Array 1 212045-210366 **** Predicted by CRISPRDetect 2.4 *** >NZ_SZVZ01000002.1 Salmonella enterica strain DR-021 NODE_2_length_715964_cov_20.206_ID_920, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 212044 29 100.0 32 ............................. CGACGCTTCCATCGTCTGGCATTCCTGTTCGT 211983 29 100.0 32 ............................. CCCGCGTATTAACAACGACGAGCAGGGCGTGC 211922 29 100.0 32 ............................. GTTGCGCAGCCATTGAGCTGCAAACGGATCAA 211861 29 100.0 32 ............................. CGCCCCCCGCATACAGCGAGAGACGGGCCATG 211800 29 100.0 32 ............................. CGCCGGGCGCGGGAGTCCCGGGCGATCCTCCC 211739 29 100.0 32 ............................. GCCCGAAATCAACTTGCAACATTTCAGTTGGC 211678 29 100.0 32 ............................. CATATGATTGACGACAATGAATTTTTTTTCAA 211617 29 100.0 32 ............................. ATAGTTCATCTCTGTTCTCCAGCGGTTTCTAT 211556 29 100.0 32 ............................. ACGGCATTATCACGGCTATTTCTCTGGAAATG 211495 29 100.0 32 ............................. GACAGGACTTACGACCGGCTGGACTACGCATC 211434 29 100.0 32 ............................. CCACAGCCGCCGCGACAATAAATTAACTCACT 211373 29 100.0 32 ............................. AATGATGAGGGGCTGGCAACGTTTAGCGCCAC 211312 29 100.0 32 ............................. CTGGCCACTCAACAGGGAAATATCGCGTGCGC 211251 29 96.6 32 A............................ CCCATCAAGATAAACATCATAGCGAGCACCTG 211190 29 100.0 32 ............................. TTTGAAATCGCTATTCTTATTGCTGTAGCAGT 211129 29 100.0 32 ............................. CGTTAACTAAAACGAACAAAACAGGGAAATCA 211068 29 100.0 33 ............................. GCCGTGCGTCAGATCACCCCAAACGCTTTCTTT 211006 29 100.0 33 ............................. GCATTAGATTGCGTTGACGGTCACGTTCTTATC 210944 29 100.0 32 ............................. CGCCTCACTGATATTCTGCGGCGAGCTGAAAA 210883 29 100.0 32 ............................. CCGGAAAACTATCTCTATCGCAGGCTGGATAT 210822 29 100.0 32 ............................. TAAGTTACGCCAGTGCGGGCGTGTTGCTCATC 210761 29 100.0 32 ............................. GAGACGCCAGATGAATTCTGCGGGACAAGAGA 210700 29 100.0 32 ............................. AACGCAGGAGAACCAGCCGCCGGTCATCCTGC 210639 29 100.0 32 ............................. GTCTGACCAGTGGCGTGGGGGGATTGCAATTT 210578 29 100.0 32 ............................. CGTGGCTGGAGCAATGAACAGATTAAAGGGGT 210517 29 100.0 32 ............................. AAGCCATTGACGCAACGGAAAACGCCAATGCT 210456 29 96.6 32 .................A........... GTATGATTTGGACATAGCTAATGATGTAAAGT 210395 29 100.0 0 ............................. | A [210368] ========== ====== ====== ====== ============================= ================================= ================== 28 29 99.8 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGTACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGCCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCACAAAGATCCGCGAGATGATATGGCAACAGGTTTCCGTTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAAGTTTTGAGTTTCAGACTTTTGGTGTAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAAGTTATAGATCTTTAAAAATTAGGAAAAGTTGGTGGGTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGATTTAGA # Right flank : TTTCAACAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCTGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 230523-228726 **** Predicted by CRISPRDetect 2.4 *** >NZ_SZVZ01000002.1 Salmonella enterica strain DR-021 NODE_2_length_715964_cov_20.206_ID_920, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 230522 29 100.0 32 ............................. AACTTAACTCCAGCATTCTGGCAATTGTTGCG 230461 29 100.0 32 ............................. GCGACATCAAAATCTATTTTTCATTCTATCTG 230400 29 100.0 32 ............................. CAATGTTTCATGCTACGCAAGAGACCAGAACG 230339 29 100.0 32 ............................. TGGTGGAGTGCCGAACCGCTACCGTTTCAAAG 230278 29 100.0 32 ............................. TCATGGCGTCATTCGGTACTGATATGCCAATG 230217 29 100.0 32 ............................. TCGTTTGTAGCCGAAAACCGGCTGGCGCTGAT 230156 29 100.0 32 ............................. TAATGAATCGCCTTTCTAAAATGAAAGACGAC 230095 29 100.0 32 ............................. GCATCGAACCGCTTATCCGTCTGTACCCACTC 230034 29 100.0 32 ............................. CTTTCATTGCGCAGGGTATGCAGTCGGTTTCC 229973 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 229912 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 229851 29 100.0 32 ............................. AATGGGATGTTCTCGATAATGGCGACGACGAA 229790 29 100.0 32 ............................. CGGTCATTTTAAAGAATCCCGTTAAACAACAC 229729 29 100.0 32 ............................. GACATTTCAGTTTTGAGCATGAACCTGATTCA 229668 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGTTGTTTAGTTCCT 229607 29 100.0 32 ............................. AAAACCGTACAACAGACAAAATATAAATATTG 229546 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 229485 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 229424 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 229363 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 229302 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 229241 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 229180 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 229119 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 229058 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 228997 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 228936 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 228875 29 100.0 32 ............................. GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 228814 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 228753 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================ ================== 30 29 98.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATTGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTCCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTGATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGTGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGGAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //