Array 1 5510-7792 **** Predicted by CRISPRDetect 2.4 *** >NZ_CZVN01000070.1 Candidatus Kryptonium thompsoni strain JGI-13, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 5510 30 100.0 36 .............................. TAAATAATCAACTTCCCCACCAAAGACACAAAGAAC 5576 30 100.0 36 .............................. GCTCTCTCAAAATCTTGTTTAAATCTTCTCGTTCTT 5642 30 100.0 36 .............................. AATATGGTTATGTTACGGGTCCAACTTTATTTATTG 5708 30 100.0 37 .............................. ATATTCCCGGTTTGCCCACTTTAACCTCTCAAGGTCC 5775 30 100.0 37 .............................. TTCTTTTAAATAATGCCTCATTTCCCCCAAATTGCGA 5842 30 100.0 36 .............................. TATAATACCCCCACCACCACTCTCCATCAAACTTCC 5908 30 100.0 37 .............................. TCAAGTCCTTCAGATTCAAGATATAATGTGGAATTGT 5975 30 100.0 35 .............................. ATGTTTTTAAAAATCCTTCCGCTTTCGCTTTAAAT 6040 30 100.0 36 .............................. GTATGAATTTTTTCGGTAAGAATTTTCTCAGTAGAA 6106 30 100.0 36 .............................. CTTTTCATTTTGCATTTTCATTCTCCTTTTGATTTA 6172 30 100.0 36 .............................. AGTGGGGTCAATCAAAAGCCAAACATCTTCCTCATT 6238 30 100.0 36 .............................. CCATTTCAACCATCAGCATAATTCTTTCTGCAATCT 6304 30 100.0 36 .............................. TGGAAATAGGTTTTCTGAAACCCCTATTCCGAATAT 6370 30 100.0 36 .............................. TTTTTTTGATTTTTTTAAAAAATCGCAAAAACAACG 6436 30 100.0 36 .............................. ATGCTTTGGAATAAAAAATGCCCACTATCTTTACCG 6502 30 100.0 36 .............................. CAAATTTGGGTTTTAATCGCTCTTTCAAAAATTCTT 6568 30 100.0 36 .............................. AAGTTTTCAATTACAATTTTTCGGTTGCTCTCAAGT 6634 30 100.0 36 .............................. AAACAATTATCGCAAGTATAAGTTTTCTATATCCTT 6700 30 100.0 36 .............................. TTTTTGATTTTGCATTTTCATTCTCTTTTTTGATTT 6766 30 100.0 36 .............................. TCCTTATCACTTATGTAAGCAAGATAATCACATTTA 6832 30 100.0 36 .............................. ATATAGGCTTTGGGATAAGTTGTTTTTAAATAATTT 6898 30 100.0 37 .............................. CGTTTTTCTTTCCTTATCCAATCCGCTTCATTTTTGA 6965 30 100.0 36 .............................. ATTGTCCAATTTGCAGTAAGAGAGAAAAATTCCATA 7031 30 100.0 36 .............................. AAGTTTCAGCGTCGAAATACCCTGCAAGCGCGATTC 7097 30 100.0 36 .............................. ACCCTCTGGACAAGCGACATTCTGCAGGCATTTTGC 7163 30 100.0 36 .............................. ATTATTTTGTAGAGTATAGGTCTATTAGTTTTTCCT 7229 30 100.0 36 .............................. TTCTTCTTTTGTCTTAGTATAACTGGTTGGATCAGT 7295 30 100.0 36 .............................. AAGGTAGATATAAGCAAGATGTATTTTTTAGTTGCT 7361 30 100.0 37 .............................. ACTTATCAAATAAATAATAATTCTCACCATCAAAATA 7428 30 100.0 37 .............................. TTATAAAATAAAATTGAATTTTCCCCTGTTTGAATAA 7495 30 100.0 37 .............................. GAAATAAAAAAGATTCCCTTCGTATTCATACACTTTG 7562 30 100.0 37 .............................. TCTCATTTCGCAGGATCACATACAAAGGGTCAAAAAT 7629 30 100.0 36 .............................. GTTCATGAATATCGCGATCGTATCGATTGCGCTTTC 7695 30 100.0 36 .............................. TAGTTCAGAAACGCCATTTCCTCAACCAGCGTGTCA 7761 30 96.7 0 .............................T | TT [7784] ========== ====== ====== ====== ============================== ===================================== ================== 35 30 99.9 36 GTGAGCATCGAACCAGTGTGGAATTTAAAC # Left flank : ACATATAATGGGAGAGGAAAAATATGAAGGATTTAAAATTTGGTGGTAGGGGGGCTAGAAATGTATTACATAGTTGTTTATGACATAGCGGAAAAGAGGGTGAACAAAGTTTTAAAATTTATGCGAAAGTATTTGAATTGGGTGCAAAATTCGGTATTTGAAGGAGAATTAAGCGATGGACAATTTGAGGAAATGAAAGTAAAATTGAGAAAAATAATAAACTTGAATGAGGATTCGGTTTTAATTTATTCAATGGAGAAAAAATGGGTTGATAGGGAAGTTATAGGTGTGGAAAGAAGTGAGGTAAGTAGAATAATTTAGTCGCGGACAGAGTTTTGGGGCGTTAAATTTAGCGGTTAAATACTTAATATTTGAAAGTTTGAAAAAAATTAATCAGTTTTCTCTTAGTCGCGGACCGTATATTTTTGCATTTTGCTCCGCGACTTAATTTAGGTTGGAAAAATTTGATTTTTTGTGTAAAATTTTGTAGTTTTTGGAGA # Right flank : TCACTTTATCAGAAGGGAAGTATTTTTATGATCAAGACCAAGCGTGTTTATGAGGCCCCTGAACCTGATGACGGTAAGCGTTTCCTGGTGGAGAGATTATGGCCCAGGGGTGTGAAGAAAGAAACTTTGCAAATTGACGCATGGTTGAAAGGAGTAGCTCCAAGCCACAGCTTGCGACTTTGGTATGGGCATGACCCAAAGAAATGGGAAGAATTTAAACGACGCTACTTTGCTGAGTTAGATGGCAAACCCGAGGCATGGCAACCCATCTTAACAGAGGCCCGCAAAGGAAATGTAACCCTTCTGTATAGTGCACGCGATACGGAACATAATAGTGCGGTAGCATTAAAGATTTACTTGGAGAATAAAAAATGATGGGATAACTTCGAAAAAGTTTTCAGAAACCTGCTATTGACTCTAAGCCCAATTTTCGTTAAATTTAAGATAAACATAGCGGAAAATAGTTAAGAAATTTAAACTAAAATTGAGGTTCCACTATG # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGAGCATCGAACCAGTGTGGAATTTAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.60,-0.20] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [75.0-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.68,0 Confidence: HIGH] # Array family : NA // Array 1 188-1415 **** Predicted by CRISPRDetect 2.4 *** >NZ_CZVN01000082.1 Candidatus Kryptonium thompsoni strain JGI-13, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 188 30 100.0 38 .............................. ATGATAACTTCTCTGAAGCACCGTGTTTAAATCTTCTT 256 30 100.0 35 .............................. AAACTGGGACCTGCATAATGTTCGCATTTATTTAT 321 30 100.0 37 .............................. TAAATTTTTGGATACCCCCCCTCCATTTGAGAGAGTA 388 30 100.0 37 .............................. ACTATGTTCTTTTGAAACTCAAAATCTAAAAGAGAAA 455 30 100.0 36 .............................. TAAATAATTTTGATGAGATGTTCAGGGAGCAATTTA 521 30 100.0 36 .............................. GAAACTAATTGTTCGCGCTTAATGGGGTCTACTTCC 587 30 100.0 37 .............................. ATATCTCCTCTGCCCACCAACTTGATTAAAACACGGG 654 30 100.0 36 .............................. ATTGTTTGTGTTAAAGTTTTATCAATCCTTTCTTTT 720 30 100.0 35 .............................. TTCCAGACAACCGCACCTTTTCATCAAGGCGTTTA 785 30 100.0 36 .............................. GTTTATAGGGATTATCAAAAACCCTCGCTGGGATAT 851 30 100.0 38 .............................. TTAAAACCCTTTTATGTCTTCGCAAGAAATAATAAACT 919 30 100.0 37 .............................. ATAAAAAAGATTATTGACCCGTTTTTAAATTCAACAT 986 30 100.0 38 .............................. TTGAGGGCTACATCATAGCCCTGCGACCCAATAATAGT 1054 30 100.0 34 .............................. CAAGAAATAATAAACTTATTTGTACAACTTACGT 1118 30 100.0 37 .............................. ACGATTATAAGCCAAAAGTGCTAAATCGGGATTTTGA 1185 30 100.0 37 .............................. AAGTATTTGTCGCAGGGTCATACGCCTCATTCGTGGA 1252 30 100.0 37 .............................. ATAAATTATTTTATCCCAATATCTTCTTTCAATTTCA 1319 30 100.0 37 .............................. TTTACGCCGAATGACCTCAAAATTCTCTGAAGTTCTT 1386 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ====================================== ================== 19 30 100.0 37 GTTTGAATCGAACCTGTGAGGGATTGAAAC # Left flank : ATTTTTGAATAATTTATTGATTTACAATCAAAAAGTCGCACTCTGACATAAACTAAGACATTTTGTCAGGGAGGTTGGCGGAAAAATTTGGGGTATGGGTTAACATTTAGGCTCTTGACTTTTGGTGGAAAATTTATTATATTATAGTGTCTGAATTTTGATAGGTTTAAGTTTTATTTTATGGTGGG # Right flank : CACGGGCATTGATTCAAATGGGGAAAGATTGGGGTTAGCAATTTTGATGCGCAAATCGTGTTTGGCAATTTTACAGGTTGTTATTCAAATAATATCAATGATCCTGTTAGCTCATTTTTTAAAAGCATTGAGGATGTAGTAATGAAATATGAAGAGAATTGGATTGAAGAGGATGCGTTTATAAGGTTCTACTATTTCGTCAATCCGGGACAAAGTCCATATGTTGAAATTTTTGATGTCCCTTCGCCCGTTTTCAGATTTATCGCTTATGTTAAGCAGGCGGATGCTTATGCAGAATGGAAAGAAATGGTGGGTAGAGCCTATGATGGGCGCAAAAACAAAGTTTATTTAAGACTGTTAAGCGGGGAAAGCATAGTTAGATACTTCTTTAGGAATAAGGGCGAAAGAAGGGTTTTCGGGAATTGGAATCTTTTAAAATTCTATTTAAAGGAGGTGAAAGGGATGAACGAGGAAAGAATCAACGCAATAAGGGAATTTTC # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGAATCGAACCTGTGAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.80,-0.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [78.3-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0 Confidence: HIGH] # Array family : NA // Array 1 52-2750 **** Predicted by CRISPRDetect 2.4 *** >NZ_CZVN01000096.1 Candidatus Kryptonium thompsoni strain JGI-13, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 52 30 100.0 37 .............................. CCATTAAAGATATAATAATGTGCGTTGGGGCTTCCAT 119 30 100.0 35 .............................. GAAGAAGATTTAGAAAAGGTTGTGACCGTTAGGAC 184 30 100.0 37 .............................. CAAGGTCCATTTTAACCCCCATTACTTTTTTTGTTTT 251 30 100.0 38 .............................. TTAATATTAATAATTTCAACCAAAACATGCGCGTAATT 319 30 100.0 36 .............................. TCGTTAAAAGGGAGTTTATATCCGTCAACACGCCAC 385 30 100.0 35 .............................. TCCCTATTCGAATAACTCGTCCGGGGCGCGCAAAA 450 30 100.0 37 .............................. AAAAACAGGAGTGTGATTTATATCACACTGTTTTTAA 517 30 100.0 37 .............................. TTCTTTTAATTGCCTCGGTAATGCTTATTGTTTTAAT 584 30 100.0 37 .............................. ATTTTAAGTTCGCACACTCACGATTCAATTTATTATC 651 30 100.0 37 .............................. TTATGCATAACACGTTCTCCACAATCACAGTGACCCA 718 30 100.0 37 .............................. TTAAAAGGTGGTTTATATCCGTCAATATACCACCTGT 785 30 100.0 35 .............................. ATTCTCTCCCCAAACAAATTGTGGGGGTTTACAAC 850 30 100.0 37 .............................. ATAAATTTTATCAATTCCAACCCATTTATCCCGTTCA 917 30 100.0 37 .............................. AGAGATGAATTAAATTTTATGGTTATTTCCGTTATTT 984 30 100.0 38 .............................. GCAATTAATGATAGATATGTTTCATTTAGCTGGACTTG 1052 30 100.0 36 .............................. ACAACTATATAACTTGAACAAACAAGTTTATTATTT 1118 30 100.0 37 .............................. ATAAGAGCATACCATATATTCTTATCGCTCAAATTCA 1185 30 100.0 38 .............................. GGTGAAATACCGCCTGAAGCTTCACGACAACAGGCTCG 1253 30 100.0 36 .............................. TAAAATTCTCTTCGCTTCATTTTCGCTTATTTCTAC 1319 30 100.0 38 .............................. ATTTTTCCCCGGTTGCTATGAACCGGGTTGATTTTTTA 1387 30 96.7 38 ........T..................... TTGTTTTAACCACCGTTTTATTTTAAACAAATCCTTAT 1455 30 100.0 35 .............................. TGGGACAACAGGATCGGCGTCAAGCTGACGAATTC 1520 30 100.0 37 .............................. GTTGGTTTGCGATTCTGACGGAAGCGAAATCGATAGT 1587 30 100.0 37 .............................. GTTGGTTTGCGATTCTGACGGAAGCGAAATCGATAGT 1654 30 100.0 37 .............................. GTTGGTTTGCGATTCTGACGGAAGCGAAATCGATAGT 1721 30 100.0 37 .............................. ACTACAGCCTTGTGCCGGGAGACATTGTCGAAATCGA 1788 30 100.0 34 .............................. TAGATTTTCTTATATTTTACTGCTCCACCAATTA 1852 30 100.0 38 .............................. TAAATTCGCAATTATATGCAACACCATTGGAAATAAAT 1920 30 100.0 37 .............................. CAAATAAATAATCATTCTTCTTCACAACATTGTTAAA 1987 30 100.0 35 .............................. ACCCTCAAGAGCCAGTTCTTTTGTCATTTTAACCA 2052 30 100.0 36 .............................. TATATCTTGCCAAAGCGGTATCTATATTACTTTCAT 2118 30 100.0 37 .............................. AATATTCTACACTGCCACATTTTTCACACCTAACTTC 2185 30 100.0 35 .............................. TTCGTAGCTAACTCTTATCTTGATTCTGTTATTCA 2250 30 100.0 37 .............................. ACACATTATTCCGCCGACGCCGAACGCAAATGTTTGG 2317 30 100.0 37 .............................. CCCTTGATAGGGAAAAATTGGACTGCGTCATTTAATC 2384 30 100.0 38 .............................. ATTTTTCCCCGGTTGCTATGAACCGGGTTGATTTTTTA 2452 30 96.7 38 ........T..................... TTGTTTTAACCACCGTTTTATTTTAAACAAATCCTTAT 2520 30 100.0 36 .............................. GTTTTTAGAAAGGTTTTGGGTTAGCATTATTATGTC 2586 30 100.0 37 .............................. ATTAAGTATTTCAATTGCTTCAGTCTTACATTAACAA 2653 30 100.0 37 .............................. CTATGATATACAAAAACAACAACTTTACTCTCATTTT 2720 30 86.7 0 ........T..................TTA | A [2745] ========== ====== ====== ====== ============================== ====================================== ================== 41 30 99.5 37 GTTTGAATCGAACCTGTGAGGGATTGAAAC # Left flank : GGTTCGATTCAAACTGAATTTGAGCGATAAGAATATATGGTATGCTCTTATG # Right flank : AGGGTAATTTGTGAATTGAATTGGTGAGGGGGGGTTAAAGCATATAGTTTGTGGAAAGCTTTTAATGTTATGGTGAGTAAAAGGGTAAAAAGGTCAGAAAAATTTTTGATAATGTGCATGTAAAGTCAGTTTAAGAAATTTTGTAAGCCGGGTAATTTCAGAGAGTGTAGCTCTTGACTTTTATTTAATTTATTGATATAATTAGCACAGAGAGGAGCCTCCAAAATACTAAGGTGGATTTAAAATGGAATTAAAGTTAAAGTGCAAAACCATAACACCAATGTTTATGGCGGGGGCTGATGGTAAAACTCCTGAGTTAAGGTCTTCAGAGTTTAAGGGGATGATGAGGTGGTGGTGGAGGGCAATAAAGGCGGATGATGATATTGGAAAGTTGAGAAAAGAGGAAGCGGAAATTTTTGGAGGGACTGGGGAAGGAGAGGGCAAAAGCAAGGTGAGGGTGATAGTAAAGCCAGGCTCAATTGACATAGGCAATGATGTTC # Questionable array : NO Score: 9.23 # Score Detail : 1:0, 2:3, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGAATCGAACCTGTGAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.80,-0.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : NA //