Array 1 207521-205539 **** Predicted by CRISPRDetect 2.4 *** >NZ_CAIZAO010000003.1 Salmonella enterica isolate 1503_08, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 207520 29 100.0 32 ............................. AGTTCCGGCGCCACGCATAACCCTGCAATCCT 207459 29 100.0 32 ............................. GCAAATATTAACCCGGCTCGATTTAGAACCTG 207398 29 100.0 32 ............................. ATTTTCATCGCCAGTGCGGGGTCCTGTGGGTT 207337 29 100.0 32 ............................. GGCTGAGTCGGCCAGGCCGTGGTAAAACGATC 207276 29 100.0 32 ............................. GCGGAAAACGCTACGCTGAAACAGCAAAACGA 207215 29 100.0 32 ............................. CCCGAGGGGATATTTATTCGGCAGGGGAAGAC 207154 29 100.0 32 ............................. AGATTTTAACTCAGGTTCTTATTAGTAGTTTT 207093 29 100.0 32 ............................. GCGGCTTGTCGGGTGCCCGCCCTGCCGCCCTG 207032 29 100.0 32 ............................. GGCATCGTTATACGCGTGACGGTTTTAATAGT 206971 29 100.0 32 ............................. CGTTTGAGCTGCTTCCACGCCTTGCCATCCAT 206910 29 100.0 32 ............................. GCCGACGCCATCCGGATAGCGCTGTCAGCTGC 206849 29 100.0 32 ............................. AGGGGGCGCAGGTTCGCCAGATTTATAAAAAA 206788 29 100.0 32 ............................. CATGGGTTGTCCTGTTTCATGCTGTTGCATTC 206727 29 100.0 32 ............................. TTGCACTCACCTCTCTCGCCACAAAACCACCT 206666 29 100.0 32 ............................. CCCTGGCGGGCAATCCCTGCCTGGTCATGGCC 206605 29 100.0 32 ............................. CTGATGGAACGTTACGGGCTGACTTGGTGCGA 206544 29 100.0 32 ............................. GCGAGCGCCACCGACGTTGCCGCCGCCCGTAT 206483 29 100.0 32 ............................. ACGCCCATAACGGCGAACTCATCCATCAGCAT 206422 29 100.0 32 ............................. CCGGGGAGTGATGCCCGTCAGTTCGGCACTGT 206361 29 100.0 32 ............................. GGACTGTAGATCTTGGGGGGAAATCAACTTAC 206300 29 100.0 32 ............................. AGTTACGGCCCATTAAACGGGGGGCAATTTAA 206239 29 100.0 32 ............................. TCCAGCCCGTTTTTTTAACCTGTTCTTTAACG 206178 29 100.0 32 ............................. CCAGTGAGCAGGTCGCGCTCAACCGCGCTGCC 206117 29 100.0 32 ............................. CGCATATAAAACATTTGAATCAATAGTGACTG 206056 29 100.0 32 ............................. GGGGAGCGGATCGTTGGTGATTTTCTCGGTAT 205995 29 96.6 32 ............................C CTTGGCAAAATAAATATAATGTAAATCCATGC 205934 29 100.0 32 ............................. GGTCTCAAATGAGAGAACGCGAAAATGACCAA 205873 29 100.0 32 ............................. CATATGCACGGCCATTTTGCGTATGGCTTCGC 205812 29 100.0 32 ............................. GCTAAATTAATGAAGGCAAGCCTGTGGGGCCG 205751 29 100.0 32 ............................. GCGAGCCTCAGAGAATACACTGGGAACAAAAC 205690 29 100.0 32 ............................. TTAACGTAACAGTGTATTTTTTGTCCCCGTTG 205629 29 100.0 32 ............................. CAAAAGGCCGACGGTGTGTACACCTCTAAAAA 205568 29 96.6 0 ............T................ | A [205541] ========== ====== ====== ====== ============================= ================================ ================== 33 29 99.8 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGATCCGCCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCCCTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTAGTCACGGAAAACGTACCGCCGCGTCTGCGGGGTCGCCTTGCCGTCTGGTTACTGGAGATTCGGGCCGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAGATGATTTGGCAACAAATCACGCAGCTTGGCGGTTGCGGGAATGCCGTCATGGCCTGGGCGACTAACACGGAATCGGGATTTGAGTTTCAGACATGGGGTGAAAACCGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTGGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCTGGCAGCGCCTTGTCAATATACTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 225343-224155 **** Predicted by CRISPRDetect 2.4 *** >NZ_CAIZAO010000003.1 Salmonella enterica isolate 1503_08, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 225342 29 100.0 32 ............................. TGGCTGAATGCCAAAGAAGAGGATATCTCAAA 225281 29 100.0 32 ............................. CGATTTCCGTTTCCATCTGCACGATTTCAGCA 225220 29 100.0 32 ............................. CCGGTATCGTTTCAGGATAGCCCACAAATACA 225159 29 100.0 32 ............................. TGCGCTAACCCGGCCTACCGCGCCGACTACGA 225098 29 96.6 32 ............................A TGCCATCGCCGAGGGAGGGCCTCCAGATCATC 225037 29 100.0 32 ............................. CACAAAACGGGCATCCGCCGGGAAGGTTCGGA 224976 29 100.0 32 ............................. CTGAATAATTCGCCGTAGGTAGCCAGCGCAAT 224915 29 100.0 32 ............................. GGCGGTGAGGCTAACAAAATTATGACCTATAT 224854 29 100.0 32 ............................. TGGTGCATGAATATCCGGTGACTCGTCGTCCG 224793 29 100.0 32 ............................. CCGTCGCTGACGAACTGACTTTTCTTCATCTC 224732 29 100.0 32 ............................. TTCACCTTTCCCCACAATGTCAGAGGTTATTT 224671 29 96.6 32 ............................A CATTGGGCACCGTACCGTTGCGAATACGTCGC 224610 29 100.0 32 ............................. AATATTTCTGGCGCCAGGTGCATTCCGTCGCA 224549 29 100.0 32 ............................. CCAGTAATCACAGACTTTCTCCGTGTCTTCAC 224488 29 100.0 32 ............................. GCCCGCCTGTCGCTGTACGCCGGGGGCGCATA 224427 29 100.0 32 ............................. GAGATCCCCCAGCGTGAATATCTGGGAGTGTC 224366 29 100.0 32 ............................. CGCAAATGAGCCAGGCGGACAGGCATTTTAAT 224305 29 100.0 33 ............................. CCTCGCTGACGGCCAGCAAGCTCACGCATTTGC 224243 29 96.6 32 ...........A................. GACGGCGCTAGTTCGTCATATCAATGTGAATT 224182 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================= ================== 20 29 98.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGCTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCGCGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGCGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTGGTGATGATAAAAAGTGCTTTATAAAGAACGATATACGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCTGGTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTTCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGACCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCATGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGGAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTACCGAATTGGACTATTCACGCTACCGAATGATGTACAC # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //