Array 1 1076-275 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAIVK010000004.1 Moraxella bovoculi strain KZ-1 NODE_4_length_147057_cov_56.565412, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =================================== ================== 1075 36 100.0 35 .................................... GATGCATACAGAATTGATAGTATACCTCATCCACT 1004 36 100.0 33 .................................... GTCATACGAACGAGGTTTTGCCAAGTATTGTAG 935 36 100.0 34 .................................... TCATCAAAGGTTAGTAATTCTTTGATTTCACTCT 865 36 100.0 34 .................................... ATACAGAATTGATAGTATATTTCGTCTACATGGG 795 36 100.0 33 .................................... CAGATTAATTCTATCTTGGAGTATTTCAGGTAA 726 36 100.0 34 .................................... CCTTTAACTTCATCTGGAGACATATCTGCAATGG 656 36 100.0 34 .................................... TGTTGTTGTTGTTTTACTGTGTTCTGGGTAGGCT 586 36 100.0 33 .................................... CTATTATGAATACGGTATAGGGAGTTTTTAAGA 517 36 100.0 33 .................................... GGTGAGATTTCATTCACCTCACTAATTTGCGAG 448 36 100.0 32 .................................... GCACGCTCTTGGCGAATACCTGCATCTTGTAC 380 36 100.0 34 .................................... CCCGTCTTTTTCAATCATTTCAAGCAGTGCCATG 310 36 83.3 0 ..........................AA...TCA.T | ========== ====== ====== ====== ==================================== =================================== ================== 12 36 98.6 34 GTTCAAAACCTTCCCTGTTATAAAAGGGATTAAGAC # Left flank : CTAACTTATTTGATGTTAGCATTATGACAACAAAGTCTCTTAATTTGGGGTTTGATAAGCTTACAAAAGTGAGCATACTCACTAAACTCATTTAATCACAAGACAAATCAACATCTGCCCACAAATTAAAAATCACTATCAGCAAACGACCCAACCAATCTTGATCTGTTGTATGATACATCTGAATGAATTTCTCGAGTGGTTTCGTAAGCTTATCTCGACTAGCATCAATCGGAGTCATAGCCGCAAAAAGCATTTGCAATTTGGCAAAAAATCATTAAAATAACCATATCCTCTTGGACGACAAGATGCCGCTTGATTATTTAATAGCTTGTTTTTTTGAATAATCCTAATGGGTGTCAAATTTATAAGTTATTGTTTTTTAAGGATATTTAATTATTTAGATTTCCTTAATCTACATTAACTTTTATTAAACAATTTTTGAACAAAAATTTGATCTGCAAACGTTTGATTTTACTCGTTATTTTTAAATGAGTGCA # Right flank : TTTTGAATGCTCCCATGCCATTCCGATGAAGTGTAGGACTGGCATGCGTAGGTGCGGCTGAATCTATACTCTTCACCGCACCATCATCCAATCTTGATCACCACACACCCGCCAGCATCAACTCACCTTTTCCACTACTACCAAACACAGCCCGCATTAATCACGCATCGCTTTTTGTCTTGAAATAAGGTAAAATACCTCCATTTATTTTTCGCTTATTTAATATTATAAAAAAAGGCAAAGCCATGACTGTCCAAACCTTCACCCCAGAAGCC # Questionable array : NO Score: 3.19 # Score Detail : 1:0, 2:0, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCAAAACCTTCCCTGTTATAAAAGGGATTAAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.89%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-6.00,-7.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [46.7-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.05 Confidence: HIGH] # Array family : NA // Array 2 19027-19824 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAIVK010000004.1 Moraxella bovoculi strain KZ-1 NODE_4_length_147057_cov_56.565412, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ================================== ================== 19027 36 100.0 33 .................................... GTATAGATACATTGCTAGTCCTATGTTAAGTTA 19096 36 100.0 32 .................................... AGCTGTAGCTGGTGCAATGTGGATTGCCATTG 19164 36 100.0 34 .................................... CTCCAATCATGGCATAGGTACAACCTTCAGAGAG 19234 36 100.0 33 .................................... TCTGCCGTTGTTGGCTTGTGATTGCCGTCTATT 19303 36 100.0 34 .................................... AGACGGACGTGGTATTGTGTCTATCACAGAGTAC 19373 36 100.0 33 .................................... CTAACTCAAATGTAGTAATACGTTGCCCTGTAT 19442 36 100.0 33 .................................... TTCACTCTTATTAGCAGGTTCAATTACACCTGC 19511 36 100.0 34 .................................... TCTGCGATTGTTTGCAGAATATCATTATTGCTAA 19581 36 100.0 33 .................................... AAATTCTATTTTACGTTTCTCTATTTTGGGCAT 19650 36 100.0 34 .................................... CTTCAGTGGTACTAGGGTAGCTAACATCGTTTAG 19720 36 100.0 33 .................................... TCATCGTCACTGTCTGACACGTGCTACTAAAGG 19789 36 88.9 0 ...............................TGTG. | ========== ====== ====== ====== ==================================== ================================== ================== 12 36 99.1 33 GTTCAAAACCTTCCCTGTTATAAAAGGGATTAAGAC # Left flank : CATATCTTGCAAAAGACGTCTTGCCAAAGTCTATCGGCTTATTAGCAGCCATGCAATACCCATACAGCGTTCGGTGTATTTTGCCACGCTCAGGGCTGCCGATATGGACGCCATCATCGCACGACTAAAGACAATCATCACAAAGGAGGATGACGTTAAGATATATGAAACGGAATCATTAGAAAATGCACACATTCAAGGCAACCGCTCGCCAAACATACAGCTGTTCGGCGAGAATGGGGGTCAAATCATGTGGTAAAATGCTTGTGGATTGCGATGATTCTTGTTAAAATAACCGATAATTTGACGTTGGTCGACTATTTAATAACTTGGTTTTATATAAATAATCCTAATCGGTGTCAAATTTATAAGTTATTGTTTTTTAAGGATTTTTAATTATTTAGGCTTCCTTAATCTACATTAACTTTTATTAAACAATTTTTGAACAAAAATTTGATCTGCAAACGTTTGATTTTACTTGTTATTTTTAAATGAGTGCA # Right flank : CTTGTCTGCAATTATTTATAGAACACCATTATTAACAAATCCCGCTCTAATCTTGAGATGGTTTATAAATCTCAGGGTTGGGGTGGGTATTTTGGCTGTTTAGGCTATCGGTGAACTGCATTTAGGCATGATAAACTCCCTAACCATTTTTTAAATAAATGTTGGTTATGAAAGATAATTTTTTGAATTTATGCCAAATTTCAGTTATTATAATTAAGAGTAAATTTAGGCGAAAATGCCTGTAAAATCAACGTCTAGGCACTTGATAATTGTTTGTATAATGATAACCACTATCAAGCACTTATGACCTCACATGGAGATAAAGCTATGTCGCAAATGCTAACTGAATACAGAGCTCACGTCGCTGAGCGTGAAGCGCTAGGTGTACCACCACAGCCATTGACCGACGCACAGACAGCAGGTCTGGTAGAACTACTAAAAAACCCACCAGCTGGCGAAGAAGAATATTTGGTTCATCTATTAGAGAATCGCGTACCAGC # Questionable array : NO Score: 3.21 # Score Detail : 1:0, 2:0, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCAAAACCTTCCCTGTTATAAAAGGGATTAAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.89%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.40,-6.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA // Array 1 220502-225224 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAIVK010000001.1 Moraxella bovoculi strain KZ-1 NODE_1_length_771747_cov_55.734925, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ======================================= ================== 220502 32 100.0 33 ................................ AGCCCAATGCGCCAGGGCGCGTACAATGGCTAG 220567 32 100.0 34 ................................ AACACCTAACTGCGCTCTCAATTTAGAGACTTCA 220633 32 100.0 33 ................................ GCGTCTTCAGGCGCACAGGGGTAGTATTGGTGG 220698 32 100.0 34 ................................ CCATTATTTTTGTGGTAAATTGCTATTTTTGAAT 220764 32 100.0 34 ................................ TTTGCATCTGTTATCTATATTCTTTCCTAAACTC 220830 32 100.0 34 ................................ TATCCCTGTTGGTTTTGGGGATAGCATACAAATG 220896 32 100.0 35 ................................ CCATTTATGGTGTGCCTGAGTCTCAAATTTGAGAC 220963 32 100.0 34 ................................ CAAGGCGCAACTTCAGAATTTACATAAAGACGAT 221029 32 100.0 34 ................................ TTTTTTGTGGGCGTATTTTCCTTGCGCCATGATG 221095 32 100.0 35 ................................ ACGCTTGAGTCTTTGTTTTTTTTCTAACTCTTCAA 221162 32 100.0 33 ................................ GCTTTTTTTCGGCCATCTTTTTGTCGGGAAAAT 221227 32 100.0 34 ................................ ACGACACGACCCCTATTTAATAATGGAGTTAATA 221293 32 100.0 34 ................................ ATAAGCGGGCTTTAAGTAGAGCGATTGTACACAA 221359 32 100.0 34 ................................ ATCTGCCAAGATATGCACCCATTGCCAATAAAGG 221425 32 100.0 35 ................................ ATCTGTTAGGTGGTCAAGTACAATACAAGGCACAA 221492 32 100.0 33 ................................ ACCTTCGAGAGCCTTGAAAATAGGATTAAATGC 221557 32 100.0 33 ................................ TTTTTCTTGATCGATAGACGACTGATTAAACAA 221622 32 100.0 36 ................................ AACTCGACATACGGCAAACAATTTACGCCCTTGTCA 221690 32 100.0 34 ................................ ACATCAAAAATGTAAATTTGAAACTTGGCAAGCT 221756 32 100.0 33 ................................ GTCGTCAAGATAATTGGCGTCGTAATAGGTGCA 221821 32 100.0 33 ................................ GCTTCAAACGCCACGCAAAACTTGCGTTTTCGC 221886 32 100.0 33 ................................ GCTTTGTCAAATCTGGTCGATTAAAAAGATTGC 221951 32 100.0 34 ................................ GAGCGGTCGTCGTTTGTTTTATGCTAACGTTAAG 222017 32 100.0 39 ................................ CTTTATCGGTGTGATAGATGAGCTGTGGCGGTACACCAA 222088 32 100.0 34 ................................ TGTATTATATTACGGTTTATTGTAAATAAATTAC 222154 32 100.0 34 ................................ AAAACGTTTTATGACGGGTTGAGAGAGCCTAATA 222220 32 100.0 34 ................................ AGCGGTAGGCTTGATATGGTTTGGCTTCGCAGTC 222286 32 100.0 34 ................................ ATCGCCATCTCTCAATGGTTCTGACTCAGGCTTG 222352 32 100.0 33 ................................ TTTTTGTTATAATGAAAGAAAGTTTTTTATTGG 222417 32 100.0 34 ................................ TCCTTCGGGATTTGTAAAAACTTGATAGCTATTA 222483 32 100.0 34 ................................ AGTCATAGCTTGCGTGCTTGCCTTATCCGCCACC 222549 32 100.0 34 ................................ TGTCGATACCCCTAACATGGGCTAGGGGGCTTGG 222615 32 100.0 34 ................................ TTTTTCTTGCTGTTTTTCATCATCGCCAATGTGA 222681 32 100.0 34 ................................ ACTTCGCAACATTGGCTATCCAAGTAACGCAAAC 222747 32 100.0 35 ................................ AAGGCATTATCTGCGTTGATGTGTGTATTATGCAA 222814 32 100.0 34 ................................ CACAGATATGGCTTGGACGCTGATGTCTGTTGTA 222880 32 100.0 34 ................................ TGGTGAATTTTCTTTTGAGATGCAGTCTGATGAA 222946 32 100.0 34 ................................ CCCTACAATGTTAATCAAGCAAACTTAATCAAAG 223012 32 100.0 33 ................................ TTGCTATTGCGCTGTTAAAGGCGTTTTGGTAAA 223077 32 100.0 34 ................................ AGCCAAGCTGGTTCGGTTGCCCTTGCCTTTGGAT 223143 32 100.0 35 ................................ AAAGTTATCTCTTGCCGATTGCATTAAAAATTTAT 223210 32 100.0 36 ................................ TGCCGCCTTTTTCTTAGGTTTGGCTTTCTCAGCGAT 223278 32 100.0 34 ................................ TACCGTTATTTTTTGAAATTCAGGCGGTAGGTTC 223344 32 100.0 34 ................................ CCAACACGCCTAAGACACGATGACTTGTTTTTAG 223410 32 100.0 34 ................................ CAAAGACTGCTTTTTAAGCCAATCATAGTAGCTA 223476 32 100.0 34 ................................ TGTCAATGACTGCCACGCTCTTTGCTACTGCTTG 223542 32 100.0 34 ................................ ATGCGCTGACCGCCATGGATGTCGCGGCGGTGAC 223608 32 100.0 34 ................................ ATTTTTAAGCACCACGCCATAATCGCCAAACACC 223674 32 100.0 34 ................................ AATTGTTACGCTGTTCATGCTTATCCCATTCTTG 223740 32 100.0 34 ................................ TTTTGATATTAAAGGTTTGCCGTTAGCATCATGC 223806 32 100.0 34 ................................ TAGCATCCGTTCGGCATCTCGCACCATCTGATGG 223872 32 100.0 34 ................................ ATCATACAGCTTATCCTTATCCCATTCGCCAAGC 223938 32 100.0 34 ................................ ACATCGCGGTGGCGCACAAGGTTGGCAATCGCCT 224004 32 100.0 34 ................................ ATAATCAGGGTGTTTTGAATTAACTGGCATAATG 224070 32 100.0 35 ................................ ACATCGCGGTGGCGCACAAGGTTGGCAATCGCCTT 224137 32 100.0 33 ................................ CTATTCAATGATACACCCCTTGCCACTGATTGC 224202 32 100.0 34 ................................ ATCGGTTTTGCATTCGGCTAAGGATTTGGGTGTA 224268 32 100.0 36 ................................ TTCGTCTATCTGGACAAACGAACTGGCGAGCAGGTG 224336 32 100.0 34 ................................ ATCGCCATCTCTCAATGGTTCTGACTCAGGCTTT 224402 32 100.0 34 ................................ TCGGACATGCTGACTAATTGCAGCTGACAAATCC 224468 32 100.0 35 ................................ TCCTTTGCGTAATACCACGCCTGCTGTTCGGCTGT 224535 32 100.0 33 ................................ AACTTATGGCCGGCCTCTAAAAATGCATTGTCC 224600 32 100.0 34 ................................ ATTCTGAAATTTACTAATTGTGAATATCAAAATT 224666 32 100.0 34 ................................ TATCAAAATAACAACGAAAAAATGCAGGAAATCG 224732 32 100.0 33 ................................ GACGTTGAGAATCGCGAGTACGGAAGCAGAATA 224797 32 100.0 34 ................................ CCACGCTTGTTTTTCGGTGGTTGCGCCTGAGTAC 224863 32 100.0 35 ................................ CTAAAATCTGGAGACCGCAAAAAATGAAAACCTTT 224930 32 100.0 34 ................................ GTAACCAGCCACAACCAAGTCATTGGCTTTAACA 224996 32 100.0 34 ................................ ATACCACATCCCCACGGGGTTCTTTTGCGCCCAG 225062 32 100.0 33 ................................ TTTGGTGTTAATAACAATCTTAGCGCCATTTGG 225127 32 96.9 34 ..........................C..... TGTTGCTAGCATGCAAATCAACAATGGCAAAAAG 225193 32 87.5 0 ............................TGCA | ========== ====== ====== ====== ================================ ======================================= ================== 72 32 99.8 34 ATCGCACCCCATACGGGTGCGTGTGTTGAAAC # Left flank : GATGATGAGATATGTTAATGTTAATCAGTTATGATGTGGCGATGGACGATGGCGGACAAAAACGCCTAAGGCATATCGCCAAACATTGCCAAGATTATGGCGTGCGAGTGCAGTACTCGGTGTTTGAGTGCGACATCATGCCCGACCAGTGGGTGGTATTAAAAGACAAGCTATTAAAGGCGTACGACCCTGACAAGGACAGTTTGCGGTTTTATCATTTGGGCAGTAAATGGCGTGGCAAAGTGGAACATCATGGGGCAAAAAAGAGTGTGGATTTGTTTCAAGATACGCTGATATTGTGATGAAAAAGAGGTAAATCATGGCTCGCTAACGGGCAGTTCTCATCAAAATACAGGCAGGTTAGCGATGAGCTAAGTTTTTGAATTATTTAACAATTGAAAAGAAAGATAAGTACATTTATAATAAATGGCCTTTTTAAGGCTTAGGTTAGCGATTTTACCCAGTCTAAGCCTTAAAGATATAGCCTTTAAACAAAGGCT # Right flank : AAAATCCATACCTTCTTGACCACCTATTCCAGCCCCAAATGGACAAAGATTCCAATTTAAAATGACCAGTCATTCCGATAAATGCTGGTCATTTAATTTTTTATATGATTGTTATTTGGATAAATCTAATTGATCATATAAGTCAATTTTTTCCGCATGGATTCCCCTGTTAATGTAATAGGATATGATCGGTGAATAATGCGATCTAATATAGCGTCAGCAATGGTCGCCTCAGAAAATAAATCATGCCAATTTGCAACAGGATACTGGCTAGTTATCAGCAGACCTCCAACACTAGATTGCTCGTCAATAATGTCCAGTAACACAGGGCATATCTGTGGTAGCAATTCACCTATGCCAAAGTCATCAATGATTAACAAATCCACCTTGCAATATTTTTGCTTAACCTTGGCAATACTACCATCAGCGATTGACAAAATGATATCTTCATACAAATCAGCAGCTTGAACAAACATCACTTTTCTTAAATTTCGGCAAGC # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATCGCACCCCATACGGGTGCGTGTGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [7,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-6.70,-5.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA // Array 1 83001-81061 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAIVK010000006.1 Moraxella bovoculi strain KZ-1 NODE_6_length_107775_cov_66.158814, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================= ================== 83000 36 100.0 28 .................................... AATCTCCCATGCCGACTTTAAATGGTGG 82936 36 100.0 28 .................................... GATTTTGATGCCGTCAATCAAAAATTTA 82872 36 100.0 27 .................................... GCCGTTTCTTTGTTCAATTCGATGCCA 82809 36 100.0 28 .................................... ATGAAAAGCCCCATGGTTGAGATGGGGC 82745 36 100.0 27 .................................... CTCCCTACCCAATATGTCTTATAATGC 82682 36 100.0 28 .................................... TTAACGTACCCCTACATCTGGGGGATTG 82618 36 100.0 28 .................................... AGCTTCAACCTTAACCGTGTCAGTTGTC 82554 36 100.0 27 .................................... TTTTTGTCAACTCTCAACCCTTGATTT 82491 36 100.0 26 .................................... GTAAGTATATTTGGACACGCACCAAG 82429 36 100.0 29 .................................... AGTGTTAAATACGAAACACCACCCCGCTC 82364 36 100.0 28 .................................... CCGAGCAAGAACAAGCGCAGATTGAATA 82300 36 100.0 26 .................................... AGTGGTCGGGCGATGAATTCCATAAG 82238 36 100.0 28 .................................... ACCATTAGCAGACAGTGAAAATGGGGGT 82174 36 100.0 27 .................................... AACAATCGACATAATTATCGATGCATA 82111 36 100.0 28 .................................... CGATTTTTACCGAGATTCTGCCTAGTGC 82047 36 100.0 27 .................................... ATCTAAAGACTGGCCGCAGCATTACCC 81984 36 100.0 26 .................................... GCGAGTCACACCTGGCGCAGCTGGCG 81922 36 100.0 28 .................................... AAGAAAGAACGAAAATAAAGGCTTTGAG 81858 36 100.0 27 .................................... GTGATGGCTATGAGCAATCTGCTAGCT 81795 36 100.0 29 .................................... CATATAGTTTTTTGATATCTGAGTTAAAA 81730 36 100.0 28 .................................... ATCTGTGAATTTGAGATAGATGATGTGA 81666 36 100.0 29 .................................... CACACTTTTCCATTATGGGTATATTCTAA 81601 36 100.0 27 .................................... AATAGTCGCCTTACGGCTATCGGTTAT 81538 36 100.0 26 .................................... TCTAAACTTAGTCTTAGCACCTTTGT 81476 36 100.0 27 .................................... TGTAGCGACATATATATTACTACTTAT 81413 36 100.0 26 .................................... GAGACTTCAAATATAGGCATTTTTTT 81351 36 100.0 26 .................................... TAGTAGCTGTCTAATATCTCTTGTTG 81289 36 97.2 27 .............C...................... ACACCGCCACGCCTACCCCATCCCCTG 81226 36 100.0 27 .................................... TTATGGATTAATATCATGTGATTGGAT 81163 36 97.2 28 .............C...................... GGGAAAGGCTGGGGCTATTGCCAGATGA 81099 36 91.7 0 ......T.......................C...G. | A,TC [81064,81069] ========== ====== ====== ====== ==================================== ============================= ================== 31 36 99.6 27 GTCTAACGACCTTTTAAATTTCTACTGTTTGTAGAT # Left flank : TGGTTTTGATGTTGCCAAGCTTTGACATACAAGCAAATGGAGAAGATGTATGATAATCGTCAGTTATGATATCAGTGATAATAAAGTGCGTGGACGATTTGCCAAATTTTTAATGCAATATGGCGATAGATTGCAATATTCGGTGTATGAAATCCAAAACAGCGAACGCATTTTAAATATCATCACCGAAAAAATAAAAGCAGAATTTGAGCCTTTATTTACAGGGGCGGACAGTGTCATTATCTTTCGATTTACAGAACGTGAAGTATTAAGGTTTGGCCATGCCAAACATCGCAATGAGGATTTGTTGATTTTATAAAAAGTCTTGGAAAAAATGATGAGGTTTGTTATAATAAGAGAACTAAAGCACGCTCAAATATTTACTTTGCAAACCTCAGTCTTAATGCGTGATTTATCATGTTTTGTCGGTAAAAATGATTATTTTTTGTGCAAAAAACCTGCTAATCTCTCAAAAAATCATTAAAAATACCCCAAAACGG # Right flank : ATGAGAATTTAAATGGCTGCGAAGATCAAAAGGCATTATTTCATTAAAATCCCAAAATCACAGATTTATTTTTCTAAAACACTTGTATCTTACGAATTATGATTTATAATATTAACTTATACATATATTACTAGGATTTATAATCGTGAGTACTACCCTGCGCCAGTTGCGCGCTTTTGTGTTGGTAGCTGAGCAGAACAGCTTCACCAAGGCCGCTGAGACATTATGCCTGACGCAATCGGCCTTAAGCGGTCTGATCAAGGAGCTTGAGCAGAATTTAGACGTTAAGCTGTTCGACCGCACCACACGAAAATTGCACCTATCCGATGCGGGTATGCGCTTATTGCCGCAGGCGCGCCGTGTGCTCAATGAGATGTCCGTGCTTAATGAAAAGGTCTCCAACCTAAAGTCCTTGCACCAAGGACACATTCGTCTGGCGGTCTCACAGCAGCTATCCGCATCGACGATGCCTAAGTTCATCGCTAAGTTCTGTGAGCTGC # Questionable array : NO Score: 3.16 # Score Detail : 1:0, 2:0, 3:0, 4:0.98, 5:0, 6:0.25, 7:-0.07, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTAACGACCTTTTAAATTTCTACTGTTTGTAGAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA //