAGGAAAAGGACATTGCAGCGTCAT 25726 29 100.0 32 ............................. AAGGTCGTAAACATTGAAGACGCGATCGCGCG 25787 29 100.0 32 ............................. TAACAGGAATGTTTACGCTGGCTGAGGCTGAG 25848 29 100.0 32 ............................. CCGCCGTCGAGTGTAATACCCTGATCCATCGC 25909 29 100.0 32 ............................. CAGGATTGAAATACAGCCTCGGCCTGGGACAG 25970 29 100.0 32 ............................. AGGCGAGGGAGATCAGAGATCAGGCTATTACA 26031 29 100.0 32 ............................. AGATCGGCGGCCAGTGGATAACCGTTATCCCC 26092 29 100.0 32 ............................. GTGTGGTAATTGGTGGTCTGGCTGGTGGTTTA 26153 29 100.0 32 ............................. AGAATCTGGACACTGCATATACCGCAATCCGT 26214 29 100.0 32 ............................. CCAGCCGTTCAGTATTGCCGGTGTCAGCAAAA 26275 29 100.0 32 ............................. GAAAAGCTACTTTTGTGTTCAACTGATGCATT 26336 29 100.0 31 ............................. CCGCGCAAATCCAGCGAGCCGCCGACGCTCA 26396 29 100.0 32 ............................. TTGCAAACCGTGGCAAACGCAATTAACAAAAA 26457 29 100.0 32 ............................. ATTGTTATAATTATTTATTGAAATATCATTCC 26518 29 100.0 32 ............................. AATCTATTGTGAATTTGAAATGGTCCAGCACT 26579 29 100.0 32 ............................. GGTAAAAACACGGTCTGAACCGACATTCATGT 26640 29 93.1 0 ...........AT................ | ========== ====== ====== ====== ============================= ================================ ================== 20 29 99.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTCCTTGCCGCAGGTGAAATTGAACCGCCACAACCTGCGCCGGATATGTTACCGCCAGCCATCCCCGAACCTGAAACGTTGGGCGATAGCGGTCATCGAGGACGCGGCTGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCGCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAGCAAATTACCCAACTGGCTGGTTGCGGAAATGTGGTGATGGCCTGGGCGACCAATACCGAGTCGGGTTTTGAATTTCAGACCTGGGGAGAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTATCCGTTCTTTAAAAATAAGGAAATGTTTTAATTTAGTTGGTAGATTGTTGATGCGGAATAAATTTGTTTAAAAACAGTTATGTATGCTTAGT # Right flank : GGGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAACGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //