Array 1 336864-336526 **** Predicted by CRISPRDetect 2.4 *** >NZ_LT985756.1 Selenomonas massiliensis strain Marseille-P4036, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================= ======================================================================= ================== 336863 23 78.3 71 ....GA.....AA...G...... ACATCCGCGCCGCAAAGTGCCATTTTGAGGCAGGCACAGCAAGGCTTCCAGCCGCAAGGATTTTAAAACCA G,A [336843,336850] 336767 23 100.0 49 ....................... AGCCATTGGGCGTTCTGTTTGGCAAAATCCCCTTTTAATTTTAAAACCA 336695 23 100.0 52 ....................... TGGTACGTCACCGTAGGCGCACGCTGCCCCGCCTGCACGTATTTTAAAACCA 336620 23 95.7 49 ...T................... CCGCAGATTACCTCGCTGAGGATCTCCGTCTCATCCTATTTTAAAACCA 336548 23 82.6 0 .............AA.....TT. | ========== ====== ====== ====== ======================= ======================================================================= ================== 5 23 91.3 56 CATCCCCGCAAGGGGACGGAAAC # Left flank : GCGGACGAAAATGGTGAAATGCCTCGAACGCTACGGCGTGCGCGTACAGAAATCCGCATTCGAGGCATTCCTCACCGCGCGGAAATACGACGACCTCATCGCACGCACAACGCGCCTCATCGACCCACGCACCGACTCCCTGCGCATCTACCTCCTCGCCAACCACACCTCCGTCCGCTCGTGGGGTGTCGGAGATCGTCACGTCGAGGATGTTATCATTTTTTAGGAATCGCTGATAAAATGAAGTCCGTCAGATTGGCGTAGATTTTTCGTCCGAACAAGGAGGCAAACCGGACGCATAGCCAAAGCTATGTGGAGGATCGAGGGCACAGTGCGGGCAAAAAAGATGCGTCAAGATGGCGGTGCTGAATTTATCAGTGCTTCCTTTAGCGTCCAAAGGCGTGGAGGGATTGCAGAAAGAGGGACAATGTGCTATACTCAAAAATGAAATCCGCGCCGCACTTAGAGCCGCAACCTTGGCAAAGGTTTTTAGAACGCAT # Right flank : TCTCAACCTTCAACAAACTGCTGTTGAAGGTTTTTTTGTGTCTGCAAAAATCACGGTTGACAAAACATCGTTCTCATGATACCCTACGCTATTTCCGTGACAGGGAACCCCGAAATACAGGAAAGGAGTGCGGCAAGGGGCGCGGGGCAGCATCAAAAAACCTCCCTACGGAGAGGGAGGATGTTTACAAAGGAGTTGTGTGGAATGAATACGAAAAAGAAGTGTATGCTTGCCGTGGGGCTTGCATTCGGCATGTCCCTGTGTGCTGCGGTGCAGCCAGCACCATTCGTTTCCTCTGCAGCGGCGCATTTTATGACGAGCGCGGAGGAGCACGAGATCGGCAGGGCGGCGGTGGAGCGTTATGAGGAGAAGAACGATGTTGCGATGGATGATGATCTCATCACGATCCAGCAGCGTCTGATCGCGTCGAACCCCGAACACCTCAACTGGAAGGATGGCGTGCACAAACGCTGGCTCGCGCCGATGAAGATGTACCACAG # Questionable array : NO Score: 5.28 # Score Detail : 1:0, 2:3, 3:0, 4:0.73, 5:0, 6:0.25, 7:-0.30, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CATCCCCGCAAGGGGACGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.43%AT] # Reference repeat match prediction: R [matched AATCCCCGAAAGGGGACGGAAAC with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.60,-9.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [61.7-38.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,4.91 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 208403-210005 **** Predicted by CRISPRDetect 2.4 *** >NZ_LT985754.1 Selenomonas massiliensis strain Marseille-P4036, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================= ==================================================== ================== 208403 23 100.0 47 ....................... TCGCATAAATCTCCTCCTTTGAAAACCAACTAATCATTTCAAAACCA 208473 23 100.0 47 ....................... TATGTTGAGGCGTGTGGTATGGCGGATGTCCTAGAATTTCAAAACCA 208543 23 100.0 51 ....................... TGTTCCCTCGGCGGACGATGCGCAAAGTAGCAAGGTGCAATTTCAAAACCA 208617 23 100.0 47 ....................... CGATAGATTCAAGATCTTGCTTAACAATCCCAGATATTTCAAAACCA 208687 23 95.7 52 ........T.............. TTTTTCCCATCTAGACGAAACGCGATCCGAGAGAGGTATCATTTCAAAACCA 208762 23 95.7 49 ........T.............. CTAAAGACTGGGTTGTTCTTCCGCGCGGATCGGAATGATTTCAAAACCA 208834 23 100.0 49 ....................... GAGCCTAAGCCCCCTGAAAAAAATCAATTCAGTCTATATTTCAAAACCA 208906 23 95.7 49 ........T.............. GCATTGAGGACATGCAAATGAGCGCAGCATGTCAAGAATTTCAAAACCA 208978 23 100.0 51 ....................... TCAACGTACACATTGATTTTGTGTGGCGTCGCATTGATAATTTCAAAACCA 209052 23 100.0 48 ....................... CGATCTACTTCATATTTACGCTTTATAGCATCGTTTATTTCAAAACCA 209123 23 95.7 50 ........T.............. TTTTCGGAAAAATTCGACACGGAAATACATCTCACATTATTTCAAAACCA 209196 23 95.7 48 ........T.............. GAACATAGAGATCATCCTTTCTTTAAAACGACAAAAATTTCAAAACCA 209267 23 100.0 46 ....................... AATGAGAAAATGCGAATGATGTTAGCGTTCATGAATTTCAAAACCA 209336 23 95.7 49 T...................... AGGTCTTTTCTAAGCCATTGCGCGTTCTGTGGGGCGAATTTCAAAAATA 209408 23 95.7 50 ........T.............. CGCTCGATCAACTCTGGGAGTGGCGCACACCAACAATAATTTCAAAACCA 209481 23 100.0 50 ....................... TTCTTCCACTGCTCGACGGTATAGTGCTTGTCCTCCGTATTTCAAAACCA 209554 23 95.7 50 ........T.............. TCATGGTAAAAACCTCCTATACTACTAACTGCCAGCCGATTCCAAAACCA 209627 23 95.7 48 ........T.............. GAAAACTTCAAAACATCAAGCCCAGAGATGTTACAAATTTCAAAACCA 209698 23 91.3 46 T.......A.............. CGAAGTCATTGACCTGAGGTTCAAACTGATAATAATTTCAAAACCA 209767 23 95.7 47 ........T.............. CAATCCATAGCCATGTTCCACATACTTCAAGGTTTATTTCAAAACCA 209837 23 100.0 50 ....................... AGCGGAAAGCTTCTGCGATTGACGTGTTCATAAATAAAATTTCAAAAATA 209910 23 95.7 50 ........T.............. TCGGAAATAAATTCTTCAAGATTAGCCCAGTATGACAAATTTCAAAACCA 209983 23 73.9 0 T.......T......G...C.CG | ========== ====== ====== ====== ======================= ==================================================== ================== 23 23 96.4 49 CATCCCCGCAAGGGGACGGAAAC # Left flank : TGCTATCCTGTGATAGGGTAATGGATTCGTAAAGGAGATGTCCTACATGGCACAGACCAGCATCAGTATTCGCATGGACGCTGAACTGAAGAAGAACTTCGAGAACTTCTGCGGGGCAGTCGGCATGAACATGTCCACGGCGATCAACATGTTCGCCATCGCGTGCGTACGCGAGCAGCGCGTCCCGTTTGAGATCTCCGCGCAGCGCGCACTGCCGGGCGAGGCTCTCGATCTCTTTACGGATACGACGTGGAGCGACGGGGAAAACTGAACACACGCGCATATCCGACCGCATCCCGCGCGTCGGATATTTTCTTGTGTAAATCGGGAGACTGTGCTATACTATAGGAGGAATCCGCGCCGCACTTAGAGCCATGCTCGATGCCGTCGCTTTTAGAACAGATTGCCGCAGCAAAGCGGAGGGGAATCCGATCCGCGCCGCAAAATGCTGTTTTGAGCCACGCGGCACAAGGCTTCCAGACGCAAGGATTTCAAAACCA # Right flank : GCAAGGGGCAGTTGCCCCTTATTTTTTTATGCTTTTTTAGTGGAAATGTGACTTTTGCAACGGAATCGCGAAACGTTCTCATCTATACTAATCTCATTGATGATAGATGTTTTCAATTATATAGATGGGAGCGATGACAATGACAGATGAGATGAAGCACGAACCGGGACACGAATTCCTTGCGCGTCTGGGCAAGACGCGGCTGCGTCCGGGCGGGCGCGAGGCGACGGAGTGGCTGCTCGGGCACGTCGACTTTACGGCGGATACGCGCGTCCTTGAGGTCGCGTGCAACATGGGCACGACGATGGTTGCGCTCGCCGAGGCGCATGGCTGCCGCGTCACGGGGCTGGACATGAATCCGAAGGCGCTCGAAAAGGCACGCGCGAACATCGAAAAGCACGGACTCAATGACGTGATTGATGTGGTGGAGGGGAATGCCCTCGCGCTGCCATTCCCCGACGAGACTTTCGATGTCGTTATCAATGAGGCAATGCTTACAA # Questionable array : NO Score: 5.60 # Score Detail : 1:0, 2:3, 3:0, 4:0.82, 5:0, 6:0.25, 7:-0.12, 8:1, 9:0.65, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CATCCCCGCAAGGGGACGGAAAC # Alternate repeat : ATTTCAAAACCACATCCCCGTAAGGGGACGGAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [13,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched AATCCCCGAAAGGGGACGGAAAC with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-9.10,-11.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-18] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [38.3-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.64 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 1146673-1149821 **** Predicted by CRISPRDetect 2.4 *** >NZ_LT985754.1 Selenomonas massiliensis strain Marseille-P4036, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ====================================== ================== 1146673 31 100.0 36 ............................... TGCACAGTCGCTCCACCTCCTGCATCGCGCAGTAGT 1146740 31 100.0 37 ............................... GCACCGCTCACCAGTGCCGCCTTAATATCTGCTACGT 1146808 31 100.0 36 ............................... GCCAGATCAATCAACAAAAGCAAGCGTAGCAAGCGT 1146875 31 100.0 36 ............................... CAGCCATACACGCCCGCGCTATAGGCGTATGGCTGT 1146942 31 100.0 37 ............................... CGGAAAGCGTGAATTTGAGAATCATTTCACGCACAGT 1147010 31 100.0 35 ............................... TCCGCTCCTCCGCAGATCCCCTCTGTAGGTTAGGT 1147076 31 100.0 36 ............................... GTTACATAATCCCTTGTAAAATATGATGGCTTGAGT 1147143 31 100.0 36 ............................... CGCTTGTGCTGCAAATTGATACCCAACAGCCTACGT 1147210 31 100.0 36 ............................... CGCTTGTGCTGCAAATTGATACCCAACAGCCTACGT 1147277 31 100.0 36 ............................... CCGCTTGTGCTGCAAATTGATACCCAACAGCCTAGT 1147344 31 100.0 36 ............................... TTTGCCGCTATCGCTACAGCCCGCAGCCCTACAGGT 1147411 31 100.0 35 ............................... CTGTTGATTTTGCGCCGGATGAGATCAACGACAGT 1147477 31 100.0 36 ............................... GCTCATGAATACCCTCCTGTGTGTCCAAGACGACGT 1147544 31 100.0 36 ............................... CTATCACGCCGGAAAACCGTGCGGAGCTGGTACGGT 1147611 31 100.0 36 ............................... GGTTTGAGTGCAGCGAATGCCTCATCCTTGACAGGT 1147678 31 100.0 36 ............................... ATCGATCTGCGGCTGTGCTGTGATCCCGCCGTTGGT 1147745 31 100.0 36 ............................... ATCGATCTGCGGCTGTGCTGTGATCCCGCCGTTGGT 1147812 31 100.0 35 ............................... TTGTCCACATAGACGGCTCGCCAGTCGTCATATGT 1147878 31 100.0 36 ............................... TCCTCTGTATGCTCGGGCGGCAGATAGGTCGCAAGT 1147945 31 100.0 11 ............................... AGGACAATTCA Deletion [1147987] 1147988 30 80.6 35 A...T.T..C-..A................. ATCGAGACTGCAACGTGGGGGCTGCCCTCATGGGT 1148053 31 100.0 35 ............................... TCGAGATCCCGTGCGATCTGGCGCTCATCCTTGGT 1148119 31 100.0 36 ............................... CCCCAAGAAGCTCCATATCCGTCGTAGAATGGACGT 1148186 31 100.0 37 ............................... ACGTGAAACAATTACGCTATCAGATTCCGCATAACGT 1148254 31 100.0 37 ............................... TCTATATAATGTAGCTTTCTGTTTAGTTTTTGTGTGT 1148322 31 100.0 37 ............................... TTGATCGAGTGTCATTGTCTATTACCTCCACGCCTGT 1148390 31 100.0 38 ............................... GTACGTTTGCGACGCAGCAGGTAACTGCTACGGAAAGT 1148459 31 100.0 36 ............................... TCAAGATTTCCGAGGAGCGGTGCGATTGCTCCGAGT 1148526 31 100.0 35 ............................... TTCCCCCCGTAAACACCACGGCGGGACTGCCCGGT 1148592 31 100.0 35 ............................... GTATCACTGGTTGACATAAAACTTGACGATAAAGT 1148658 31 100.0 37 ............................... ACAGAAAAAGGCGGATTGGCGATAATCGCACGGAAGT 1148726 31 100.0 35 ............................... ATTAAGAACGCAAAGGCAGAATCTGCACGGCTGGT 1148792 31 100.0 35 ............................... CGGCATCTAGCTTGGTAGCGTCTGCGATCCGCAGT 1148858 31 100.0 36 ............................... ATCTAAAATCTCCTGTAATGCGGCCAGAAGCGGGGT 1148925 31 100.0 35 ............................... ATGATGGCGGAGATACGAGCAAATGGCGACTGAGT 1148991 31 100.0 36 ............................... GTGCTACCTGCCACGCGCCGCAGCACCGAGAGGAGT 1149058 31 96.8 35 .........C..................... CATCACAACGCCCGTATCCTGAAACCCCTTGTCGT 1149124 31 90.3 36 ..TA.....C..................... AAGTCGTGGTCAACGACTTGCAGAACCGCAGATGGT 1149191 31 96.8 35 .........C..................... TGTTAAGGATAAGAAGAAGGAGGCGGCTGCATGGT 1149257 31 96.8 36 .........C..................... CAGCCGAACACGCCCGCCGCATAGGCGAACGGTTGT 1149324 31 96.8 36 .........C..................... GCAGATGTGGCACGACGTATTCCGCCTGTGCACGGT 1149391 31 96.8 35 .........C..................... AAAAAGTAACGGATGATCTCGCGCTCCTCCGCAGT 1149457 31 96.8 36 .........C..................... CCCGGCGGCAGACTTATCATGTGCGGCTCGAACTGT 1149524 31 96.8 36 .........C..................... TGCTATAAAAAAGTAACCCGATAAGGGATATAGGGT 1149591 31 96.8 35 .........C..................... TTTTCTTGACTAGAGGATAACATAAAATAAATGGT 1149657 31 96.8 36 .........C..................... AAGGAACGGCTGCGGCGATTTAAGGAACACGTTCGT 1149724 31 93.5 36 .........C......T.............. ATACGTTGAAAGATCACTGCTCCGAATGCTCGGGGT 1149791 31 83.9 0 T........C.T..A....C........... | ========== ====== ====== ====== =============================== ====================================== ================== 48 31 98.3 35 CGCGCCCCGTACGGGGCGCGTGGATTGAAAC # Left flank : GCTTACCCGCCATTTTTGTGGAAGTAGGTACTTGCCATGTACGTTTTAATCACCTATGATATTAGTACCGTTGATGCTGACGGGAGAAGGCGTTTGCGGCAGGTCGCGCGAAAATGTAGAGCCTACGGACAGCGTGTGCAGAACTCTGTCTTTGAGTGTAAGGTTGATCCGACGCAGTGTAAGCAGTTGGAGCTTGCGCTGCTGGATATCATCGACCTGCAGGAAGACAGTCTTCGATTCTACTATCTTGGCAAAGACAAAGGACCGAAAGTAACGCACTATGGTGTTAAGGAATCCTATGACCTGGAGGCCGCTATTATCATCTGAGCCTGTTGTATGAGTGCGAAGGTGAAGTGAACAGAAAATGACAAAAAAATCTAGGTGCGAGAATCACGTTATAGGAGGGGCGTGAGACTTAGGCACTGAGAAAATCATAATTTGTGGAGGAGAATACCCATAAATATGTGGCAAAAGGGGGAAGTCGTGCCTCCAGTTGCTGT # Right flank : CAGGACGCCTAAAGAATCGCTGATAAATTCTTTTGTATGCCTCTTCCTTGCAAATTACAATAAAGGAAACTGCCACACGACGAGGGAGAGAGGCAACATCATGGTACAGTAGATCTTTACGGAGATGGAATACGAAAACCAAAAGGGGATAACACGGCGTGAAGCCTTTTTGGAAGCCATGGAATCCATCATTCCTTGGAACGAATGGATGGCACTCATCCACCCGATGCCACAACATTCCTGCACTTTCGTCACCTGCTCGAAAAATCCGACATCGCCCACAAGATATTCGATAATGTGAAACAGCGGCTGGACGCTTCAGGACTCATCATGTACGGCAGTACGATTGTGGACATAACGATCATTCATACACCGAGTTCGACCAAGAATGCAACGAGGTCGCGTGCCCTTGAGATGCACTTTACGAAGCAGGGGAAACAGCGGTACTTCGGCATGAAGGTCCATTTTGGTGCGATGACGGAACAGGCTATGTTCATACG # Questionable array : NO Score: 9.13 # Score Detail : 1:0, 2:3, 3:3, 4:0.91, 5:0, 6:0.25, 7:-0.03, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CGCGCCCCGTACGGGGCGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CGCGCCCCGCACGGGGCGCGTGGATTGAAAC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-10.60,-10.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-11] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.78,0.27 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //