Array 1 53-1329 **** Predicted by CRISPRDetect 2.4 *** >NZ_LXZJ01000126.1 Ligilactobacillus salivarius strain KLF005 NODE_9_length_50105_cov_5.34755_ID_7001, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 53 36 100.0 30 .................................... TGTTGAAGATATATATGGAAACAGACATAG 119 36 100.0 30 .................................... TTCACGTTGGAGATAATTCTTGGTTGGCCA 185 36 100.0 30 .................................... GCCAGTGCATGACAGTGATATGGATATTTA 251 36 100.0 30 .................................... TACAAGTCTAATAGTATATGAGTTTAACGT 317 36 100.0 30 .................................... AGGCAAGGTTATCGGCAGTGTTACAGTTGA 383 36 100.0 30 .................................... TGAAGAACTTATCAAGCAAGGATATGTAAC 449 36 100.0 30 .................................... AAGCAAAGTTCTATAAGTGTTGATTACTGC 515 36 100.0 30 .................................... CATGGAATATACGCGAAAGAAGATTGCTGA 581 36 100.0 30 .................................... TGTTTTACTTTTCTAGATAAGCTATCGCCA 647 36 100.0 30 .................................... GTAGAGATTGGATATGTTAGATTTGTTTCT 713 36 100.0 30 .................................... TATACCTAGCGAATTATCATATATACCTTT 779 36 100.0 30 .................................... ACAAAAGAAAAAAGAAGAAAGTTCCGCTAA 845 36 100.0 30 .................................... CAAAGTTCAGACATCGCCAAGTAATTCAAT 911 36 100.0 30 .................................... GGACTTTGGCTCAGTAAACTGGCCAGGATC 977 36 100.0 30 .................................... TAGACAAATTCCTAATGCACTAAGACTTCA 1043 36 94.4 30 .............A....................T. TTACAAGCCTAATACTGACAAGCACTGGGT 1109 36 97.2 30 ..........A......................... TATCAACGAAGATAGGGTACATGGTCAAGG 1175 36 75.0 15 ..........T..A......TCT.......TG..AA AACACAGGAGGATTA A,A [1195,1203] Deletion [1228] 1228 36 86.1 30 ....T.....A.............A.A........T GATCTACGTTACATTTTCTTAATGTTCACA 1294 36 75.0 0 ......T...A.........T...AG...CG..G.T | ========== ====== ====== ====== ==================================== ============================== ================== 20 36 96.4 29 GTTTCAGAAGGATGTTAAATCAATTAGGTTAAGACC # Left flank : TTAAATCAATTAGGTTAAGACCCCGTGATTTCACCGTCACAATCGGAATGCAG # Right flank : TTAAAATACAAAAAATATTTCATAATATTTATAAATCTATCAGAAATTTTCTGGTAGATTTTTTTAGTGTAAAAATTTTTGGGTTTAAGATATATTATGGTTGATAATGTAATATTATATGATATATAATATAGTTGAAGATAAGATATAAAAGAAAGTGAGGGATGATGATGAAAATTCAAGTTAGTTCTGATTTACTAGATGGTTTAGTATTAGCACTATTAGATAAGCAAGATTATTATGGATACTCATTGACACAGGATATGCAAAGAGCAATTTCAATTTCAGAATCAACACTCTACCCAGTATTACGCAGGTTAAAGAATAATGGTTTATTAGAAACATATGATCAATCATATCAAGGGAGAAATCGTAGATATTATCGCATAACAAATAGTGGGGAAGAACATTTAGGAAGAGTTAAAAAAATGTGGAGCGACTACAAAGTTAGTTTGGATTCAATTTTCGAAAAAAATAGAGAGGGGGAATAATAATGAACT # Questionable array : NO Score: 6.01 # Score Detail : 1:0, 2:3, 3:0, 4:0.82, 5:0, 6:0.25, 7:-0.06, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAGAAGGATGTTAAATCAATTAGGTTAAGACC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.70,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-28] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-85.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.27 Confidence: LOW] # Array family : NA // Array 1 21355-22481 **** Predicted by CRISPRDetect 2.4 *** >NZ_LXZJ01000051.1 Ligilactobacillus salivarius strain KLF005 NODE_31_length_22895_cov_3.03803_ID_7057, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 21355 29 100.0 32 ............................. AGCTCTATCTTTCTTTTGCGTTATCCCTTTAA 21416 29 100.0 32 ............................. ATTGTTCACTAACATTATCTTGTTTAAACTTC 21477 29 100.0 33 ............................. ATAACTGGGATGGAACTAAAATAAAAAAAGATG 21539 29 100.0 32 ............................. AAATAGCCCTGTAACCATTAAAGGCTGCAAAG 21600 29 100.0 32 ............................. TAAATATCCTGACGAAAATCACTACTTAAATG 21661 29 100.0 32 ............................. CATCTGGCCTACTTTGAGCCTTAATTGATAAA 21722 29 100.0 32 ............................. TTCACTGCAATTTCTGCCAAAATCACAATAAA 21783 29 100.0 32 ............................. GAATATAAATGATGAAAGTGAGGTTGATTTTA 21844 29 100.0 32 ............................. GATTGGAAAGTATGCCAGATCTATTACTTAGA 21905 29 100.0 32 ............................. GAATTTGTCATCATTCCTAATTTTTCATTATC 21966 29 100.0 32 ............................. AAGGGAGGAAATTAAGATGATTGAAGCAATGT 22027 29 100.0 32 ............................. AACTTCTACCATGCCCAACGCCTAACGAATAT 22088 29 100.0 32 ............................. GTGCAACAACAAAAGGTTAATGCAAGTTTAAC 22149 29 100.0 32 ............................. GAATGTGTACCATACCGAATTTTACCTACACC 22210 29 100.0 32 ............................. GCTAAAGGGTTTTATTATAAGGGTAAGGCTTT 22271 29 100.0 32 ............................. AAATGGTGAGGGTTATCAACAAGGTGATTTAT 22332 29 100.0 32 ............................. ACGTATTTGACTACGTATTGACTAAAAATCAA 22393 29 100.0 32 ............................. TTTGAAGATGGCACAGCTTATTTAGCAGTTGC 22454 28 86.2 0 ........T.......-C.........A. | ========== ====== ====== ====== ============================= ================================= ================== 19 29 99.3 32 GTGTTCCCCATGTATGTGGGGGTGATCCT # Left flank : TTAGAGAAAGATAGTATTATATCAATAGGTGCCGTTAAAGTAGAAAATAATAGCAAGCATGACTATTATTCTCTTATTAAAGGTATAGAAGAAATTCCAGATGAAATCAGTGAGTTAACTGGTATAGGAATTGATGAATTGAATAAAGATGGTGAAGATATATATAAAGTTTTAAAAGTATTGTATGGGGTTTTAGATGATGCTATTATTATTGGGTATAATCTTAATTTTGATCTTAATTTTCTTAATAGAGAATATGAGCAATATACTGAACTTAAGTTAGTAAATAAGGTGATTGATTTACTCCCAATAGTAAAAAAACAGTGTCGTTTTTTAGATAATTATCGCTTAGAAACGGTATTGCAATATTTTGGTATAGAAAATTCTCATCCACATAATGCATTGGAAGATGCTAAGGCTTGTATTGAATTGTATGAGAAACTAATAAAAAACAAATAGTAGTAACTTCAAAAAGATCGATTTAATAGGGATATTTTACT # Right flank : TTAGAAAAATTAAAGAAGTAAGGTCTTAAGTTATATTTCTAAAGTACTTTATAATATAGATTATAATATCCTCTGAGTATACAGATGAAATAGAAAATGACTCTGATGCTCAGGGGGTATTTCTATGGAAAAAAATCTAAATATTCAGTTGAAGGAAAACTATCAATACTTAATGAAACTTCACATATCGGAATTTTTGAAGTAACAATTAAGTATGGAATCGATTATAAAACTATTGGACGATGGAGACTGCTTTATCAGTATCAAGATCTTTAACCAAGTAATAGAAATCAGAATTATTCTAAGGAATTCAAGTATTTATTAGTGGTTCTTTGTCAAAAAGGACTGATGCCAAAATTTTAATTATTATTTTCAAACTATTAGATGAAAGTCTAATAGTTTTTTGTTTTAAGT # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCATGTATGTGGGGGTGATCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,10] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTATTCCCCATGTATGTGGGGGTGATCCT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-9.50,-7.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [78.3-81.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 59-425 **** Predicted by CRISPRDetect 2.4 *** >NZ_LXZJ01000084.1 Ligilactobacillus salivarius strain KLF005 NODE_61_length_12041_cov_4.5252_ID_7117, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================= ================== 59 37 100.0 29 ..................................... AAGTGGAGGCTTGTTATTTACTTACTTTT 125 37 100.0 29 ..................................... GAGCCTTGACATGGTTTGTTCATTGTATT 191 37 97.3 29 ....................................A TATTTTCTCCGAATTTGTCCTTAAATTCT 257 37 100.0 29 ..................................... CGTTTTGTTGATGAAGTCCACCGTTTAAC 323 37 100.0 29 ..................................... TGTGTTTTAAGAGCATGATAAGGGCTAGG 389 37 97.3 0 ....................................C | ========== ====== ====== ====== ===================================== ============================= ================== 6 37 99.1 29 GGTCTTAACCTAATTGATTTAACATCCTTCTGAAACT # Left flank : CCTAATTGATTTAACATCCTTCTGAAACTGCATTCCGATTGTGACGGTGAAATCACGGG # Right flank : CGTTATTTTATAATCAAAATTTAACGATTAGTTAGTACCAATCAATATAATCCTCATCAATATAGTAATTATCACAGTTTTCAAAGAATCTCTGATCATTCTTTTCTGTGAATTCAATTATAAACATTGATGCGTTAGTCGCCTTAACAAGATTTACAAGTTCCTGAAACTCTTCTTTAGTGAGATAATGCGCGACGTTGGTTAGACCTATAATTCTTTTTCTATTTAATTCCACATGTAATTTAACATCTGAAGATATTCTATCATATGCATTTTTCCATAGCAATGCCTCCGTATGTACCTGACAATACTTAAATAGTCTTGTTAAATCATTATCATAATTTACTTGTAATGGTATATCAATTTTATACAAAACCTCTCGAATACGATCATACAAACCATTTACTGATTTTAGTATTGCTTGTCTTTCGTCGTCTGTAATGTCTTCAATAATCTTCTTGATTAATACATTCATATACTTTTTACTAATTCGGTCTGTT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGTCTTAACCTAATTGATTTAACATCCTTCTGAAACT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,-0.70] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [56.7-78.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.27 Confidence: LOW] # Array family : NA //