Array 1 774621-777679 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP047424.1 Salmonella enterica subsp. enterica serovar Dessau strain KUFSE-SAL0043 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 774621 29 100.0 32 ............................. CACATTTCCTCAGTGTGCTTCAGAGGGTGGTA 774682 29 100.0 32 ............................. CCGATATCAAAAAAGCGTTTAAACGCCTTGCC 774743 29 96.6 32 ............................T TCCTGCGCTTTGGCCAGTTTGGAACCCGCCGC 774804 29 100.0 32 ............................. GCACAATTTGTGCTTTTGCAATTCACTTTGAA 774865 29 100.0 32 ............................. TGATCACAGAACTGACCGGGTACACCATACCT 774926 29 100.0 32 ............................. TGATCACAGAACTGACCGGGTACACCATACCT 774987 29 100.0 32 ............................. TAACGCCGTTCTGCATACGCTCTACCGCGCGC 775048 29 100.0 32 ............................. GGGAATGTATGGATTTAGAAGAAGAGCTGGCA 775109 29 100.0 32 ............................. GGGTATTACGGCGACACAGCGCTTGTTGTCTA 775170 29 100.0 32 ............................. TTAACAAATGTTTTTAAAACGCTTATAACAAA 775231 29 100.0 32 ............................. GGGGCGGCAATGGTGGTCAGGGTGATGGCGGC 775292 29 100.0 32 ............................. TTTAAAAATTTATCTCGATAAATCCAACGATG 775353 29 100.0 32 ............................. AATGATCGTATTTTTCGCTACGTCGCACAAAT 775414 29 100.0 32 ............................. CCCGTTATTTGTAGTTAACGGGCACGTAGTGG 775475 29 100.0 32 ............................. ATCGGGCAGCTCAACGCGGCTATGAAAATCAC 775536 29 100.0 32 ............................. TTGATCGCCGTGGCGGTGAGATTAGAAACGCG 775597 29 100.0 32 ............................. CTGCCAAACTTCTGACAATCCCGGACAGCATC 775658 29 100.0 32 ............................. CGAGTCTGGAAATTGAGGACACCGAAACCGGC 775719 29 100.0 32 ............................. TGCTGGTGGGCGGTACGCCGTGCCAGGCGTTC 775780 29 96.6 32 ............................T TATCCTTACCCTCAACGGCGCAGGCCGATCTC 775841 29 100.0 32 ............................. CGATCTGGTGAGCGCATCGGTTCGGGAGAGTG 775902 29 100.0 32 ............................. GATTGTTCAGATTGGGAATTTGACCAACGCCC 775963 29 69.0 11 ................TAAT..CGT.T.C GTGAACCAGTT TT [775983] Deletion [776003] 776005 29 100.0 32 ............................. GGGAATATCGTTAAAGTGGTTTACCACAATAT 776066 29 100.0 32 ............................. GCGCTCAGGGCCGCCTTGCTGCGGGCACTCAT 776127 29 100.0 32 ............................. GACGTGATCAAACAATTTGGCCGCCCGGAACA 776188 29 100.0 32 ............................. CGATCAAGCGAATGCGTCGGCTGGAGCATCGC 776249 29 100.0 32 ............................. GTTTTCGCGGCCGCGAGATTGTTCTTGCCGAC 776310 29 100.0 32 ............................. TACCGTTTTTACTCCCCCGCATTTGGTTACAC 776371 29 100.0 32 ............................. CAGGAGCAAGCACAAACATAGAGCAAATTAAA 776432 29 100.0 32 ............................. CCAGTGCATTCGAACTCATGGAACGGTGCTAA 776493 29 100.0 32 ............................. GCGCACCGCTTTAGAGTGCCAGGCATAGGCAA 776554 29 100.0 32 ............................. ACACAATACGTATCAGTAAAGACACAAATTGT 776615 29 100.0 32 ............................. CGCATTACCGGGAAAACCTGGGAAGAGACGAT 776676 29 100.0 32 ............................. TCTTGTTTGTTTCTGATTCTTTTTCTGAATGA 776737 29 100.0 32 ............................. AGTCAGAAGAGGACTCATTAGTATCACTCTCA 776798 29 100.0 32 ............................. AATAAACAGCGTCGTAAATGGATCGAGGAAAT 776859 29 100.0 32 ............................. CATCTCTCTATATGCAGCGCCAGCCAGCGCAA 776920 29 100.0 32 ............................. CTTTCCTTGCGTCAATTTTGAGGGAGATTGAT 776981 29 100.0 32 ............................. ATCCCGCGCTCTATTAAAATCTTTGATTGCGT 777042 29 100.0 32 ............................. GTAATGTGCGCCGCGCCGGTGATATCTACTTT 777103 29 96.6 32 .....T....................... CCATTGCTGACAGGCAGTGATTTCAATGTGTC 777164 29 100.0 32 ............................. GTCATGAATGGCCTCATAAAAACGATGTTGGT 777225 29 100.0 32 ............................. TGTTCGCGCTAAATAATGCAGTAGGCCGCGCT 777286 29 100.0 32 ............................. CCAGAAATTTAAATGGCTATTCCTGGCTGTAG 777347 29 100.0 32 ............................. GCGCAATTGCAGTTTGACGCGGTGCTGTCATT 777408 29 100.0 32 ............................. TCGTTTGTGGCGTCAGTAATACTATTATCGGT 777469 29 96.6 32 .............T............... TTTTTAAATCCGGACAGACCCTGTAACGGATC 777530 29 100.0 32 ............................. ATCCGACTGTATGCCCAGCAGAACGAGGGCGC 777591 29 96.6 32 .............T............... CACGAGTGGCAAATTGATTTCGACGAAAAACC 777652 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================ ================== 51 29 98.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGCTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATGATATACGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGGGCTGGAGCGGATAAATCGTTGAAGGCCAGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGTGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:-0.02, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 794225-796634 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP047424.1 Salmonella enterica subsp. enterica serovar Dessau strain KUFSE-SAL0043 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 794225 29 100.0 32 ............................. GCAATTTCCGATATGCGACTTGGGACACCAAT 794286 29 100.0 32 ............................. ACACCGACTCATCCGTTGTTACTCCTGGTATT 794347 29 100.0 32 ............................. CGCTACGCCCTGCCCGGTCTCGGTCTCGGTCT 794408 29 100.0 32 ............................. CACATCGGGAGCCTCAATCAACCCGGCACGGA 794469 29 100.0 32 ............................. AGTTCGATATCCCTTAACGGTACTGCCGTCCT 794530 29 100.0 32 ............................. CCTCACGCAATTGAGCCTCTTTCTCGACACGC 794591 29 100.0 32 ............................. TTCATCACCGTCAGCAAGCTGCGATCCGAAAT 794652 29 100.0 32 ............................. CCAGCTTGCCGATATCAACGACCTATACCTGT 794713 29 100.0 32 ............................. GTTAAAATTTGGGAGGATCGCCCGGGACTCCC 794774 29 100.0 32 ............................. GGACCATTGAAACGGCGCTGACATCAGATGTT 794835 29 100.0 32 ............................. TACCGAACGGCTCAAAGTATGTTCCAATTGAC 794896 29 100.0 32 ............................. GTTGAAACCAGCATTCCTTATGCTGTGCTGCC 794957 29 100.0 32 ............................. GAGATTTTTCTTGTCCCGCCACACCAGCGGCT 795018 29 100.0 32 ............................. TGCATCATCTGATTCGTACGATACGGCAGGGT 795079 29 100.0 32 ............................. GGCTGACAAACGAGCAGGTTGAATTTGTCCTG 795140 29 100.0 32 ............................. CATGGTCTGTACCGCCTGCATTTCTGCATTGT 795201 29 100.0 32 ............................. GGCCGCACCGCTGGCGATCACGATTAATCAGC 795262 29 100.0 32 ............................. CGCCTCGCAAAACTGGTCGGGGTTTTTCCCCA 795323 29 100.0 32 ............................. TTCGTGTTCTAACAGCAGATCGCTGATACGGC 795384 29 100.0 32 ............................. CCAGTAATGAAACGCTGGCAACATTGACGAGC 795445 29 100.0 32 ............................. CGCAGACGGCGCAATTGGATTCGGTGATCGGG 795506 29 100.0 32 ............................. TGCTCGAGCCGACATTGATCCCGCAAAAATAC 795567 29 100.0 32 ............................. GGATGCCGATAGCGGTCAGTAATGAAAATGGC 795628 29 100.0 32 ............................. AAGATCCTGTCTCTTTTGTGCGGAGCGCCGAC 795689 29 100.0 32 ............................. TTCGTTTGATCTCCACTCACAACGGTATTGAA 795750 29 100.0 33 ............................. GACAATTAGTTCCGACAGACGCCGGTATTAAAT 795812 29 96.6 32 ............T................ CCCACGCGCGGCCGCACTGGCCTCGCGGATAA 795873 29 100.0 32 ............................. TCCGGGCCGCCGCTACCACCACTCAGCGGCGT 795934 29 100.0 32 ............................. CCTAATGGTGATGGGGCGTTTAATCTTATCTC 795995 29 100.0 32 ............................. TGGTTTAATAGTATCGGGCAGCATTTTACCGA 796056 29 100.0 32 ............................. ATCTCAATTAGTCCGTTTCCGGTTGAATCAAT 796117 29 96.6 32 ...C......................... GGGTGTACCACGGCATGATGACGGCCAGCCAT 796178 29 100.0 32 ............................. ATTGACAACAGTCTGCTTACCCGAGCTGCTCC 796239 29 100.0 32 ............................. TCCTGTCGGCGGTACGGTGGACATCCCGCAGG 796300 29 96.6 32 .........A................... CCAGTCAGCCACTGTTCTTTGCCGTACCTTTC 796361 29 100.0 32 ............................. GGGTTATAACCGGGATACCATCCGCTCCAACC 796422 29 100.0 32 ............................. CGCCACGTTTTTTGCATTTTATTGGCATCATC 796483 29 100.0 32 ............................. GGCAACTGGGCGATCATCTGGGCGCTGTTTAT 796544 29 100.0 32 ............................. GTGCTCCAGTGGGCTGCTAAGGGGCTTGGTGG 796605 29 100.0 0 ............................. | A [796632] ========== ====== ====== ====== ============================= ================================= ================== 40 29 99.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGTACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGCCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCGCAAAGATCCGCGAGATGATATGGCAACAGGTTTCCGTTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAGGTTTTGAGTTTCAGACTTTTGGTGTAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAAGTTAGAGATCTTTAAAAATTAGGAAAAGTTGGTGGGTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGATTTAGA # Right flank : GTTTCCCCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCAGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //