Array 1 2772-3332 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACFOX010000007.1 Bartonella sp. B10834G6 NODE_9_length_3418_cov_279.803480, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 2772 35 72.2 28 .CC..-..........T.G...C......A..G.CT ATTAGCTGTTAGTTTATTGACACTTTTA 2835 36 83.3 30 .....................T.........GTGTT CAGGCTGCAATATTGGCTTTCTCGACCATG 2901 36 75.0 30 C....A..C...T........A..GG...A..T... TTTCATTAGCATGTGTTAGAAAGGTGTTGA 2967 36 100.0 30 .................................... TTAACACAGAAACAGACAATCGGAAAAGTG 3033 36 100.0 30 .................................... GAACCTGATCGACAGTATTGATCGCGATTG 3099 36 100.0 30 .................................... AAAATCTATTTACAGCATCTTCACCTTTTG 3165 36 100.0 30 .................................... CTTAAAAGATATAACAAACGCGACTCCGAG 3231 36 100.0 30 .................................... TTAACAAAGAAGCAGACACTAGGAAAAGTG 3297 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 9 36 92.3 30 GTTGCGGCTTGACCGCATTTTCTAATCTGTTACAAC # Left flank : AAATGTAGACACACTGCGCCTTTGGCCGATTTATGCAGAAGTTTTCTTCACTTGTCAATCGACCAGCTTTAAAAAACCGAAAAGCTTTTGGTGAATTAACCGGCAATCATGGCAAAAAACCGGATGCATTTGACAAACAACCATTTTTGTCGGGCAAACAGCAATAGGCCGAAAAAACTCTGATGCGTTTTAAAAAACGCGGCCCGAGCCCCGCGCAAAAATGAACAAAACAAAGTTGAAAGGGTGAACGGAATTTTCCAAAAAAACAAAAAAGGGGCTTGTGTCAAAGCCAATTGCCAGCTATTTAGCCGCTAACGCGCTCGGATATTTGTTTAACAAATAAAGTTCGCCTTTTATGGAGAGGTGGCTGAGTGGTTGAAAGCACCGCACTCGAAATGCGGCATAGGGGCAACTCTATCGGGGGTTCAAATCCCTCCCTCTCCGCCATGATTTTCCTTTTCTTTGAAACGACTTCTTTAGTTATGCGCCCGTTCGGAATG # Right flank : CGATGTCCACTTAACCCTTTGTTTTATAAGGTTTAAGTGGATATTTTTTTTAAAAAAAATGCTGTTTTTCATTAAAATAACACCGG # Questionable array : NO Score: 5.87 # Score Detail : 1:0, 2:3, 3:0, 4:0.61, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCGGCTTGACCGCATTTTCTAATCTGTTACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:54.05%AT] # Reference repeat match prediction: F [matched GTTGCGGCTTGACCGCATTTTCTAATCTGTTACAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-1.60,-3.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [26-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [56.7-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,1.05 Confidence: MEDIUM] # Array family : II-C [Matched known repeat from this family], // Array 1 133682-132719 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACFOX010000003.1 Bartonella sp. B10834G6 NODE_3_length_490426_cov_274.993229, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ================================ ================== 133681 36 100.0 30 .................................... CGTTGTCCGAACCAAAAGAGGTTAAAAATG 133615 36 100.0 30 .................................... ACCCAACGCGTCTGCAACATTTTTCTGCGT 133549 36 100.0 29 .................................... TCTTTTGAGATCGTCCCCTGACACTGGCG 133484 36 100.0 30 .................................... AAATTTACACATGATGAGATTGTCGATAGG 133418 36 100.0 30 .................................... GGACGAGTCCTTCAGGATTTCCTGTCTTAC 133352 36 100.0 30 .................................... AACGAGTACCGAACCTTCAATCATGCTGTT 133286 36 97.2 30 ..............A..................... AACGAGTACCGAACCTTCAATCATGCTGTT 133220 36 97.2 31 ..............A..................... ATACGCCATGTCTTTAGTGATCGTCTGTTCA 133153 36 100.0 30 .................................... CCAAAAGCGGCGCATTCTCACGGATTGACC 133087 36 100.0 31 .................................... TTCAAGCGCGTGCCTTACCCATCCGCTATTT 133020 36 100.0 30 .................................... TGAACAATAGATCGGGAATGGTACTTTCGA 132954 36 100.0 31 .................................... CGCGATTAAGATTTGTTCAGGTTATTTGCCT 132887 36 100.0 32 .................................... TTCCGGTTATGGCAACAGCGGCGGGTTCCAGA 132819 36 100.0 29 .................................... TCACACAAGCCAAAGCGGGCGAATTGATT 132754 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ================================ ================== 15 36 99.6 30 GTTGCGGCTTGACCGCATTTTCTAATCTGTTACAAC # Left flank : CCCCTGAAAATCTAACAATATTTTTACATCAGCGCACGATCAATTTGCTTGTCCCTTAAGGCAAAAAAAATATCGAACTTTCATCGTTCAGGCAAAGGTGTTTTAATCCGCAAACGTGAGCATCCTATCAAAGCGACATCGGAAATTTATTCGTCAATCACTGAACACGAAATTTTCGAAAACGAATTTTAAAAAGTCAAAATAGCTATGTTTCCGCATTCAATTATTATGGCAGTAAACATTGGCTAAGCGATCTGCAAAAGACACGCTCGGAAGAAATATTTATAACGACTTTACTTCAAACGATGCCGGAAATTTTGAGAAAGCGGAAAAAGAAAAATTTGACGACACCGTTGGGTCGGAAACCCCCAACACCAAAAAGGTGGCGCTCCGGATGGCTCTGCGTCCTAGGAAAATATACTGGAATTGAAATGTAAAATCAACGAACAACCTAATTAAGGAAGTAACGATTGAATATAATGACGTTTTGCCAACGTTCT # Right flank : CGATGTCCACTTAACCCTTTGTTTTATAAGGTTTAAGTGGACATTTTTTTTAAAAAAAATGCTGTTTTTCATTAAAATAACACCAGTTGGGCGGGATTTTTTTGACGTTTCCTACGTGCCTGATCGGAAAATCTTACGATATTTTCATATTGCTTGTCGGTAAATTGGAAAATATAGATGTTCCCTCGTTCAGGCAAGGAGGATTCGATCTTCCTGACATAAGATTCGAATTGTTCTTTGCCGTTACAGAAACGCAGATAATTCGAGAACAGGCCCATCTCGAAGCCAATATCCAACAAAAATTGTCTGAATTTCGTTGCGTCGTGGCGCTGTTTTCTTGTCTCTACCGGTAAGTCGAAAGTAACTCATATCCACATTAATCGATACCCGCTTAAATGATTAGGACCCGATGTTGCACGCTCAAGATAGGCTGTCATAATTGTCATTTTCTCCCCATGCGTCATCAATTTGGACCGGATCGTTTTGCAAAGAAAAAATTG # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCGGCTTGACCGCATTTTCTAATCTGTTACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: R [matched GTTGCGGCTTGACCGCATTTTCTAATCTGTTACAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.10,-0.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [73.3-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.5 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], // Array 2 134538-134304 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACFOX010000003.1 Bartonella sp. B10834G6 NODE_3_length_490426_cov_274.993229, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 134537 36 100.0 30 .................................... GAATGAGCGGCTTCCCACCATTGCCAACGC 134471 36 100.0 30 .................................... GACGAGTCATATCGACACCGTCGACGGCAT 134405 36 100.0 30 .................................... AAAGTTAGTTTTGTCTACGAATATAAAGAT 134339 36 97.2 0 .......................T............ | ========== ====== ====== ====== ==================================== ============================== ================== 4 36 99.3 30 GTTGCGGCTTGACCGCATTTTCTAATCTGTTACAAC # Left flank : CTGAAAATCTAACCATATTTTTACATAAGCGCATGATCAATTTGCTCGTCCCTTAAGGCAAAAAAATATCGTAATTTCATCGTTCAGGCAAAGGTGTTTTAATCCGTAAACGTAAGCATCATATCAAAGCGACATCGGAAATTTATTCCTCAATCACCGAACACGAAATTTTGGAAAACGAATTTTAAAAAGTCAAAATGCTATGTTTCCGCATTCAATTATTATGGCAGTAAACATTGGCTTGGCTAAGCGATCTGCAAAAGATACGCTTGCAAGAGCTACTTATAACGACTTTACTTCAAACGATGCCAGAAATTTTGAGAAAGCGGAAAAAGCAAAATTTGACGACACCGTTGGGTCGGAAACCCCCAACACCAAAAAGGTGGCGCTCCGGATGGCTCGGTGTCCTAGGAAAATATACTGGAATTGGCAAATAAAATCAACAAACAGCATCATGAAGGAAGTAAAGATTAAGTATAACAAGATTTTGCTACCGTTCT # Right flank : TGATGTCCACTTAACCCTTTGTTTTATAAGGTTTAAGTGGATATTTTTTTTAAAAAAAATGCTGTTTTTCATTAAAATAACACCGGTAATTTTCGATTTTTTTTGACGTGTCTTCCACGTTTCCCCTGAAAATCTAACAATATTTTTACATCAGCGCACGATCAATTTGCTTGTCCCTTAAGGCAAAAAAAATATCGAACTTTCATCGTTCAGGCAAAGGTGTTTTAATCCGCAAACGTGAGCATCCTATCAAAGCGACATCGGAAATTTATTCGTCAATCACTGAACACGAAATTTTCGAAAACGAATTTTAAAAAGTCAAAATAGCTATGTTTCCGCATTCAATTATTATGGCAGTAAACATTGGCTAAGCGATCTGCAAAAGACACGCTCGGAAGAAATATTTATAACGACTTTACTTCAAACGATGCCGGAAATTTTGAGAAAGCGGAAAAAGAAAAATTTGACGACACCGTTGGGTCGGAAACCCCCAACACCAA # Questionable array : NO Score: 5.82 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCGGCTTGACCGCATTTTCTAATCTGTTACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: R [matched GTTGCGGCTTGACCGCATTTTCTAATCTGTTACAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.10,-0.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [76.7-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,4.91 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], // Array 3 136256-135160 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACFOX010000003.1 Bartonella sp. B10834G6 NODE_3_length_490426_cov_274.993229, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 136255 36 83.3 31 ACA..C........A....................A CAACCCCGCGTCGGTCCAGTTTACGCGGCCC 136188 36 100.0 30 .................................... GAACATAATCAATGACCGCGGCCTCCATTT 136122 36 100.0 31 .................................... ACTTGGTACTATTGTCGGAGCAGCAAAACCA 136055 36 100.0 30 .................................... TTTGCCAATATTCAATCTCGATGCCGGTGA 135989 36 100.0 30 .................................... TGTGCCTTCAAAGGCACGTCCATAGATTTC 135923 36 100.0 30 .................................... ATGCGACGAACGCTTGCAATGATTGAGCAA 135857 36 100.0 30 .................................... TGAAACCAAGAGCGTCGAGGTACTCGCGCA 135791 36 100.0 30 .................................... ACAGGCGCAAGTCGCCAATGTATCGCGGCA 135725 36 97.2 30 .........................C.......... TCAGAACCTGCTTGCGTTACTGTTGTGTAA 135659 36 100.0 30 .................................... GTTCGACGAACTCTTCTTCGGCCGTGTCTG 135593 36 100.0 31 .................................... CGAACGCGCAATCAAACGGCGCTGTAGTGAC 135526 36 100.0 30 .................................... CTGTTTCATGTCGAAACAGTGAAAGGAGTT 135460 36 97.2 30 ..............A..................... TTAATTGATGAGTATCAGATGTTTGTGAGT 135394 36 100.0 31 .................................... AAACAGAAATGCTGGGGGAAATGATAACACC 135327 36 97.2 30 .......................T............ CGATAAATAACGGAAATATCGTTCATAATC 135261 36 100.0 30 .................................... CGTTTCCGCGCTCATGGTGTCACCTCATGC 135195 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =============================== ================== 17 36 98.5 30 GTTGCGGCTTGACCGCATTTTCTAATCTGTTACAAC # Left flank : GCTCGGCATGAAGTTCGGGGCAAAAGAAGTTTATGCCCGTTTCGGCTTTCGCAAAGTGTTGATGGCGGGTTCTCTCGTCTCAGCAATGTTTACCGCTTCCAATGGCTTGTTTTACCCCACCACGCCCTATTTGCTGATGATTATCGTGCTTTTGTTCGGCGGCTTTTTGCGCTCGCTTTTCTTCTCCGGTGTCAATGCGCTTGCCTTTTCCGATATTGCCAAAGAAGACATCAGTCAGGCAACGCCGATTGCCGCTGTTGCCCAACAGGCTTCAATGGCGCTCGGCATTGCAATTGCTGGCGCGGTTCTGGAAATTGCGAGCTCCTTTCACGACAATATATTGAAACTTGGCGATTTTCATACGGGCTTTTTCGTCGTCGGCTTTATCTCGGCACTTGCTTTCTTCATCTTCCGCACATTGCCACGTGATGCAGGCCATGCTTTGAACGAAAAAAGCAAACAATCCACCGCACAAAATTGATGAAACCGAAACATATTCT # Right flank : CGATAGCCACTTAACCCTTTGGTTTATAAGGGTTAAGTGGACATTTTTTTAAAAAAATGCCGTTTTTCATTAAAATAACACCGGTAATTTTCGATTTTTTTGACGTGTCTTTCACGTTTTCCCTGAAAATCTAACCATATTTTTACATAAGCGCATGATCAATTTGCTCGTCCCTTAAGGCAAAAAAATATCGTAATTTCATCGTTCAGGCAAAGGTGTTTTAATCCGTAAACGTAAGCATCATATCAAAGCGACATCGGAAATTTATTCCTCAATCACCGAACACGAAATTTTGGAAAACGAATTTTAAAAAGTCAAAATGCTATGTTTCCGCATTCAATTATTATGGCAGTAAACATTGGCTTGGCTAAGCGATCTGCAAAAGATACGCTTGCAAGAGCTACTTATAACGACTTTACTTCAAACGATGCCAGAAATTTTGAGAAAGCGGAAAAAGCAAAATTTGACGACACCGTTGGGTCGGAAACCCCCAACACCAA # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCGGCTTGACCGCATTTTCTAATCTGTTACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: R [matched GTTGCGGCTTGACCGCATTTTCTAATCTGTTACAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.10,-0.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.78,4.5 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //