Array 1 7874-8127 **** Predicted by CRISPRDetect 2.4 *** >NZ_JQRB01000001.1 Leptospira noguchii strain 56183 Contig001, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ===================================== ================== 7874 37 100.0 35 ..................................... TGTGATTTGTCTGGTCAAAAATAATCCGCCTAGAT 7946 37 100.0 37 ..................................... ATATCCAGCTGTCCTTACTGAGGACGAACAAGAGGGC 8020 37 100.0 34 ..................................... TTTGTATAAATACATTGGAGGATTTGCATGATAC 8091 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ===================================== ================== 4 37 100.0 36 GTTTCTTCTTCTTACTTTAGAGGAAGTGGATTGAAAC # Left flank : CAAAGAAAAAATATAATTTTTCGCCTAACATCAGTTAATTATAAGTAGTAGCTTCTCTATTACTTATAATAACGTGTTAAAAACTATATTTCGAAGTTTTGTGTGTTGTTTCTCAGTATTGATTTGTTAAATCGTAATTTGTGGTAGTTTCTACATTTTTTATATAAAATTTAGTTTTCTATTAAACGTCTAGTTCGGTTATAAGATCATTCAAAATCTCTAAATTCATACAATTTTAAAAAAATTTTATATACTCTTTAAATCCTGCTATAAGTTTTCCTTTGAGTAGCCGATCCTTTACATTGAAATGCTTTTTTGCGAACCTGTTTCTCCCGATTCTTTGCAGACCTTTCGCGCTCTTGTATTGATTCGTTGTTTGGCGATTTGACAGTTTCGCTTAGCATTTGTTCAGCATGGTAAAAATAGGTTCGCAATTATTATGTCTAGAAAGCCTAATAAAGCTTTTTATAATACATAATTTTCATCCCTATTAAGCCGCT # Right flank : ATGCAATAGTTTATTCTGAAAATGCGCCTGAACTGTTTCTTCTTCTTACTTTAGAGGAAGTGGAT # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCTTCTTCTTACTTTAGAGGAAGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-6.30,-1.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [70.0-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0 Confidence: HIGH] # Array family : NA // Array 1 13778-15512 **** Predicted by CRISPRDetect 2.4 *** >NZ_JQRB01000228.1 Leptospira noguchii strain 56183 Contig228, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 13778 29 100.0 32 ............................. GTGGTATATAAAATGTCAGAAGTCAATATGCA 13839 29 100.0 32 ............................. GATTTTGTGGAAAAAGTATCAGCCAATCCACC 13900 29 100.0 32 ............................. CTGACATTTACCCAAGTCCCACTCTGCAACTA 13961 29 100.0 32 ............................. GTGCCAGATATATTCCAAAAATCATTGGCAAC 14022 29 100.0 32 ............................. TTTCTCCACCGTCACTACTTTGGGTAATGATG 14083 29 100.0 31 ............................. GTTAAAAAACCATGAGCACAACTAGACTGAC 14143 29 100.0 32 ............................. TTAAGGAACTAATCAAACTTTTGAGTGGAATG 14204 29 100.0 32 ............................. CGGTCCCAGAATCTACAATCCAACCCCATTTG 14265 29 100.0 32 ............................. TTTGCACGATCTACAGGGTGACTGTGATTCCC 14326 29 100.0 32 ............................. TAAAACCAGAACTTGCAAGTTGTTCTGCAATC 14387 29 100.0 33 ............................. AAATCTAATATAATAGGCCAGGCGATTGCATTA 14449 29 100.0 32 ............................. TTTAGAGCAATTCGAGGCCATCCTCATGCTCC 14510 29 100.0 32 ............................. TCATATTTTTTCGCCAAACATTTTAAATAAAA 14571 29 100.0 32 ............................. CGATCAAAGAAATTTTGGATCCAAAAACTAAA 14632 29 100.0 32 ............................. GATTGAGGGATTCGATGTGCGACCGGATAGCG 14693 29 100.0 32 ............................. GCGGCAAAAAATAAACGCTATCAAAAAATTGA 14754 29 100.0 32 ............................. CAATAAAGGATATATTTTCCCGCAAAACCCTA 14815 29 100.0 32 ............................. AATAATGTGAATATAGATGGCTCATCTAATAT 14876 29 100.0 31 ............................. GACAGCACAAAGGCGGCTCGATGATCTCTGA 14936 29 100.0 32 ............................. CGCTAAACCGGCGGACAATAGTGATAAACCCA 14997 29 100.0 32 ............................. GACGATTTACTCGAATCGATTTGGCGCAGGAT 15058 29 100.0 32 ............................. TGTGTGGATTCGGAGCAAGAACACCGCGAAGC 15119 29 100.0 32 ............................. TCATCTCTGCGAATCTCCTTTATCCTCTTAGC 15180 29 100.0 31 ............................. ATGACATACTCAGGAGGCTTTTCGCTGTTTG 15240 29 100.0 32 ............................. CATTGATCTAAATTACAGATTCCCAGGCACAC 15301 29 100.0 32 ............................. TAACAGCTTGAGAGATTTACGGGATATGACGA 15362 29 100.0 32 ............................. ACGGCGCAAATCAAAATTTCTCAGAACGGGGA 15423 29 100.0 32 ............................. GCGACCAATCGCGTTTTAGACTGGGCTGTAAA 15484 29 93.1 0 .........................TT.. | ========== ====== ====== ====== ============================= ================================= ================== 29 29 99.8 32 CTATTCCCCACAGGCGTGGGGTTGAACCG # Left flank : CAAAGTAAATTGTTAAAACGCATTATTCCCGATATGAAGGAGTTAATCTATGGTGGTACTGATCCTGGAGAGGGTGAAGACTTCACAGAGGGGCGAGATGTCGCGGTTAGCCATTGAGTTAAAACCGGGCGTTTTTGTTGCAACCGTTGGCGCAAGAGTTCGTGATCAAATCTGGAAAAAGATTTGTGAAGAATGGAAATCGGACGCTCTCATGCTATATTCGAGCAACACCGAACAAGGTTATATCATTCGTTCGAATGGAGATCCATCCAGAGAGATTGTCGAGTTTGACGGTATTCAATTGATTGCCAAGCCCGATCCGAAAAGTGACCATATACAAATTACCGATGAGATTGACGAATCAAATACCGAAATCAATTCTCCATTTCCAAATATAGAAGAATTTTTTGTAGAGAAGGCAGACTCTCTTCGCGCAGAACTGGATCAAAATCTAAATAATCCGTAGACATAATATCAGATCTACTATACAAATTCTTAGA # Right flank : GAGGATTTCGTATCTCACTGACCTCTGACATTCCTCAAAAAGCTTGGCCTTTACTTTGCTGATCCGGCAAACCACTGATTGCTTGTCTTTCCTTTACAACATATATACTACGATAGAGAGTTTGTCCTATTTGAAATCTTCATTTAGATTTCTTCCTGGCGTTGTTGAATATTAGCAAGGCCCCCAACTGTCCTCAAGGCTTTCGTAATAGGGCAACCTCACGACCAACCGCAGCACCGAGAAGCGACAGTGTCGCTTCGGATGCGAGGTTACGACTCGTGTGAAGCGAAGGCGAAACACGAAGTCGTGGGCGTGAAAAAATAAAAAAGCCAGAACTGTCCTCAAGGCTTTCGTAACTAGGGCAACCTCACGACCAACCGCAGCACCGAGAAGCGACAGTGTCGCTTCGAATGCGAGGTTACGACTCGTGTGAAGCGAAGGCGAAACACGAAGTCGTGGGCGTGAAAAAACAAAAAAGCCAGAACTGTCCTCAAGACTTT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTATTCCCCACAGGCGTGGGGTTGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCACGGGCGTGGGGATGAACCG with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.80,-11.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0.74 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 6982-6375 **** Predicted by CRISPRDetect 2.4 *** >NZ_JQRB01000199.1 Leptospira noguchii strain 56183 Contig199, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ==================================== ================== 6981 37 100.0 33 ..................................... TTCTTTGAAGGGAATGTTAAATTCGAAATTTGA 6911 37 100.0 36 ..................................... CGGTATCCGATTTCGCGAATTCCGCGATTGAATCCC 6838 37 100.0 35 ..................................... TGAGACGTATAAACTTTGTTTCGAAAAATATCTTC 6766 35 86.5 36 .......A...A....A....--.............. ATCACAAATGTAAACTCAGATTTACATTTGACTAAA 6695 37 100.0 33 ..................................... AAAGTTATTGGACGGCGCGGCTCACGTTAAACA 6625 37 100.0 35 ..................................... GATTATTGCAAGGCTGCTATTCCGGATCTGGAAAA 6553 37 100.0 34 ..................................... AAATTAGTCACACGTGACTATTTTGGTTTATTCT 6482 37 100.0 34 ..................................... TATTATTGAATCTGAAAAAGATTTTATAGAATTA 6411 37 94.6 0 ...........G....A.................... | ========== ====== ====== ====== ===================================== ==================================== ================== 9 37 97.9 35 GTTTCTTCCTTTGTTTGAAAAGGAAGTGGATTGAAAC # Left flank : GAAGCGAGATGCTGAGTTCAGGAGAGGTTTGCTTTAGTTTCATAAAATGTGGGGACTAACTACAAAAATTGAACTAGATTAGTACTGCTTGAAAGTTCCCAAAGTATCAAATGAGACAAAATATGTGGGAACTACTATAGTTTATTAATATTTTCTAAAGAATGACCGCGTAAAATTCTTTGGGTTTTGGGACAGGCTCTAAACTTTTAAATCAATCCTCTGAAAATTCATCTATAGACATCCAGTTACTTAGTAGTAGTTTATAGTTTTATATTCTTGACTTTAAAAAGCGGACCATTTTATGATAAAGCGCTTTTTGCGAACCTGTTTCTCCCGATTCATTGTGGCCCATTCGCGCTCAAGCGAATAACCCCCGTTTGTCGATTGAACAGTTTTGCTTAACGTTTATACAGTATGTCGTCAATAGGTTCGCGATAATTATGTCTAGAAAAGCTAATAAAGCTTTCCCTAATACATCAATTAGGGCCTGTGCCGCCGCT # Right flank : TTTGAGATGAGTTTCATTTAAAATTTCCAGAATTTATCTGTAAAAATCATGGCTTACTTTAAACCTCTGTATTCAAAATCCTGAAATTATATTTTAGAAAATCAATATATAATTGATTACAAACTATTTTTAAAAATACTAATATAATCTACATTTTAAGTAAAGATAGATTATTTTCGAGATAACTTTTACCGATCCCTACAAAATCAAGTACCTAAAGTTATGATAAAGTGTCGGTTAACGTGTTTTCGGGATAATCCAATGCGAAAGCGATTGAGGCGGGATCAACAAATTGAATTCAGGATTAAATTTTGTTTTCGAGCGAACCCTCAATTTGTTGATCGGAGCTGAAAGCGCGGTCCGGCAGCGCCGGATTCGCCCCGGTTTTCTTTCTCTGAATTTCACACTATTGAAGTGTAAAAGATTGAGTATTTTATTATATAGTTATAGAGTAGTATTTCTATAAATCCTGTAGACTACAGAATTGATTTTGATTTTGA # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:0, 3:3, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCTTCCTTTGTTTGAAAAGGAAGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-5.40,-6.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [75.0-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.68,4.87 Confidence: HIGH] # Array family : NA // Array 1 186-441 **** Predicted by CRISPRDetect 2.4 *** >NZ_JQRB01000272.1 Leptospira noguchii strain 56183 Contig272, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ===================================== ================== 186 37 100.0 37 ..................................... CAGGAGGAAATCGATCTACTTAAATAATCAAGAAACG 260 37 100.0 36 ..................................... TCTTCATCCAAGAGCTTGATGATTCCGAAAAGGAGC 333 37 100.0 35 ..................................... TTGGAAAGAATTAAAATCATAAAAACTTATGATAA 405 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ===================================== ================== 4 37 100.0 36 ATTTCTTTCTCTTATTAAAGAGGAAGTGGATTGAAAC # Left flank : TTTGCGAACCTGTTTCTCCCGATTGATTGCGGTCGGTTCGCGTTCAAAGGATTTATCTCTGTTTGTCAATTTGGAGGTTTTGCTTAGCATTTATATAGTATGTCACGTTTAGGTTCGCAATTATTATGTCTATAAAAGCTAATAAAGCTTTTTCTAATGTATAAATTAGTATCTTTGTGGCCGCTA # Right flank : CAAGAACTCTACAGGAAATATTAAGATGAGCAAAGAATTTCTTTCTCTTATTAAAGAAACGGGTTGAAACCTCAAAAAGACGATTATTATAAAAATAAAATTATATAACGTAAGTTAGGTGCCGATTATTTTTTTATAAAAAAGTGTGCAAATTGTTATAAACGATTTGAGTTCAAGTTAAAAAATGTAGAAATTAATACATTCTATAAATTAAATATACAAAATCTATCGTTCAACTTTATAGTAAAAATACAATTATGAGGCGCAGCTCGTGGGAACCTCATACAAATTAAGAATATTCTACCTCGATTTTCCATAGAAGATTTTGTCAAATTGCCGGTTGAATTTATGGAAGGATTTGAAAAAATAGAGTTTCGGAGAATGTTTTAAAATAATAAGTCTGTAATCAGGTTGTAGTAAGTAAGCATAATTTGAAGTTCTAAATCGAGTAAGTTGTGTTTTATCATATTTCCTAAATTAGAGTTGTTGAAAAATTTGGA # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTCTTTCTCTTATTAAAGAGGAAGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.27%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-6.40,-4.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [71.7-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0 Confidence: HIGH] # Array family : NA // Array 1 1915-582 **** Predicted by CRISPRDetect 2.4 *** >NZ_JQRB01000379.1 Leptospira noguchii strain 56183 Contig379, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 1914 37 100.0 37 ..................................... GCGAATGGGTGCTCAAGAGACCAGATATTCATGTGGG 1840 37 100.0 34 ..................................... CACAATTTGCAATGCTGGAACTGGTTTAATAATT 1769 37 100.0 34 ..................................... ATTGTCTCTGATCTGTTTTGCAAATTTAATTAAT 1698 37 100.0 35 ..................................... GCAAATGACAGGACCTCGTTGTCTTTCAAAGGCTC 1626 37 100.0 34 ..................................... TCTTCTGATCATTTCTCTAACCCTTGTCGCATCC 1555 37 100.0 33 ..................................... ACTTACTCGATGCGGGTGAAGATCGTAAAATCA 1485 37 100.0 33 ..................................... TCCTAAAAACTTACCTCTTCGGACCCTGCTGTT 1415 37 100.0 36 ..................................... ACCTCCTTTGTTTATTGCAAGTGGTCGTAACATTTC 1342 37 100.0 36 ..................................... CCAAGGACACATCAAACACCCTACCAGACTCCGACC 1269 37 97.3 34 .......T............................. TGTCCGAAAATATTCATCCCGCCATTACCGGGAA 1198 37 94.6 33 .......T...............G............. AAGGAAACGAACGGCCAAGCAATTTCTCGTTCT 1128 37 97.3 36 .......................G............. GCTCCCGGCTCGTCGTTTTTAAGAGCGTTCTCGGTG 1055 37 94.6 34 .......T...............G............. TTTCAGATACTTCGTTAGTTTGTACAATTTCTCC 984 37 97.3 38 .......T............................. TTTAAGTTTTCCTGGGGTATCAGAGTCCTTATTTGTGT 909 37 94.6 37 ..........T............G............. AAAATTTAAAAGAGGTGGAAATGGCGGCGATGAACGG 835 37 97.3 36 .......................G............. CCATAACAGTTGTATTTTTTCCTGTTCCGTTGTAAA 762 37 100.0 36 ..................................... GATACTAACCTAAACCCGATTAGGCCGGACATTAAG 689 37 91.9 34 .......T...............G..C.......... TTTGTAGATGTCAGTTCCTGCGTATTGAACTACT 618 37 97.3 0 ..........T.......................... | ========== ====== ====== ====== ===================================== ====================================== ================== 19 37 98.0 35 GTTTCTTCCTCTTGTTTGAGAGGAAGTGGATTGAAAC # Left flank : GTTATAGAGAATTTTACTAGGTTGTTTCAAAACTAAAAACTTTGCGAATGTTTACCGACGAGTCACTGTTTTATTGAGTCTAAATTCAATTGTTTTTGAATTGATCCTTTCAAAATCTCTAAAATTCGTAAGACCTAAAAAACATTTTTTTTAAATTTTAATTTGAGACTGCTTCTAAAAAATCCTTTTGCTTCTTTTCAAAAAATTTCAGTTAGGTGAGAACTTTAACTTCATTTATAGCTTAAATCTATCTTTCCTGGACTTCCTTGTTATAGGTTCGCCTTTGGGTAACCGATCTTTTAAAATGAATTGTTCTTTGCGAACCTGTTTTTCCCGATTTATTACGGACCTTTCGCGCTCTTGTATAGATTCGTTGTTTGGCGATTGAACAGATTTGCTTAACAATTGTGCAGTATGCTGAAATAGGTTCGCGATTATTATGTCTAGAAAGTTTAATAAAGCATTTTATAATACATTATTTTCAACCCTATTAAGCCGCT # Right flank : CATTCTGCTTTTCTAATGCGGCGGCCGCTTCGATGTTTCTTTCTCTTGTTTGAAGGACTACATAATAGAAGTGTCTAAAATTCCATTCCTGAAACTGGATTCCTTTCAAAATTTATAATACTCTAATATATAGGATAAATAGTATTCTAGTGAATTGATAGGCAAGAATGATAATTTCTAAGTTTTGTGGTAGTTCCCGCAAATTTAGGGAAATTGAATATCAAACTGCTACAGGCTAAATGTATAAACTACGACTGATTTCCATTGAACAAAAGTTAGTAGGAAAAAATTTTTCTAAAAATAGGAGTTCCTACATTCATTTGTATTTTTACAGACTGAAGCCTCTCTTTCGGAGAATGACTTAGAACTTGTCTCAAAACCGTCCAATATGGGAACTATTACGAAAATGGAACGACATTAGAATTGTTTGAAAGTTCGCAAATTGCTAAATGCGATTTAATTTATAGGAATTACTATACTTTAACGTGAGTTCGGCCTAA # Questionable array : NO Score: 6.02 # Score Detail : 1:0, 2:0, 3:3, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.86, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCTTCCTCTTGTTTGAGAGGAAGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:59.46%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-8.20,-9.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [55.0-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : NA // Array 1 948-353 **** Predicted by CRISPRDetect 2.4 *** >NZ_JQRB01000504.1 Leptospira noguchii strain 56183 Contig504, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ========================================== ================== 947 30 93.3 41 ..............G.A............. ATGCAATAGTTTATTCTGAAAATGCGCCTGAACTGTTTCTT 876 30 93.3 41 ..............G.A............. CGTGAAAAAGGATTTGTGTCCATGAACGATATTCGTTTCTT 805 30 100.0 41 .............................. CGTATCTATCAGTTTATAATACGTCTCTTTTTTGGTTTCTT 734 30 100.0 42 .............................. TATAACTGCTATTTTTGATCCAAAGGCACCAAAAGGTTTCTT 662 30 100.0 40 .............................. ATGACTCTTCTTGATATATCTCCATAAAGTGCGTGTTTAA 592 30 86.7 41 ......CT.......A.....A........ TTCTTGTTGGTCGACTCCATAGCCAATTGGAGCGGGTTTAA G [578] 520 29 90.0 41 ..............GA.-............ TCCTCTTGTTTATAACAACCTCGAGACCATGGTCGTTTCTT 450 30 90.0 37 .......A......G.A............. CAGTATTTTAAGTCTTCTTCTACTTCGAAATATGTTC 383 30 73.3 0 ......CT......G.A..CA..C.A.... | G [374] ========== ====== ====== ====== ============================== ========================================== ================== 9 30 91.8 41 CTTCTTACTTTAGAAGGAGTGGATTGAAAC # Left flank : | # Right flank : CTGAACGCGGATTTATATAACGTGAGTTCAGTGTAAAGAATTCATTTTTTTGAAAAAAGCTGTTGGTTTTAAACTTTCTGAATCAATTCCTAAAATGTAGGAACTCATACTTTTAGAAATTTGTAATGTGACTTAATCTGTGGGAACTACTGCAAACCACGATTTTAAGAAAAAATTCTAAAATGTGGGAACTCATACTGTTTAAAAATTTGTAATGTGACTTAATCTGTGGGAACTACTGCAAACCACGGTTTTAAGAAAAAATTCTAAAATGTGGGAACTCATACTTTTAGAAATTTGTAATGTGACTTAATCTGTGGGAACTACTGCAAACCACGGTTTTAAGAAAAAAT # Questionable array : NO Score: 5.44 # Score Detail : 1:0, 2:0, 3:3, 4:0.59, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.59, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCTTACTTTAGAAGGAGTGGATTGAAAC # Alternate repeat : CTTCTTACTTTAGAGGAAGTGGATTGAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [0.00,-2.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [15-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-1.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.28 Confidence: HIGH] # Array family : NA // Array 1 26167-26561 **** Predicted by CRISPRDetect 2.4 *** >NZ_JQRB01000051.1 Leptospira noguchii strain 56183 Contig051, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ==================================== ================== 26167 37 100.0 33 ..................................... TATGATTTGTGCGGCCTGTTTTGATGACGATAA 26237 37 100.0 36 ..................................... TATTACAGGTTTTGAATCTAGTTCGGACCTCATCGA 26310 37 100.0 36 ..................................... GAAATCGGGCGTATGTAACTCTTTTCGGAAGACAAC 26383 37 100.0 34 ..................................... ACAATTAATCTGACTCAAAATTAACTGGGATCGG 26454 37 100.0 34 ..................................... CCGATACAGACGATAAATAGAGAGAGTCCCGTCT 26525 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ==================================== ================== 6 37 100.0 35 GTTTAATCTCTTCTTTTAGAGAAGAGTGGATTGAAAC # Left flank : TCAGCGTCTCGCTTCTATTGGCGCTCGACAGGCTGTACAAGTTCTTAAAGAATAATAGAGTTGTCGAAAATTTCATAATTCAGATCAAAAAACTTTTTCAATCAACCATTTCCATAGAGCAGAAACTGGGAAAAGTAATTTTCAATAAATCTAATGTTTTTAAAATATTAGATTTTACAACAAACCTAATTTCAAAATTAGCAAGCAAACGTTCCCTTAATTACGTCTCTTTAGATAGTTATAAATTTATAATGTTCTACTTTTTTAATCTATATTATTGACCCCGGAAAGACGATTATTTACAATAAAACGTTTTCCGCGAACCTGTTTCTCCCGACAAATCACGAACCTTTCGCACTCTTGTATTGTTTCTCTGTTTGGCGATTGAACGGTTTCGCTTAACGTTTGTTCAGCATAGCAGAAATAGGTTCGCAATTATTATGTCTATAAAGTCTTATAAAGCTTTTGTAATTCATTATTTTGGATCCTATCAAGCCGCT # Right flank : CGATTACTTATATAGTTTTCTTGGATTCAGTCGCATTGTGAAGTTTATAGATTTTTAAATCGCATTCTTACTGTTCAATTCAGCGGTAGTTCCCACAGATTTTGTCGCATTACGAGTTTTTAAACATTCATTTTTCGTAATTAGAATTTGTAATAGTTCCCACATTTTATTTTTACGGAAAAATCAGTTTTTATAAAGTAAATCTATTGTTTTGAGTTTTTTCTGGTTTCATTTTCACCGGTTTTTGGATGTTTTTCGGTGATTTTGCTTTTTACATTTCAATTCTGGATAACATTTCATTTGCGTTGACCCTTTTTCAGAGACGACTATAAACTACCTACATAACGTGAGTTCGACGTAAGAAAATTGGGGCGAATCGCTCGCAAATTTCATAGTTAAAATTGCTCACGACCGCGCTTTTCGCTCCAATTCCTTCGGAATTTCCGCTACAATCGCTTTCGCATTTGTTATGCCGAACTCACGTTACATAAGTAAAATTG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTAATCTCTTCTTTTAGAGAAGAGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-8.10,-7.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [70.0-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0 Confidence: HIGH] # Array family : NA // Array 1 67-596 **** Predicted by CRISPRDetect 2.4 *** >NZ_JQRB01000572.1 Leptospira noguchii strain 56183 Contig572, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ===================================== ================== 67 35 100.0 34 ................................... CTGCTACTTTTGTGATTCCTTTTCCTTGGTAACG 136 35 100.0 37 ................................... ACTCATCTTCGGTAACAAGAGCGTCTTGAATATTTTG 208 35 94.3 36 .................CA................ ACACGTTAGTTATCTCTCAGCCTTACCGGTTGAGAA 279 35 100.0 35 ................................... ACACCGTCAGGAGAAAAACGAGCGATCCGCTTTCT 349 35 97.1 36 .................C................. ACTTATATTTGGATTTTTTTTCGTCCTCATCATCAG 420 35 100.0 37 ................................... ACTAGTGTTACAAATGCACTTAACGCGCTTGAGAGCT 492 35 94.3 35 .................CA................ ACCGGGGTAAACACTTAAGGGATTTCGAAACCGAT 562 35 100.0 0 ................................... | ========== ====== ====== ====== =================================== ===================================== ================== 8 35 98.2 36 ATTTCTTCCTTTGTTTGTGAAGGAAGTGGATTGAA # Left flank : CTTCCTTTGTTTGTGAAGGAAGTGGATTGAACATCATCACCGAAGATACGGACCTTAACGATATTGA # Right flank : ATCATTTAAAACATCTTCGAAAAACGTTAAACACGACTTAGTCGCCCCTGAAAAAGTGTTCAAATGACGAATAACGCAAATAAAACGTTATCCAGATGGATCGAATCAAAAACAAAACCACCGTAAAGCATCCAGAAGCCACGTAAAAGGCGGTGAAAATGAAACCAGAAGAAAGCTCAAAACAAAAAAATCAAGGTGAACTATTTCGCAACAGATTAGACCAAGATCATAGACACCCGTTGTATCAAATAGCGAACAAGATAGACTGGGAAAAGTTTGAGAAAGAATTCGGAAAGTATTACACAGAGAAGATGGAAGACCGGGCTTACAAATACAATTGTTAGTTATACTTCACTACTTAGAAAACGCGTATAACGTGTCTGATGAGAAGGTTATTTAGAAAATCAGTATTGGCAACATTTCAAGTGACTAGGTTTTAGTCTTAGATGTTAGTTATATTTTCGTAATAGAGCGATTTCGGTTTAAACAAAGTAAAATCT # Questionable array : NO Score: 3.17 # Score Detail : 1:0, 2:0, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTCTTCCTTTGTTTGTGAAGGAAGTGGATTGAA # Alternate repeat : ATTTCTTCCTTTGTTTGCAAAGGAAGTGGATTGAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:65.71%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-6.10,-4.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA //