Array 1 171238-173219 **** Predicted by CRISPRDetect 2.4 *** >NZ_CZMK01000002.1 Salmonella enterica subsp. enterica serovar Weltevreden strain 2511STDY5712441, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 171238 29 100.0 32 ............................. GTTCGCCCGGTATCCTCGCCAGTCCGCGACCT 171299 29 100.0 32 ............................. GGCGCCCATGAGGTATCCCGACAGGAGCACGA 171360 29 100.0 32 ............................. CCAGCGTCATGCTCTGCTCGTTGTTCCGGCGT 171421 29 100.0 32 ............................. CAGGAGACGACATAATACGTGGTGACTTTTGG 171482 29 100.0 32 ............................. GTCAGGGCGTTGATCGTCCAGTCCCGGTCCTC 171543 29 100.0 32 ............................. ATTAAATAATCATTTACCATATTGCAGGTACA 171604 29 100.0 32 ............................. ACCGGGGCCACGACTTACGTCAGCGCGCCGAT 171665 29 100.0 32 ............................. GCGGCTGCTATTCCGGGGTGGGAGGCCGGCGC 171726 29 100.0 32 ............................. GCGTTTTCCAGGCGTTGCGTTACGAGCGCGAT 171787 29 100.0 32 ............................. AAAAAATCCTTCCTTGTGGCTGTGCTGCTGGC 171848 29 100.0 32 ............................. GCAACTGGAACAACGATAGCGGGCAACTGGTT 171909 29 100.0 32 ............................. AGTTATGTTGAGTTCCGGGATTTCAATATCAG 171970 29 100.0 32 ............................. ATTATATAAAAGGCGGCGGCAATGACGGAGGT 172031 29 100.0 32 ............................. ACCACAACATCATTCAAACCGTATAACTACTG 172092 29 100.0 32 ............................. AAAAAAGGAACACACATGGCCTTAGAAGATGA 172153 29 100.0 32 ............................. ACGCGATGTCGGTACATGATATGACCACAACA 172214 29 100.0 32 ............................. CTGAGTAGCGATCGCCCCAATCCAAATTTGAT 172275 29 100.0 32 ............................. CCGGAGAAATTCAGGGTCATGGATGAAGCCGG 172336 29 100.0 32 ............................. ATCTTAACCAGCAGGCTGGGTTTGGCGGGATC 172397 29 100.0 33 ............................. GCTTTAGCCACGTTCCCACGCGCAAACACCAGC 172459 29 100.0 32 ............................. GTGATCGCGAGTGCTGAGGCTGAGGTTGAAAT 172520 29 100.0 32 ............................. GTGAGGTTTTTTTTGAGGAGTCCGCCCAATGA 172581 29 100.0 32 ............................. AGGCTCAATTGCGTGAGGCTTGGGAACGCGTC 172642 29 100.0 32 ............................. CGACGCGCTGGGGCGACTGGTTTTCACCGAGC 172703 29 96.6 33 ...........................T. GGTTAACACTGACCCGGCTGCGGTCGTCGCAGC 172765 29 100.0 32 ............................. ACCGCGTGCGCATGGACATTGCCCGCTGGGAT 172826 29 100.0 32 ............................. GTAAAAAGCCGGTTATGCGCAATAATCAATTC 172887 29 100.0 32 ............................. CTACTTGGCGTGATGCGCTGCCGAAAATTTTG 172948 29 100.0 32 ............................. CGCGTGAAAAATTGCGTTACCGCCTGGGTGAG 173009 29 100.0 32 ............................. CGCCTGGCAAATTTCACCGTTAACACGCTGAG 173070 29 100.0 32 ............................. CCGGTACGCGAGGGGATTAACCTCCGGGCCGA 173131 29 100.0 32 ............................. TCTCCAGACTCACCGATATAACCCCCTGGCAC 173192 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 33 29 99.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTACAGCCTATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACCCATCCATTACCTTGCATTGTTTATTTTCTCTATGCGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTGGTGCTGATAAAAAATAGTTTATAAACAATGATATACGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTTGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTCGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCATGGCTTCCTGACAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGGAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCTCTGCCGATTGG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 189727-192562 **** Predicted by CRISPRDetect 2.4 *** >NZ_CZMK01000002.1 Salmonella enterica subsp. enterica serovar Weltevreden strain 2511STDY5712441, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 189727 29 100.0 32 ............................. CGGTACGAAAATTTTTCATTTTTTATCCTCTG 189788 29 100.0 32 ............................. GAAGCGCCGCTGGGGCTGGTGGCGGCAGGGTT 189849 29 100.0 32 ............................. TCGTTTTTCTTATCGGTGTGGTTCGGTCGTAA 189910 29 100.0 32 ............................. CCCGCATTTCTCGGTGATCGACTTTGTAACCT 189971 29 100.0 32 ............................. GCGCAGCCCTCAAACCCACAACATACGACGAT 190032 29 100.0 32 ............................. CCAAAGAGCTGACATTGCTAGACCCTCATATT 190093 29 100.0 32 ............................. AAGGGCGGATCACTCTACGTCAGCACGTCATT 190154 29 100.0 32 ............................. GTAGGCGTGGAGCCTTGTCACTGGCCGTGAAC 190215 29 100.0 32 ............................. GTGGCAACAACGTAGCTAAAGAGATCGGAGTC 190276 29 100.0 32 ............................. GAGGGCGCGGAAATCGGCAATAAGGTCCGGGC 190337 29 100.0 32 ............................. TGGGCCATTGGCGTCTCATCAGTATCAACACG 190398 29 100.0 32 ............................. GCAACCATCGAACTACCCGCTTCAAAATCACC 190459 29 100.0 32 ............................. GGAGTTAATGACAAATTTGAGGAAAAATGTTG 190520 29 100.0 32 ............................. AATGCGACAACTCGTCTACTGGTCACAAAAGG 190581 29 100.0 32 ............................. TGTTTTCCGCCGCGTCGCAACTCATGACAGCG 190642 29 100.0 32 ............................. TGGATGATTCCGTTTATCAGGAGTTCGCTGCG 190703 29 100.0 32 ............................. TTTAAGATACTGGTCGCCGCGACCGCTCATGG 190764 29 100.0 32 ............................. CCATATAGCCCCCTCTTATATGGCGTATGAAA 190825 29 100.0 32 ............................. GCGGGTGAAGTTACCTCCGAGGGCTTTCACGA 190886 29 100.0 32 ............................. CCGTGACAGACGGCGCTTTAACGCCCGGTGGT 190947 29 100.0 32 ............................. GCCCCGGTCATGAATTGCCAGCGCCGCCACCA 191008 29 100.0 32 ............................. CATTGGTATGCCGTCGAATTCAACACGCGTAG 191069 29 100.0 32 ............................. CGTTCGCGAGGAATACTGCCAGTACCGAATTT 191130 29 100.0 32 ............................. GTGTGGTGGCCAATGGCAATTAATAACAGAAA 191191 29 100.0 32 ............................. GCAGCGAGACCACGAAAGAGGGAATACCGACA 191252 29 100.0 32 ............................. GTGTGCGTGATGAGGTTCGCGGAGCATGTTCT 191313 29 100.0 32 ............................. AGCCCCTTTCTGATTTTTTCCGTAATGTCGGT 191374 29 100.0 32 ............................. CCATGTTTGATTGTGCGGATTGACCAAAAGCC 191435 29 100.0 32 ............................. TGGATAAAACGGTGTTCATATTTATTGGTGCG 191496 29 100.0 32 ............................. CGGCCTTTGCCCCCAGGAAACGATGATGACCA 191557 29 100.0 32 ............................. GGCAGATTTACGACAACAACCCGGCAGCGGTG 191618 29 100.0 32 ............................. CGAATTACTACCGGGCTAACACAAGTGGTAAG 191679 29 100.0 32 ............................. GAATTGTTGCTACGACTAAACAGGGAGGGAGC 191740 29 100.0 32 ............................. AAATTAGATGATCTGGACAACTGCCCGCAATG 191801 29 100.0 32 ............................. GAATTGTTGCTACGACTAAACAGGGAGGGAGC 191862 29 100.0 32 ............................. AAATTAGATGATCTGGACAACTGCCCGCAATG 191923 29 100.0 32 ............................. ACTCAGGCGGAGAACTGGCCGCATTAACTGTT 191984 29 100.0 32 ............................. CTGGGTGTCCAGCGGACATCCTCAGCCGGCGG 192045 29 100.0 32 ............................. AGATAGCGTGAGGCAATTCTTAGCGTTGAACT 192106 29 100.0 32 ............................. GGAGGTTGCACCTGAGCGCCCCTTCACTGGAC 192167 29 100.0 32 ............................. CCAGCAGCTTGCGGAAAAGATCCGCACTGCCT 192228 29 100.0 32 ............................. TGGATAAAACGGTGTTCATATTTATTGGTGCG 192289 29 100.0 32 ............................. CGGCCTTTGCCCCCAGGAAACGATGATGACCA 192350 29 100.0 32 ............................. GCTAAAACGGCGCTTGAGAACAGTATCAATAT 192411 29 96.6 32 ..........T.................. GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 192472 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGGCAAGGGCTGAAAA 192533 29 93.1 0 A...........T................ | A [192559] ========== ====== ====== ====== ============================= ================================ ================== 47 29 99.8 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGTCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGGTAATAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCTTATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCGTCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //